Rroxscaffold_2G00142490

Belongs to the thioredoxin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
80560720 .. 80562500
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142490.1

Sequence Viewer

Length: 357 bp
ATGGCAGCAGAGGAAGGACAAGTCGTCAGTGTCCACACTGTGGATGCATGGAACGAGCAGCTTCAGAAGGGAAACGACACCAAGAAACTGATGGTTGTTGATTTCACTGCTTCATGGTGTGGACCATGCCGCTTCATTGCACCATTCTTGTCAGAGCTGGCCAAGAAGCTTCCAAATGTCATCTTCGTAAAGATTGATGTGGATGAGTTGAAGTCGGTTGCCCAAGATTGGGCTGTAGAGGCAATGCCGACCTTCATGTTTCTGAAAGAAGGGAAGATTGTGGACAAAGTGGTGGGAGCAAAGAAAGAGGAACTGCAGCAGACTGTAGCAAAGCACGTAGCTACTGCTTCTGCCTGA

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

5.66

Isoelectric Point (pI)

18.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 9 - 110 4.8e-31 Thioredoxin
Thioredoxin_2 PF13098 27 - 106 9.9e-06 Thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AciI CCGC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 40
AfiI CCNNNNNNNGG 3 cut(s) 40, 228, 229
AgsI TTSAA 1 cut(s) 211
AhdI GACNNNNNGTC 1 cut(s) 23
AluBI AGCT 4 cut(s) 61, 157, 169, 341
AluI AGCT 4 cut(s) 61, 157, 169, 341
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 5, 58, 316
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 161
BbvI GCAGC 3 cut(s) 17, 70, 328
BccI CCATC 1 cut(s) 85
BfmI CTRYAG 3 cut(s) 234, 314, 324
BisI GCNGC 4 cut(s) 6, 59, 130, 317
BlsI GCNGC 4 cut(s) 7, 60, 131, 318
Bme18I GGWCC 1 cut(s) 122
BmeRI GACNNNNNGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 122
BmsI GCATC 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 337
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 228, 229
Bse3DI GCAATG 2 cut(s) 135, 249
BseGI GGATG 2 cut(s) 49, 208
BseLI CCNNNNNNNGG 3 cut(s) 40, 228, 229
BseMI GCAATG 2 cut(s) 135, 249
BseXI GCAGC 3 cut(s) 17, 70, 328
BshFI GGCC 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 40, 228, 229
BsnI GGCC 1 cut(s) 161
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 135, 249
Bst4CI ACNGT 2 cut(s) 40, 325
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 159
BstF5I GGATG 2 cut(s) 49, 208
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSFI CTRYAG 3 cut(s) 234, 314, 324
BstV1I GCAGC 3 cut(s) 17, 70, 328
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 49, 208
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 34, 36, 105
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 4 cut(s) 48, 114, 126, 256
CviJI RGCY 6 cut(s) 61, 157, 161, 169, 233, 341
CviKI_1 RGCY 6 cut(s) 61, 157, 161, 169, 233, 341
DraIII CACNNNGTG 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 4 cut(s) 51, 117, 129, 259
FaiI YATR 4 cut(s) 49, 115, 127, 257
FatI CATG 4 cut(s) 47, 113, 125, 255
Fnu4HI GCNGC 4 cut(s) 6, 59, 130, 317
FokI GGATG 2 cut(s) 56, 215
Fsp4HI GCNGC 4 cut(s) 6, 59, 130, 317
GluI GCNGC 4 cut(s) 6, 59, 130, 317
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 4 cut(s) 51, 117, 129, 259
HindIII AAGCTT 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 34, 122, 283
Hpy188I TCNGA 3 cut(s) 66, 154, 264
Hpy8I GTNNAC 3 cut(s) 34, 122, 283
HpyAV CCTTC 4 cut(s) 8, 61, 262, 263
HpyCH4III ACNGT 2 cut(s) 40, 325
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 47, 140, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 51, 117, 129, 259
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 1 cut(s) 143
Lsp1109I GCAGC 3 cut(s) 17, 70, 328
LweI GCATC 1 cut(s) 34
MaeII ACGT 1 cut(s) 336
MboII GAAGA 2 cut(s) 175, 286
MlsI TGGCCA 1 cut(s) 161
MluNI TGGCCA 1 cut(s) 161
MnlI CCTC 3 cut(s) 4, 232, 301
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 49
MscI TGGCCA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 4 cut(s) 51, 117, 129, 259
NsiI ATGCAT 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 4 cut(s) 7, 60, 131, 318
Ppu21I YACGTR 1 cut(s) 337
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 318
SatI GCNGC 4 cut(s) 6, 59, 130, 317
Sau96I GGNCC 1 cut(s) 122
SetI ASST 6 cut(s) 63, 159, 171, 254, 339, 343
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 3 cut(s) 234, 314, 324
SinI GGWCC 1 cut(s) 122
SsiI CCGC 1 cut(s) 130
TaaI ACNGT 2 cut(s) 40, 325
TaiI ACGT 1 cut(s) 339
TauI GCSGC 1 cut(s) 132
TscAI CASTG 3 cut(s) 34, 43, 112
TseI GCWGC 3 cut(s) 5, 58, 316
TspDTI ATGAA 3 cut(s) 102, 124, 244
TspRI CASTG 3 cut(s) 34, 43, 112
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.