Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Reverse (-)

11810586 .. 11813046

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCAGATGGTTGTTGATTTCACTGCTTCATGGTGTGGACCATGCCGCTTCATTGCGCCATTCTTGTCAGAGCTGGCCAAGAAGCTTCCAAATGTCATCTTCGTAAAGATTGATGTGGATGAGTTGAAGTCGGTTGCCCAAGATTGGGCTGTAGAGGCAATGCCGACCTTCATGTTTCTGAAAGAAGGGAAGATTGTGGACAAAGTGGTGGGAGCAAGGAAAGAGGAACTGCAGCAGACTGTAGCAAAGCACGTAGCTACTGCTTCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

6.55

Isoelectric Point (pI)

16.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	2 - 82	2.2e-28	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	144, 145
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	3 cut(s)	73, 85, 257
AluI	AGCT	3 cut(s)	73, 85, 257
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	244
BfmI	CTRYAG	3 cut(s)	150, 230, 240
BisI	GCNGC	2 cut(s)	46, 233
BlsI	GCNGC	2 cut(s)	47, 234
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 145
Bse3DI	GCAATG	2 cut(s)	51, 165
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	144, 145
BseMI	GCAATG	2 cut(s)	51, 165
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	144, 145
BsnI	GGCC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	51, 165
Bst4CI	ACNGT	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	3 cut(s)	150, 230, 240
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	38
CviAII	CATG	3 cut(s)	30, 42, 172
CviJI	RGCY	5 cut(s)	73, 77, 85, 149, 257
CviKI_1	RGCY	5 cut(s)	73, 77, 85, 149, 257
EaeI	YGGCCR	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	38
FaeI	CATG	3 cut(s)	33, 45, 175
FaiI	YATR	3 cut(s)	31, 43, 173
FatI	CATG	3 cut(s)	29, 41, 171
Fnu4HI	GCNGC	2 cut(s)	46, 233
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	46, 233
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	46, 233
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	33, 45, 175
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	38, 199
Hpy188I	TCNGA	2 cut(s)	70, 180
Hpy8I	GTNNAC	2 cut(s)	38, 199
HpyAV	CCTTC	2 cut(s)	178, 179
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	4, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	33, 45, 175
HspAI	GCGC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	252
MboII	GAAGA	2 cut(s)	91, 202
MlsI	TGGCCA	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	77
MnlI	CCTC	2 cut(s)	148, 217
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	33, 45, 175
PkrI	GCNGC	2 cut(s)	47, 234
Ppu21I	YACGTR	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	234
SatI	GCNGC	2 cut(s)	46, 233
Sau96I	GGNCC	1 cut(s)	38
SetI	ASST	5 cut(s)	75, 87, 170, 255, 259
SfcI	CTRYAG	3 cut(s)	150, 230, 240
SgeI	CNNG	9 cut(s)	42, 54, 76, 86, 91, 152, 184, 228, 263
SinI	GGWCC	1 cut(s)	38
SsiI	CCGC	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	255
TauI	GCSGC	1 cut(s)	48
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	18, 40, 160
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.