Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Forward (+)

33919967 .. 33921168

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGGAGGAAAATCAAGTCATCGGCTGCCACACTACTCAAGCCTGGGAAGAGCAGCTCCATAAGGGAAACGAGAACAAGAAACTGGTGGTGGTGGATTTCACGGCTTCGTGGTGTGGACCGTGCCGGTTGATCGCCCCAATCTTGGCGGAGTTGGCTAAGAAGACCCCAGAAGTGACGTTCCTAAAGGTGGACGTGGATGAACTGAGGACTGTTTCCGAGGAGTGGGGTGTGGAGGCAATGCCTACCTTCCTCTTCCTCAAGGAAGGCAAGATAGTGGACAAGGTTGTGGGTGCCAAGAAAGACGAGTTACAGATCAAAGTTGCCAAGCATGTCGCCGCTGCCGCCGCTGCCTCCGCCACCTCTGCCTCTGCCACCGCTGCTACAGCTACTGCTACTGCATCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

137

Amino Acids

14.49

Weight (kDa)

5.62

Isoelectric Point (pI)

20.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	7 cut(s)	5, 149, 339, 345, 348, 357, 378
AfiI	CCNNNNNNNGG	3 cut(s)	145, 190, 225
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	58, 389
AluI	AGCT	2 cut(s)	58, 389
AlwNI	CAGNNNCTG	1 cut(s)	392
ApeKI	GCWGC	5 cut(s)	27, 55, 341, 350, 380
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	5 cut(s)	14, 67, 328, 337, 367
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	8 cut(s)	28, 56, 339, 342, 345, 348, 351, 381
BlsI	GCNGC	8 cut(s)	29, 57, 340, 343, 346, 349, 352, 382
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	24, 245
BsaJI	CCNNGG	2 cut(s)	45, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 190, 225
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	45, 219
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	3 cut(s)	145, 190, 225
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	5 cut(s)	14, 67, 328, 337, 367
BshNI	GGYRCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	3 cut(s)	145, 190, 225
Bsp143I	GATC	2 cut(s)	132, 315
BspACI	CCGC	7 cut(s)	5, 149, 339, 345, 348, 357, 378
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	45, 219
BssMI	GATC	2 cut(s)	132, 315
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	123, 214
Bst6I	CTCTTC	2 cut(s)	45, 260
BstDEI	CTNAG	2 cut(s)	159, 206
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	2 cut(s)	135, 318
BstMBI	GATC	2 cut(s)	132, 315
BstMWI	GCNNNNNNNGC	8 cut(s)	155, 344, 347, 350, 356, 365, 380, 386
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	5 cut(s)	14, 67, 328, 337, 367
BstV2I	GAAGAC	1 cut(s)	170
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	6 cut(s)	27, 44, 58, 107, 158, 389
CviKI_1	RGCY	6 cut(s)	27, 44, 58, 107, 158, 389
DdeI	CTNAG	2 cut(s)	159, 206
DpnI	GATC	2 cut(s)	134, 317
DpnII	GATC	2 cut(s)	132, 315
Eam1104I	CTCTTC	2 cut(s)	45, 260
EarI	CTCTTC	2 cut(s)	45, 260
EciI	GGCGGA	3 cut(s)	20, 164, 346
Eco47I	GGWCC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	335
FaiI	YATR	2 cut(s)	63, 333
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	8 cut(s)	28, 56, 339, 342, 345, 348, 351, 381
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	8 cut(s)	28, 56, 339, 342, 345, 348, 351, 381
GluI	GCNGC	8 cut(s)	28, 56, 339, 342, 345, 348, 351, 381
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	1 cut(s)	335
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	119, 193, 280
Hpy188I	TCNGA	1 cut(s)	220
Hpy8I	GTNNAC	3 cut(s)	119, 193, 280
HpyAV	CCTTC	2 cut(s)	259, 260
HpyCH4III	ACNGT	2 cut(s)	123, 214
HpyCH4IV	ACGT	2 cut(s)	179, 195
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	8 cut(s)	155, 344, 347, 350, 356, 365, 380, 386
HpyF3I	CTNAG	2 cut(s)	159, 206
HpySE526I	ACGT	2 cut(s)	179, 195
Hsp92II	CATG	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	132, 315
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	31, 58, 71, 140, 183
Lsp1109I	GCAGC	5 cut(s)	14, 67, 328, 337, 367
MaeII	ACGT	2 cut(s)	179, 195
MaeIII	GTNAC	2 cut(s)	175, 309
MalI	GATC	2 cut(s)	134, 317
MboI	GATC	2 cut(s)	132, 315
MboII	GAAGA	3 cut(s)	62, 175, 247
MnlI	CCTC	8 cut(s)	201, 214, 229, 263, 269, 364, 373, 379
MseI	TTAA	1 cut(s)	409
MspA1I	CMGCKG	3 cut(s)	341, 350, 380
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	8 cut(s)	155, 344, 347, 350, 356, 365, 380, 386
NdeII	GATC	2 cut(s)	132, 315
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	45
PkrI	GCNGC	8 cut(s)	29, 57, 340, 343, 346, 349, 352, 382
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	8 cut(s)	28, 56, 339, 342, 345, 348, 351, 381
Sau3AI	GATC	2 cut(s)	132, 315
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	8 cut(s)	60, 182, 192, 198, 251, 288, 365, 391
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	39, 260
SmoI	CTYRAG	2 cut(s)	39, 260
SsiI	CCGC	7 cut(s)	5, 149, 339, 345, 348, 357, 378
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	123, 214
TaiI	ACGT	2 cut(s)	182, 198
TauI	GCSGC	3 cut(s)	341, 347, 350
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	5 cut(s)	27, 55, 341, 350, 380
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.