Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Reverse (-)

11465296 .. 11467066

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAGCAGAGGAGGGGCAAGTCGTCAGTGTCCACACTGTGGATGCATGGAACGAGCAGCTTCAGAAGGGAAACGACACCAAGAAACTGATGGTTGTTGATTTCACTGCTTCATGGTGTGGACCATGCCGCTTCATTGCGCCATTCTTGTCAGAGCTGGCCAAGAAGCTTCCAAATGTCATCTTCGTAAAGATTGATGTGGATGAGTTGAAGTCGGTTGCTCAAGATTGGGCTGTAGAGGCAATGCCGACTTTCATGTTTCTGAAAGAAGGAAAGATTGTGGACAAAGTGGTGGGAGCAAAAAAAGAGGAACTGCAGCAGACTGTAGCAAAGCACGTAGCTACTGCTTCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

119

Amino Acids

13.02

Weight (kDa)

5.66

Isoelectric Point (pI)

18.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	9 - 110	4.8e-31	Thioredoxin
Thioredoxin_2	PF13098	27 - 106	9.9e-06	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AciI	CCGC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	4 cut(s)	61, 157, 169, 341
AluI	AGCT	4 cut(s)	61, 157, 169, 341
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	3 cut(s)	5, 58, 316
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	17, 70, 328
BccI	CCATC	1 cut(s)	85
BfmI	CTRYAG	3 cut(s)	234, 314, 324
BisI	GCNGC	4 cut(s)	6, 59, 130, 317
BlsI	GCNGC	4 cut(s)	7, 60, 131, 318
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmsI	GCATC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	2 cut(s)	135, 249
BseGI	GGATG	2 cut(s)	49, 208
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	135, 249
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	17, 70, 328
BshFI	GGCC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	1 cut(s)	161
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	135, 249
Bst4CI	ACNGT	2 cut(s)	40, 325
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	49, 208
BstHHI	GCGC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSFI	CTRYAG	3 cut(s)	234, 314, 324
BstV1I	GCAGC	3 cut(s)	17, 70, 328
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	49, 208
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	34, 36, 105
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	4 cut(s)	48, 114, 126, 256
CviJI	RGCY	6 cut(s)	61, 157, 161, 169, 233, 341
CviKI_1	RGCY	6 cut(s)	61, 157, 161, 169, 233, 341
DraIII	CACNNNGTG	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	4 cut(s)	51, 117, 129, 259
FaiI	YATR	4 cut(s)	49, 115, 127, 257
FatI	CATG	4 cut(s)	47, 113, 125, 255
Fnu4HI	GCNGC	4 cut(s)	6, 59, 130, 317
FokI	GGATG	2 cut(s)	56, 215
Fsp4HI	GCNGC	4 cut(s)	6, 59, 130, 317
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	4 cut(s)	6, 59, 130, 317
HaeIII	GGCC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	4 cut(s)	51, 117, 129, 259
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	34, 122, 283
Hpy188I	TCNGA	3 cut(s)	66, 154, 264
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	3 cut(s)	34, 122, 283
HpyAV	CCTTC	2 cut(s)	61, 263
HpyCH4III	ACNGT	2 cut(s)	40, 325
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	47, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	51, 117, 129, 259
HspAI	GCGC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	1 cut(s)	143
Lsp1109I	GCAGC	3 cut(s)	17, 70, 328
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	336
MboII	GAAGA	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MnlI	CCTC	4 cut(s)	4, 7, 232, 301
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	51, 117, 129, 259
NsiI	ATGCAT	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	7, 60, 131, 318
Ppu21I	YACGTR	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	318
SatI	GCNGC	4 cut(s)	6, 59, 130, 317
Sau96I	GGNCC	1 cut(s)	122
SetI	ASST	5 cut(s)	63, 159, 171, 339, 343
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	3 cut(s)	234, 314, 324
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SsiI	CCGC	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	40, 325
TaiI	ACGT	1 cut(s)	339
TauI	GCSGC	1 cut(s)	132
TscAI	CASTG	3 cut(s)	34, 43, 112
TseI	GCWGC	3 cut(s)	5, 58, 316
TspDTI	ATGAA	3 cut(s)	102, 124, 244
TspRI	CASTG	3 cut(s)	34, 43, 112
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.