Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Reverse (-)

18950918 .. 18952109

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTTCGGAAGAAGGACAAGTGATCGCCTGCCACACCGTTGAGACATGGAACGAGCAGCTTCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGATTTCACGGCTTCTTGGTGTGGACCATGTCGTTTCATCGCTCCATTCTTTGCTGATTTGGCTAAGAAACTTCCTAACGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCAAGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTTTTGAAGGAAGGGAAGATTTTGGACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAGTCTACCATTGCCAAACACTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

5.64

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	10 - 110	1.9e-30	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	47, 299
AgsI	TTSAA	2 cut(s)	211, 265
AluBI	AGCT	2 cut(s)	61, 313
AluI	AGCT	2 cut(s)	61, 313
Alw26I	GTCTC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	324
BssMI	GATC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 239
BstV1I	GCAGC	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	337
BtgZI	GCGATG	2 cut(s)	121, 257
Cac8I	GCNNGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	3 cut(s)	48, 126, 256
CviJI	RGCY	8 cut(s)	5, 61, 71, 110, 161, 299, 313, 341
CviKI_1	RGCY	8 cut(s)	5, 61, 71, 110, 161, 299, 313, 341
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	47, 299
FaeI	CATG	3 cut(s)	51, 129, 259
FaiI	YATR	3 cut(s)	49, 127, 257
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	3 cut(s)	47, 125, 255
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	51, 129, 259
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	122, 321
Hpy188I	TCNGA	2 cut(s)	10, 66
Hpy8I	GTNNAC	2 cut(s)	122, 321
HpyAV	CCTTC	5 cut(s)	8, 61, 259, 262, 263
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 239
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	51, 129, 259
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	145, 296
LpnPI	CCDG	2 cut(s)	43, 224
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	177
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	23, 286
MluCI	AATT	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	158, 239
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	51, 129, 259
NlaIV	GGNNCC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	122
SetI	ASST	5 cut(s)	63, 180, 195, 254, 315
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	180
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	90, 124, 219, 244
Tth111I	GACNNNGTC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.