Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Reverse (-)

16830463 .. 16832852

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G163200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGCAGAGGAGGGACAAGTTGTCAGTTGCCATACTCTCGATGCATGGAACGAGCAGCTCCAGAAGGGCAACGACTCCAAGAAGCTGATGGTCATTGATTTCACTGCTTCATGGTGTGGACCATGCCGCTTCATCGCACCTTTCCTGGCAGAGTTGGCTAAGAAACTGCCAAATGTCATATTCGTAAAGGTTGATGTGGATGAGTTGAAGTCTGTGGCTCAAGACTGGGCCGTAGAGGCAATGCCAACATTCATGTTCCTGAAAGAAGGGAAGATAGTGGACAAAGTGGTGGGAGCAAAGAAAGACGAGCTGCAGCAGACTATAGCAAAGCACGTTGCTGCTGCTTCTGCTTCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

121

Amino Acids

13.14

Weight (kDa)

5.65

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	211
AhdI	GACNNNNNGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	61, 88, 313
AluI	AGCT	3 cut(s)	61, 88, 313
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	6 cut(s)	5, 58, 313, 316, 341, 344
AspS9I	GGNCC	2 cut(s)	122, 231
AvaII	GGWCC	1 cut(s)	122
BbvI	GCAGC	6 cut(s)	17, 70, 300, 328, 328, 331
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	314, 324
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	7 cut(s)	6, 59, 130, 314, 317, 342, 345
BlsI	GCNGC	7 cut(s)	7, 60, 131, 315, 318, 343, 346
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	122
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	122, 231
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	6 cut(s)	17, 70, 300, 328, 328, 331
BshFI	GGCC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 239, 350
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	314, 324
BstV1I	GCAGC	6 cut(s)	17, 70, 300, 328, 328, 331
BsuRI	GGCC	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	122, 231
CviAII	CATG	4 cut(s)	48, 114, 126, 256
CviJI	RGCY	6 cut(s)	61, 88, 161, 221, 233, 313
CviKI_1	RGCY	6 cut(s)	61, 88, 161, 221, 233, 313
DdeI	CTNAG	1 cut(s)	162
DriI	GACNNNNNGTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	4 cut(s)	51, 117, 129, 259
FaiI	YATR	7 cut(s)	36, 49, 115, 127, 182, 257, 326
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	4 cut(s)	47, 113, 125, 255
Fnu4HI	GCNGC	7 cut(s)	6, 59, 130, 314, 317, 342, 345
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	7 cut(s)	6, 59, 130, 314, 317, 342, 345
GluI	GCNGC	7 cut(s)	6, 59, 130, 314, 317, 342, 345
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	51, 117, 129, 259
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	122, 283
Hpy188III	TCNNGA	4 cut(s)	41, 64, 224, 262
Hpy8I	GTNNAC	2 cut(s)	122, 283
HpyAV	CCTTC	2 cut(s)	61, 263
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	47, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 239, 350
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	51, 117, 129, 259
LmnI	GCTCC	2 cut(s)	66, 296
LpnPI	CCDG	5 cut(s)	77, 134, 161, 214, 275
Lsp1109I	GCAGC	6 cut(s)	17, 70, 300, 328, 328, 331
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	336
MboII	GAAGA	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	4, 7, 232
Mph1103I	ATGCAT	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	158, 239, 350
NlaIII	CATG	4 cut(s)	51, 117, 129, 259
NsiI	ATGCAT	1 cut(s)	49
PkrI	GCNGC	7 cut(s)	7, 60, 131, 315, 318, 343, 346
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	122, 231
PstI	CTGCAG	1 cut(s)	318
SatI	GCNGC	7 cut(s)	6, 59, 130, 314, 317, 342, 345
Sau96I	GGNCC	2 cut(s)	122, 231
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	6 cut(s)	63, 90, 145, 195, 315, 339
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	314, 324
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SsiI	CCGC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	42
TauI	GCSGC	1 cut(s)	132
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	6 cut(s)	5, 58, 313, 316, 341, 344
TspDTI	ATGAA	3 cut(s)	102, 124, 244
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.