Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Forward (+)

21117910 .. 21120201

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1251000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAACGGAGGAGGGACAAGTTTTCAGCTGCCACACTGTGGAGGCATGGGAGCAGCAGCTCCAAAAAGGCAACGACTCCAAGAAGCTGATGGTTATTGACTTCACTGCTTCTTGGTGCGGACCATGCCGCTTCATCGCACCATTCTTGGCAGAGTTGGCTAAGAAGCTGCCCGATGTCATATTCGTAAAGGTCGATGTCGATGAATTGAAGACGGTCGCGCAAGACTGGGCGGTAGAGGCAATGCCGACGTTCATGTTCCTGAAAGAAGGGAAGATCGTGGACAAGGTGGTCGGAGCGAAGAAGGACGAGCTGCAGCAGACGATTGCGAAGCATCTGGGCACTGCTTCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

5.35

Isoelectric Point (pI)

24.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	11 - 110	3.5e-31	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	120, 130, 233
AdeI	CACNNNGTG	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	5 cut(s)	30, 61, 88, 169, 313
AluI	AGCT	5 cut(s)	30, 61, 88, 169, 313
ApeKI	GCWGC	6 cut(s)	30, 55, 58, 169, 313, 316
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	6 cut(s)	17, 67, 70, 156, 300, 328
BccI	CCATC	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	7 cut(s)	31, 56, 59, 130, 170, 314, 317
BlsI	GCNGC	7 cut(s)	32, 57, 60, 131, 171, 315, 318
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	6 cut(s)	17, 67, 70, 156, 300, 328
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	3 cut(s)	120, 130, 233
BspFNI	CGCG	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	233
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	40, 217
BstDEI	CTNAG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 158, 239
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	6 cut(s)	17, 67, 70, 156, 300, 328
BstV2I	GAAGAC	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	121
BtsI	GCAGTG	2 cut(s)	105, 342
BtsIMutI	CAGTG	3 cut(s)	36, 105, 342
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	3 cut(s)	48, 126, 256
CviJI	RGCY	6 cut(s)	30, 61, 88, 161, 169, 313
CviKI_1	RGCY	6 cut(s)	30, 61, 88, 161, 169, 313
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	40
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	122
FaeI	CATG	3 cut(s)	51, 129, 259
FaiI	YATR	4 cut(s)	49, 127, 182, 257
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	47, 125, 255
Fnu4HI	GCNGC	7 cut(s)	31, 56, 59, 130, 170, 314, 317
Fsp4HI	GCNGC	7 cut(s)	31, 56, 59, 130, 170, 314, 317
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	7 cut(s)	31, 56, 59, 130, 170, 314, 317
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	3 cut(s)	51, 129, 259
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	263, 298
HpyCH4III	ACNGT	2 cut(s)	40, 217
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 158, 239
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	51, 129, 259
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	3 cut(s)	52, 66, 296
LpnPI	CCDG	3 cut(s)	214, 275, 323
Lsp1109I	GCAGC	6 cut(s)	17, 67, 70, 156, 300, 328
LweI	GCATC	1 cut(s)	343
MaeII	ACGT	1 cut(s)	251
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	3 cut(s)	223, 286, 313
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	4 cut(s)	4, 7, 37, 232
MspA1I	CMGCKG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	126, 158, 239
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	51, 129, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	7 cut(s)	32, 57, 60, 131, 171, 315, 318
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	122
PstI	CTGCAG	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	30
SatI	GCNGC	7 cut(s)	31, 56, 59, 130, 170, 314, 317
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	8 cut(s)	32, 63, 90, 171, 195, 254, 291, 315
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	3 cut(s)	120, 130, 233
TaaI	ACNGT	2 cut(s)	40, 217
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	195, 201
TasI	AATT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	132
TscAI	CASTG	3 cut(s)	43, 112, 349
TseI	GCWGC	6 cut(s)	30, 55, 58, 169, 313, 316
TspDTI	ATGAA	3 cut(s)	124, 219, 244
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	43, 112, 349
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.