Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Forward (+)

7744869 .. 7745965

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCGCCGCAGAAGAGGGACAAGTCATCGCCTGCCACACCACTGAGGCTTGGGACGAACAGCTCAGGAAGGGAAACGAGACCAAGAAGCTGATTGTGGTGGACTTCACTGCTTCATGGTGTGGACCATGCCGTTTCATTGCCCCAATCCTGGCAGAGCTGGCCAGGAAGACCCCGGAGGTTACATTCCTGAAGGTGGATGTTGATGAGCTGAAGAAGGTTGCTGAGGACTGGGCTGTGGAGGCAATGCCTACCTTTATGTTCCTTAAAGAAGGCAAGATTGTCGACAAGGTTGTCGGTGCTAAGAAAGATGAGCTTGTGCTCAAAGTAGGCCAGCATGCTGCTGCAGCTACTGCTGCAACTGCATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

125

Amino Acids

13.46

Weight (kDa)

5.42

Isoelectric Point (pI)

13.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	10 - 107	9.5e-30	Thioredoxin
Thioredoxin_9	PF14595	23 - 92	5e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	6, 9
AcoI	YGGCCR	2 cut(s)	3, 162
AcuI	CTGAAG	2 cut(s)	212, 233
AfiI	CCNNNNNNNGG	2 cut(s)	151, 196
AjnI	CCWGG	2 cut(s)	150, 164
AluBI	AGCT	6 cut(s)	64, 91, 160, 211, 316, 350
AluI	AGCT	6 cut(s)	64, 91, 160, 211, 316, 350
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	3, 162, 331
ApeKI	GCWGC	4 cut(s)	341, 344, 347, 356
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	4 cut(s)	328, 331, 343, 359
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	2 cut(s)	152, 166
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	6 cut(s)	6, 9, 342, 345, 348, 357
BlsI	GCNGC	6 cut(s)	7, 10, 343, 346, 349, 358
Bme1390I	CCNGG	3 cut(s)	152, 166, 176
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	3 cut(s)	152, 166, 176
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	176
Bpu10I	CCTNAGC	2 cut(s)	65, 225
BpuMI	CCSGG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 196
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	138, 252
BseBI	CCWGG	2 cut(s)	152, 166
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	151, 196
BseMI	GCAATG	2 cut(s)	138, 252
BseMII	CTCAG	3 cut(s)	36, 79, 216
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	328, 331, 343, 359
BshFI	GGCC	3 cut(s)	5, 164, 333
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	33, 68
BslI	CCNNNNNNNGG	2 cut(s)	151, 196
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	33, 68
BsnI	GGCC	3 cut(s)	5, 164, 333
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	324
BspACI	CCGC	2 cut(s)	6, 9
BspANI	GGCC	3 cut(s)	5, 164, 333
BspCNI	CTCAG	3 cut(s)	37, 78, 217
BspMAI	CTGCAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	138, 252
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	152, 166
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	4 cut(s)	34, 162, 335, 339
BstDEI	CTNAG	5 cut(s)	45, 65, 225, 303, 372
BstF5I	GGATG	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 242, 347, 353, 356, 362
BstNI	CCWGG	2 cut(s)	152, 166
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	150, 164, 174
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	4 cut(s)	328, 331, 343, 359
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	5, 164, 333
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	42, 108
Cac8I	GCNNGC	4 cut(s)	34, 162, 335, 339
CaiI	CAGNNNCTG	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	3 cut(s)	117, 129, 338
DdeI	CTNAG	5 cut(s)	45, 65, 225, 303, 372
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	2 cut(s)	3, 162
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	212, 233
EcoRII	CCWGG	2 cut(s)	150, 164
FaeI	CATG	3 cut(s)	120, 132, 341
FaiI	YATR	4 cut(s)	118, 130, 260, 339
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	2 cut(s)	33, 68
FatI	CATG	3 cut(s)	116, 128, 337
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	6, 9, 342, 345, 348, 357
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	6 cut(s)	6, 9, 342, 345, 348, 357
GluI	GCNGC	6 cut(s)	6, 9, 342, 345, 348, 357
HaeIII	GGCC	3 cut(s)	5, 164, 333
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	120, 132, 341
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	103, 125, 286
Hpy188III	TCNNGA	2 cut(s)	67, 190
Hpy8I	GTNNAC	3 cut(s)	103, 125, 286
HpyAV	CCTTC	4 cut(s)	64, 187, 211, 266
HpyCH4V	TGCA	3 cut(s)	347, 359, 365
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 242, 347, 353, 356, 362
HpyF3I	CTNAG	5 cut(s)	45, 65, 225, 303, 372
Hsp92II	CATG	3 cut(s)	120, 132, 341
Lsp1109I	GCAGC	4 cut(s)	328, 331, 343, 359
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	26, 181, 226
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	164
MnlI	CCTC	5 cut(s)	10, 40, 172, 220, 235
Mox20I	TGGCCA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	164
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	3 cut(s)	152, 166, 176
MvaI	CCWGG	2 cut(s)	152, 166
MwoI	GCNNNNNNNGC	6 cut(s)	161, 242, 347, 353, 356, 362
NciI	CCSGG	1 cut(s)	176
NlaIII	CATG	3 cut(s)	120, 132, 341
NspI	RCATGY	1 cut(s)	341
PaeI	GCATGC	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	7, 10, 343, 346, 349, 358
Psp6I	CCWGG	2 cut(s)	150, 164
PspGI	CCWGG	2 cut(s)	150, 164
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	6 cut(s)	6, 9, 342, 345, 348, 357
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	152, 166, 176
SduI	GDGCHC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	125
SphI	GCATGC	1 cut(s)	341
SsiI	CCGC	2 cut(s)	6, 9
StyD4I	CCNGG	3 cut(s)	150, 164, 174
TaqI	TCGA	1 cut(s)	285
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	49, 115
TseI	GCWGC	4 cut(s)	341, 344, 347, 356
TspDTI	ATGAA	2 cut(s)	105, 127
TspRI	CASTG	2 cut(s)	49, 115
VpaK11BI	GGWCC	1 cut(s)	125
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.