Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Reverse (-)

61514372 .. 61515929

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG435600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCGCAGAAGAGGGACAAGTCATCGCCTGCCACACCACTGAGGCTTGGGACGAACAGCTCACGAAGGGAAAAGAGACCAAGAAGCTGATTGTGGTGGACTTCACTGCTTCATGGTGTGGACCATGCCGTTTCATTGCCCCAATCTTGGCAGAGCTGGCCAGGAAGACCCCGGAGGTCACATTCCTGAAGGTGGATGTTGATGAGCTGAAGACGGTTGCTGAGGACTGGTCTGTGGAGGCAATGCCTACCTTTGTGTTCCTTAAAGAAGGCAAGATTGTCGACAAGGTTGTTGGTGCCAAGAAAGATGAGCTTGTGCTCAAAGTAAGCCAGCATATTGCTGCTGCTGCAACTGCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

121

Amino Acids

13.2

Weight (kDa)

5.2

Isoelectric Point (pI)

20.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	9 - 108	1.6e-29	Thioredoxin
Thioredoxin_2	PF13098	25 - 104	5.2e-06	Thioredoxin-like domain
Thioredoxin_9	PF14595	25 - 91	2.7e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	2 cut(s)	3, 159
AcuI	CTGAAG	2 cut(s)	209, 230
AfiI	CCNNNNNNNGG	2 cut(s)	148, 193
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	61, 88, 157, 208, 313
AluI	AGCT	5 cut(s)	61, 88, 157, 208, 313
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	2 cut(s)	3, 159
ApeKI	GCWGC	3 cut(s)	341, 344, 347
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	173, 218
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	328, 331, 334
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	4 cut(s)	6, 342, 345, 348
BlsI	GCNGC	4 cut(s)	7, 343, 346, 349
Bme1390I	CCNGG	2 cut(s)	163, 173
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	163, 173
BpiI	GAAGAC	2 cut(s)	173, 218
Bpu10I	CCTNAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 193
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	135, 249
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	148, 193
BseMI	GCAATG	2 cut(s)	135, 249
BseMII	CTCAG	2 cut(s)	33, 213
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	328, 331, 334
BshFI	GGCC	2 cut(s)	5, 161
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	30, 65
BslI	CCNNNNNNNGG	2 cut(s)	148, 193
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	30, 65
BsnI	GGCC	2 cut(s)	5, 161
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 161
BspCNI	CTCAG	2 cut(s)	34, 214
BspLI	GGNNCC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	135, 249
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	31, 159, 332
BstDEI	CTNAG	3 cut(s)	42, 222, 363
BstF5I	GGATG	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 347, 353
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	161, 171
BstV1I	GCAGC	3 cut(s)	328, 331, 334
BstV2I	GAAGAC	2 cut(s)	173, 218
BsuRI	GGCC	2 cut(s)	5, 161
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	39, 105
Cac8I	GCNNGC	3 cut(s)	31, 159, 332
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	2 cut(s)	114, 126
CviJI	RGCY	9 cut(s)	5, 47, 61, 88, 157, 161, 208, 313, 330
CviKI_1	RGCY	9 cut(s)	5, 47, 61, 88, 157, 161, 208, 313, 330
DdeI	CTNAG	3 cut(s)	42, 222, 363
EaeI	YGGCCR	2 cut(s)	3, 159
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	209, 230
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	117, 129
FaiI	YATR	3 cut(s)	115, 127, 336
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	2 cut(s)	30, 65
FatI	CATG	2 cut(s)	113, 125
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	6, 342, 345, 348
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	6, 342, 345, 348
GluI	GCNGC	4 cut(s)	6, 342, 345, 348
HaeIII	GGCC	2 cut(s)	5, 161
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	2 cut(s)	117, 129
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	100, 122, 283
Hpy188III	TCNNGA	2 cut(s)	64, 187
Hpy8I	GTNNAC	3 cut(s)	100, 122, 283
HpyAV	CCTTC	3 cut(s)	61, 184, 263
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	350, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 347, 353
HpyF3I	CTNAG	3 cut(s)	42, 222, 363
Hsp92II	CATG	2 cut(s)	117, 129
LpnPI	CCDG	8 cut(s)	43, 143, 148, 175, 186, 200, 214, 344
Lsp1109I	GCAGC	3 cut(s)	328, 331, 334
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	23, 178, 223
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MnlI	CCTC	5 cut(s)	7, 37, 169, 217, 232
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	163, 173
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	158, 347, 353
NciI	CCSGG	1 cut(s)	173
NlaIII	CATG	2 cut(s)	117, 129
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	7, 343, 346, 349
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	6, 342, 345, 348
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	163, 173
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	9 cut(s)	63, 90, 159, 180, 195, 210, 254, 291, 315
SinI	GGWCC	1 cut(s)	122
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	161, 171
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	282
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	46, 112
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	341, 344, 347
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	102, 124
TspRI	CASTG	2 cut(s)	46, 112
VpaK11BI	GGWCC	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.