RchiOBHm_Chr2g0100981

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
12752289 .. 12756419
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47560

Sequence Viewer

Length: 1413 bp
ATGCCGACTTTCTCTGTCATAGCTTTAGATAGGTTATTAGAACCTGGAGCTTCTTCCAAATCTGCCGACATGTCTGTTCCTAATTCCAAGCCTGTTTCGCATTCGATGCCTGTTCCTGAGGGCCCCTCGAAGCTGGAGAGGAGGAATAGTACCTCAGTTATGGAGAGGAAGCCTCATCGACCTCCAATAAGGCCAGCGCTCTACGCCACTCCCGAGACAACTCCACTACCTGATTCACCCACTTCTTTCCCCCCCTCACCTTACATCGTCAACCACAAGCGCCGTGGCCCGCGCCTTCTCAAGAGTTACTCGGAGCAGGATGTATCCTTACACCAGAAATCTGGAGATGAAGAGAAACTGAATGGTTCCTTACACCAGAAACCTGGAGATGAAGAGAAACTGAATGGCATTGCCAACAATGCAGAGGCCAAGGTGGAAACTTCTCCAGTGGATGATTCACTTACTTTCACTGTACCCAAGCCAAGTCAAGTACAACATTCAAGTGGTATCCATCCTAGTGGTAGTAGCAATGGCAACATTGACACCAGTAATGGGGTTCTTAGGAGCAGTAGTGTCGAACTGGGTGCTATTAGTATGACTAATGGTTCAGCCAGGGAAGATGATTTGTTCCAGCAAGCTGCCATGGCTTCCGAAAGAGATAGTGATCGTGATGATTTCTTTGATCCAAGAGACAACATGAGTGTCACAAGTAACACAGACGGAGAGGGAAATGCTGGGACAGAGCGTTCTGCGTCTATGAGTGTACCTGCTGGGGAGTTTTACGATGCCTGGGAAGAACTTTCATCTGAGGGTGGTCATGGGAAACAGCTTTCTGCTTGTGATCTTGAAACTGAGCTGCGTGAGATGAGATTGAGTCTTGTGATGGAGATAGAAAAGCGGAAGCAAGCTGAAGAATCCTTGGATAACTTGCGAAACCAGTGGCAGAGGATTAGGCAACAGTTATCTCTTGTAGGATTGACTCTTCCTGCAGATCCCACTGTTACAACAGAGCATGAGCAGCTAGGTTCTGATCCTGCAGAAGAGCTGGGGCAACAGCTTTATCTTGCCAGGTTTGTATCAAATTCTATTGGGAGGGCCATAGCAAGGGCTGAGATGGAGGCAGAGTTGGAAGATCAAATCGAGTCGAAGAACTTTGAGATTGCTAGGTTGTGTGACAAGCTTCATAATTATGAGGCTATGAATCAGGAAATGGTTCAGAGGAACCAGGACGTCATTGAGCTGGCACGGCGTGAGAGGGAGAAGAAGGCAAAACGACAAAGGTGGGTCTGGGGCTCAATTGCTACTGCCCTCACACTTGGTACAGCAGCCTTGGCATACTCTTATTATCCATCTGGAAGAGGATCTCCAACCTACCATTCTGAGTCGTCCGAGAGTGAAAATGCAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

470

Amino Acids

51.85

Weight (kDa)

5.16

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1233
Acc36I ACCTGC 1 cut(s) 775
AccII CGCG 1 cut(s) 292
AciI CCGC 2 cut(s) 290, 898
AclWI GGATC 4 cut(s) 677, 986, 1025, 1369
AcsI RAATTY 1 cut(s) 1081
AcuI CTGAAG 1 cut(s) 930
AcyI GRCGYC 1 cut(s) 1230
AdeI CACNNNGTG 1 cut(s) 1250
AfaI GTAC 5 cut(s) 151, 474, 492, 765, 1321
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 552, 1104
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 501, 848
AjnI CCWGG 6 cut(s) 43, 382, 611, 788, 1067, 1224
AjuI GAANNNNNNNTTGG 2 cut(s) 1360, 1392
AloI GAACNNNNNNTCC 2 cut(s) 730, 762
Alw26I GTCTC 2 cut(s) 209, 684
AlwI GGATC 4 cut(s) 677, 986, 1025, 1369
Ama87I CYCGRG 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 5 cut(s) 121, 191, 286, 426, 1095
ApaI GGGCCC 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 638, 856, 1018, 1325
ApoI RAATTY 1 cut(s) 1081
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 3 cut(s) 199, 282, 294
AspS9I GGNCC 4 cut(s) 121, 122, 287, 1095
AsuHPI GGTGA 2 cut(s) 228, 249
AvaI CYCGRG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 125, 1295
BbvI GCAGC 4 cut(s) 625, 843, 1030, 1337
BccI CCATC 4 cut(s) 519, 877, 1108, 1357
BceAI ACGGC 2 cut(s) 267, 1262
BcgI CGANNNNNNTGC 4 cut(s) 556, 566, 590, 600
BciT130I CCWGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
BciVI GTATCC 2 cut(s) 334, 518
BcoDI GTCTC 2 cut(s) 209, 684
BfaI CTAG 3 cut(s) 516, 1022, 1164
BfmI CTRYAG 2 cut(s) 987, 1035
BfoI RGCGCY 2 cut(s) 200, 283
BfuAI ACCTGC 1 cut(s) 775
BfuI GTATCC 2 cut(s) 334, 518
BisI GCNGC 4 cut(s) 639, 857, 1019, 1326
BlsI GCNGC 4 cut(s) 640, 858, 1020, 1327
Bme1390I CCNGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 4 cut(s) 121, 122, 287, 1095
BmiI GGNNCC 4 cut(s) 123, 124, 367, 1223
BmrFI CCNGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 2 cut(s) 96, 775
BmuI ACTGGG 1 cut(s) 590
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 157, 189
BpmI CTGGAG 5 cut(s) 66, 155, 363, 405, 429
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 1230
BsaJI CCNNGG 7 cut(s) 283, 429, 612, 642, 789, 918, 1329
BsaXI ACNNNNNCTCC 6 cut(s) 133, 163, 556, 586, 1109, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 552, 1104
Bse1I ACTGG 4 cut(s) 446, 546, 585, 937
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 2 cut(s) 408, 535
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
BseDI CCNNGG 7 cut(s) 283, 429, 612, 642, 789, 918, 1329
BseGI GGATG 3 cut(s) 325, 457, 511
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 552, 1104
BseMI GCAATG 2 cut(s) 408, 535
BseMII CTCAG 6 cut(s) 108, 168, 798, 843, 1101, 1371
BseNI ACTGG 4 cut(s) 446, 546, 585, 937
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 4 cut(s) 625, 843, 1030, 1337
BseYI CCCAGC 3 cut(s) 734, 770, 1045
Bsh1236I CGCG 1 cut(s) 292
BshFI GGCC 5 cut(s) 123, 193, 288, 428, 1097
BsiHKCI CYCGRG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 2 cut(s) 552, 1104
BsmAI GTCTC 2 cut(s) 209, 684
BsmFI GGGAC 1 cut(s) 751
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 5 cut(s) 123, 193, 288, 428, 1097
BsoBI CYCGRG 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 125, 1295
Bsp143I GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 2 cut(s) 290, 898
BspANI GGCC 5 cut(s) 123, 193, 288, 428, 1097
BspCNI CTCAG 6 cut(s) 109, 167, 799, 844, 1102, 1372
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 4 cut(s) 123, 124, 367, 1223
BspMAI CTGCAG 2 cut(s) 991, 1039
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 4 cut(s) 677, 986, 1025, 1369
BspQI GCTCTTC 1 cut(s) 1035
BsrDI GCAATG 2 cut(s) 408, 535
BsrI ACTGG 4 cut(s) 446, 546, 585, 937
BssECI CCNNGG 7 cut(s) 283, 429, 612, 642, 789, 918, 1329
BssMI GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
BssNI GRCGYC 1 cut(s) 1230
BssT1I CCWWGG 4 cut(s) 429, 642, 918, 1329
Bst2UI CCWGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
Bst4CI ACNGT 3 cut(s) 472, 960, 1000
Bst6I CTCTTC 5 cut(s) 345, 387, 987, 1035, 1351
BstACI GRCGYC 1 cut(s) 1230
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 6 cut(s) 195, 290, 636, 906, 1242, 1405
BstDEI CTNAG 7 cut(s) 117, 154, 560, 807, 852, 1110, 1380
BstDSI CCRYGG 2 cut(s) 283, 642
BstF5I GGATG 3 cut(s) 325, 457, 511
BstFNI CGCG 1 cut(s) 292
BstH2I RGCGCY 2 cut(s) 200, 283
BstHHI GCGC 3 cut(s) 199, 282, 294
BstKTI GATC 7 cut(s) 667, 685, 844, 994, 1033, 1135, 1364
BstMAI GTCTC 2 cut(s) 209, 684
BstMBI GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
BstMWI GCNNNNNNNGC 8 cut(s) 97, 106, 203, 419, 644, 1018, 1246, 1331
BstNI CCWGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 6 cut(s) 43, 382, 611, 788, 1067, 1224
BstSFI CTRYAG 2 cut(s) 987, 1035
BstSLI GKGCMC 1 cut(s) 125
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 625, 843, 1030, 1337
BstX2I RGATCY 2 cut(s) 991, 1361
BstXI CCANNNNNNTGG 3 cut(s) 341, 383, 518
BstYI RGATCY 2 cut(s) 991, 1361
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 2 cut(s) 334, 518
BsuRI GGCC 5 cut(s) 123, 193, 288, 428, 1097
BtgI CCRYGG 2 cut(s) 283, 642
BtsCI GGATG 3 cut(s) 325, 457, 511
BtsIMutI CAGTG 4 cut(s) 453, 468, 944, 996
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 6 cut(s) 195, 290, 636, 906, 1242, 1405
CfoI GCGC 3 cut(s) 199, 282, 294
Cfr13I GGNCC 4 cut(s) 121, 122, 287, 1095
CseI GACGC 1 cut(s) 741
Csp6I GTAC 5 cut(s) 150, 473, 491, 764, 1320
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 5 cut(s) 70, 643, 697, 818, 1013
CviQI GTAC 5 cut(s) 150, 473, 491, 764, 1320
DdeI CTNAG 7 cut(s) 117, 154, 560, 807, 852, 1110, 1380
DpnI GATC 7 cut(s) 666, 684, 843, 993, 1032, 1134, 1363
DpnII GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
DraIII CACNNNGTG 1 cut(s) 1250
Eam1104I CTCTTC 5 cut(s) 345, 387, 987, 1035, 1351
EarI CTCTTC 5 cut(s) 345, 387, 987, 1035, 1351
Eco130I CCWWGG 4 cut(s) 429, 642, 918, 1329
Eco24I GRGCYC 2 cut(s) 125, 1295
Eco47III AGCGCT 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 930
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 121, 122
EcoRII CCWGG 6 cut(s) 43, 382, 611, 788, 1067, 1224
EcoT14I CCWWGG 4 cut(s) 429, 642, 918, 1329
EcoT38I GRGCYC 2 cut(s) 125, 1295
ErhI CCWWGG 4 cut(s) 429, 642, 918, 1329
FaeI CATG 5 cut(s) 73, 646, 700, 821, 1016
FaqI GGGAC 1 cut(s) 751
FatI CATG 5 cut(s) 69, 642, 696, 817, 1012
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 639, 857, 1019, 1326
FokI GGATG 3 cut(s) 332, 464, 498
FriOI GRGCYC 2 cut(s) 125, 1295
Fsp4HI GCNGC 4 cut(s) 639, 857, 1019, 1326
FspBI CTAG 3 cut(s) 516, 1022, 1164
GlaI GCGC 3 cut(s) 198, 281, 293
GluI GCNGC 4 cut(s) 639, 857, 1019, 1326
GsaI CCCAGC 3 cut(s) 738, 774, 1049
GsuI CTGGAG 5 cut(s) 66, 155, 363, 405, 429
HaeII RGCGCY 2 cut(s) 200, 283
HaeIII GGCC 5 cut(s) 123, 193, 288, 428, 1097
HgaI GACGC 1 cut(s) 741
HhaI GCGC 3 cut(s) 199, 282, 294
Hin1I GRCGYC 1 cut(s) 1230
Hin1II CATG 5 cut(s) 73, 646, 700, 821, 1016
Hin6I GCGC 3 cut(s) 197, 280, 292
HinP1I GCGC 3 cut(s) 197, 280, 292
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 8 cut(s) 233, 455, 874, 914, 979, 1142, 1201, 1382
HphI GGTGA 2 cut(s) 228, 249
Hpy166II GTNNAC 2 cut(s) 271, 764
Hpy188I TCNGA 7 cut(s) 313, 652, 808, 1030, 1218, 1381, 1390
Hpy188III TCNNGA 8 cut(s) 116, 212, 301, 342, 668, 845, 1205, 1353
Hpy8I GTNNAC 2 cut(s) 271, 764
HpyAV CCTTC 2 cut(s) 305, 1258
HpyCH4III ACNGT 3 cut(s) 472, 960, 1000
HpyCH4IV ACGT 1 cut(s) 1230
HpyCH4V TGCA 4 cut(s) 422, 989, 1037, 1403
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 106, 203, 419, 644, 1018, 1246, 1331
HpyF3I CTNAG 7 cut(s) 117, 154, 560, 807, 852, 1110, 1380
HpySE526I ACGT 1 cut(s) 1230
Hsp92I GRCGYC 1 cut(s) 1230
Hsp92II CATG 5 cut(s) 73, 646, 700, 821, 1016
HspAI GCGC 3 cut(s) 197, 280, 292
Kzo9I GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 3 cut(s) 47, 313, 564
Lsp1109I GCAGC 4 cut(s) 625, 843, 1030, 1337
LweI GCATC 2 cut(s) 96, 775
MaeI CTAG 3 cut(s) 516, 1022, 1164
MaeII ACGT 1 cut(s) 1230
MaeIII GTNAC 5 cut(s) 305, 703, 710, 1000, 1172
MalI GATC 7 cut(s) 666, 684, 843, 993, 1032, 1134, 1363
MboI GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
MfeI CAATTG 1 cut(s) 1296
MflI RGATCY 2 cut(s) 991, 1361
MhlI GDGCHC 2 cut(s) 125, 1295
MluCI AATT 4 cut(s) 82, 1081, 1186, 1296
MlyI GAGTC 4 cut(s) 883, 973, 1151, 1391
MmeI TCCRAC 2 cut(s) 1107, 1391
MroXI GAANNNNTTC 1 cut(s) 1212
MslI CAYNNNNRTG 3 cut(s) 501, 516, 1188
MspR9I CCNGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
MunI CAATTG 1 cut(s) 1296
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 8 cut(s) 97, 106, 203, 419, 644, 1018, 1246, 1331
NcoI CCATGG 1 cut(s) 642
NdeII GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
NlaIII CATG 5 cut(s) 73, 646, 700, 821, 1016
NlaIV GGNNCC 4 cut(s) 123, 124, 367, 1223
NmuCI GTSAC 2 cut(s) 703, 1172
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 1212
PfeI GAWTC 4 cut(s) 233, 455, 914, 1201
PkrI GCNGC 4 cut(s) 640, 858, 1020, 1327
PleI GAGTC 4 cut(s) 882, 973, 1150, 1390
PpsI GAGTC 4 cut(s) 882, 973, 1150, 1390
PscI ACATGT 1 cut(s) 69
Psp6I CCWGG 6 cut(s) 43, 382, 611, 788, 1067, 1224
PspFI CCCAGC 3 cut(s) 734, 770, 1045
PspGI CCWGG 6 cut(s) 43, 382, 611, 788, 1067, 1224
PspN4I GGNNCC 4 cut(s) 123, 124, 367, 1223
PspOMI GGGCCC 1 cut(s) 121
PspPI GGNCC 4 cut(s) 121, 122, 287, 1095
PstI CTGCAG 2 cut(s) 991, 1039
PsuI RGATCY 2 cut(s) 991, 1361
RsaI GTAC 5 cut(s) 151, 474, 492, 765, 1321
RsaNI GTAC 5 cut(s) 150, 473, 491, 764, 1320
RseI CAYNNNNRTG 3 cut(s) 501, 516, 1188
SapI GCTCTTC 1 cut(s) 1035
SatI GCNGC 4 cut(s) 639, 857, 1019, 1326
Sau3AI GATC 7 cut(s) 664, 682, 841, 991, 1030, 1132, 1361
Sau96I GGNCC 4 cut(s) 121, 122, 287, 1095
SchI GAGTC 4 cut(s) 883, 973, 1151, 1391
ScrFI CCNGG 6 cut(s) 45, 384, 613, 790, 1069, 1226
SduI GDGCHC 2 cut(s) 125, 1295
SfaNI GCATC 2 cut(s) 96, 775
SfcI CTRYAG 2 cut(s) 987, 1035
SmiMI CAYNNNNRTG 3 cut(s) 501, 516, 1188
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 82, 1081, 1186, 1296
SsiI CCGC 2 cut(s) 290, 898
SspMI CTAG 3 cut(s) 516, 1022, 1164
StyD4I CCNGG 6 cut(s) 43, 382, 611, 788, 1067, 1224
StyI CCWWGG 4 cut(s) 429, 642, 918, 1329
TaaI ACNGT 3 cut(s) 472, 960, 1000
TaiI ACGT 1 cut(s) 1233
TaqI TCGA 6 cut(s) 104, 128, 178, 576, 1140, 1145
TasI AATT 4 cut(s) 82, 1081, 1186, 1296
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 4 cut(s) 233, 455, 914, 1201
TscAI CASTG 4 cut(s) 453, 475, 944, 1003
TseFI GTSAC 2 cut(s) 703, 1172
TseI GCWGC 4 cut(s) 638, 856, 1018, 1325
Tsp45I GTSAC 2 cut(s) 703, 1172
TspDTI ATGAA 5 cut(s) 363, 405, 792, 1172, 1214
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 4 cut(s) 453, 475, 944, 1003
XapI RAATTY 1 cut(s) 1081
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 3 cut(s) 516, 1022, 1164
ZraI GACGTC 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.