Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Forward (+)

1691094 .. 1693387

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1023500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCAGAAGAAAAAGTCATCGGCTGCCACTCTGTTGCCGCCTGGACCGAGCACCTCGAGAAGAGCCACGTCAGCAAGAAACTGATTGTGGTCGACTTCACAGCTACATGGTGTGGACCGTGCCGGTTCATTGCCCCCATCTTCGCGGAGTTGGCCAGGAAGAACCCGGAGGTGACATTCCTAAAGGTGGACGTGGATGAGCTGAAAACTGTTTCCGAGGAGTGGGGAGTGGAGGCAATGCCGACCTTCTTGTTCCTCAAGGAAGGCAAGGTAGTCGACAAGGTTGTGGGTGCTAAGAAAGACGAGTTACAGCTCAAAGTTGCGAAGCATGCAACTGTTGATGAACCCGCTACTGCTGGTGATCCCGCGACTGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

128

Amino Acids

13.89

Weight (kDa)

5.56

Isoelectric Point (pI)

18.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	11 - 107	4.3e-28	Thioredoxin
Thioredoxin_9	PF14595	20 - 89	1.2e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 276
AccII	CGCG	2 cut(s)	146, 368
AciI	CCGC	4 cut(s)	39, 146, 348, 366
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	187, 222
AjiI	CACGTC	2 cut(s)	70, 193
AjnI	CCWGG	2 cut(s)	41, 155
AluBI	AGCT	3 cut(s)	104, 202, 313
AluI	AGCT	3 cut(s)	104, 202, 313
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	45, 116
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	184, 371
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	45, 116
BalI	TGGCCA	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	43, 157
BcnI	CCSGG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	25, 39
BlsI	GCNGC	2 cut(s)	26, 40
Bme1390I	CCNGG	3 cut(s)	43, 157, 167
Bme18I	GGWCC	2 cut(s)	45, 116
BmeT110I	CYCGRG	1 cut(s)	56
BmgBI	CACGTC	2 cut(s)	70, 193
BmgT120I	GGNCC	2 cut(s)	45, 116
BmrFI	CCNGG	3 cut(s)	43, 157, 167
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 222
Bse118I	RCCGGY	1 cut(s)	123
Bse3DI	GCAATG	2 cut(s)	129, 243
BseBI	CCWGG	2 cut(s)	43, 157
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	187, 222
BseMI	GCAATG	2 cut(s)	129, 243
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	11
Bsh1236I	CGCG	2 cut(s)	146, 368
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	124, 167
BslI	CCNNNNNNNGG	2 cut(s)	187, 222
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	4 cut(s)	39, 146, 348, 366
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	2 cut(s)	146, 368
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	129, 243
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	43, 157
Bst4CI	ACNGT	3 cut(s)	120, 211, 337
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	146, 368
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 152, 329
BstNI	CCWGG	2 cut(s)	43, 157
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	41, 155, 165
BstUI	CGCG	2 cut(s)	146, 368
BstV1I	GCAGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	2 cut(s)	70, 193
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	45, 116
CviAII	CATG	2 cut(s)	108, 329
CviJI	RGCY	6 cut(s)	24, 66, 104, 155, 202, 313
CviKI_1	RGCY	6 cut(s)	24, 66, 104, 155, 202, 313
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	45, 116
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	41, 155
FaeI	CATG	2 cut(s)	111, 332
FaiI	YATR	2 cut(s)	109, 330
FatI	CATG	2 cut(s)	107, 328
FauI	CCCGC	2 cut(s)	355, 373
FblI	GTMKAC	2 cut(s)	93, 276
Fnu4HI	GCNGC	2 cut(s)	25, 39
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	25, 39
GluI	GCNGC	2 cut(s)	25, 39
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	124, 167
Hin1II	CATG	2 cut(s)	111, 332
HincII	GTYRAC	2 cut(s)	94, 277
HindII	GTYRAC	2 cut(s)	94, 277
HpaII	CCGG	2 cut(s)	124, 167
HphI	GGTGA	2 cut(s)	184, 371
Hpy166II	GTNNAC	4 cut(s)	94, 116, 190, 277
Hpy188I	TCNGA	2 cut(s)	7, 217
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	4 cut(s)	94, 116, 190, 277
HpyAV	CCTTC	2 cut(s)	256, 257
HpyCH4III	ACNGT	3 cut(s)	120, 211, 337
HpyCH4IV	ACGT	2 cut(s)	69, 192
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 152, 329
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	69, 192
Hsp92II	CATG	2 cut(s)	111, 332
Kzo9I	GATC	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	28, 55, 137, 142, 169, 180, 342
Lsp1109I	GCAGC	1 cut(s)	11
MaeII	ACGT	2 cut(s)	69, 192
MaeIII	GTNAC	2 cut(s)	172, 306
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	4 cut(s)	20, 73, 133, 172
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	5 cut(s)	65, 163, 211, 226, 266
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	124, 167
MspR9I	CCNGG	3 cut(s)	43, 157, 167
MvaI	CCWGG	2 cut(s)	43, 157
MvnI	CGCG	2 cut(s)	146, 368
MwoI	GCNNNNNNNGC	3 cut(s)	72, 152, 329
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	111, 332
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	26, 40
Psp6I	CCWGG	2 cut(s)	41, 155
PspGI	CCWGG	2 cut(s)	41, 155
PspPI	GGNCC	2 cut(s)	45, 116
SalI	GTCGAC	2 cut(s)	92, 275
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	2 cut(s)	25, 39
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	45, 116
ScrFI	CCNGG	3 cut(s)	43, 157, 167
SduI	GDGCHC	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	45, 116
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	56, 257
SmoI	CTYRAG	2 cut(s)	56, 257
SphI	GCATGC	1 cut(s)	332
SsiI	CCGC	4 cut(s)	39, 146, 348, 366
StyD4I	CCNGG	3 cut(s)	41, 155, 165
TaaI	ACNGT	3 cut(s)	120, 211, 337
TaiI	ACGT	2 cut(s)	72, 195
TaqI	TCGA	3 cut(s)	57, 93, 276
TaqII	GACCGA	1 cut(s)	62
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	118, 357
VpaK11BI	GGWCC	2 cut(s)	45, 116
XceI	RCATGY	1 cut(s)	332
XhoI	CTCGAG	1 cut(s)	56
XmiI	GTMKAC	2 cut(s)	93, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.