Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Forward (+)

18973126 .. 18974892

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGAGTGTTGAATTGACGTTGAAGAACAGTAACATGAAAGACAAAACCCTAACCGGCGGCGCTCAAAATGGCGATGATTTCTCCGTCGACGACTTGCTTGACTTCTCAAAAGAAGAAGAAGACGACGACGTTTTGGTTGAGGATGAGGCTGAATTGAAAGTACAACGAAAAAGAGGAGTCTCTGACGAAAATACCCTTCACCGGAGCAACGATTTCTCCACCGCTGATTTCCACACTAGCGGGCTTTCCGTTCCGATGGATGATATAGCGGAACTTGAATGGTTATCAAATTTCGTAGATGATTCTTCTTTCACGCCGTATTCTGCTCCGACGAATAAACCGGTTTGGTTAACCGGAAATCGGAGACATCTTGTACAACCGGTTAAAGAGGAGACCTGCTTCAAATCCCAACATCCGGCCGTCAAAACCAGACCCAAACGAGCCAGAACCGGAGTCAGAGTCTGGTCTCATGGTTCGCAGTCGTTAACCGACTCATCTTCAAGCTCTACAACATCTTCGTCGTCCTCTCCTCGTCCTTCAAGCCCTCTATGGCTCGCCAGCGGTCAGTTTCTTGATGAGCCAATGACTAAAACACAAAAGAAGAAGAAAGTTTGGAAAAACGCTGGTCAGACGCAAACGCAAACGCAGACGCAGACGCGGCAGTGTGGTCATTGTGGAGTTCAGAAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCGAAGACGTTGTGTAATGCGTGTGGTGTGCGTTACAAATCGGGTCGGTTACTACCCGAATATAGACCCGCTTGTAGCCCAACATTTTCGAGTGAGCTTCACTCAAACCACCACAGTAAAGTCATTGAGATGCGTAGGAAGAAAGAGACTTCTGACGGTGCTGAAGAAACCGGTTTGAACCAGCCGGTTCAGACGGTTCAGGTTGTCTCGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

312

Amino Acids

34.68

Weight (kDa)

7.11

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	223 - 257	4.4e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	661
AciI	CCGC	8 cut(s)	60, 225, 243, 272, 564, 661, 695, 789
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	903
AfaI	GTAC	2 cut(s)	165, 378
AfiI	CCNNNNNNNGG	3 cut(s)	204, 363, 418
AgeI	ACCGGT	3 cut(s)	343, 382, 890
AgsI	TTSAA	8 cut(s)	14, 25, 160, 281, 406, 504, 543, 898
AluBI	AGCT	2 cut(s)	507, 817
AluI	AGCT	2 cut(s)	507, 817
Alw26I	GTCTC	6 cut(s)	187, 361, 389, 474, 860, 931
AlwNI	CAGNNNCTG	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	292
AsiGI	ACCGGT	3 cut(s)	343, 382, 890
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	928
AvaII	GGWCC	1 cut(s)	710
BbsI	GAAGAC	2 cut(s)	129, 731
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	304, 407
BcoDI	GTCTC	6 cut(s)	187, 361, 389, 474, 860, 931
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	61, 662, 695
BlsI	GCNGC	3 cut(s)	62, 663, 696
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	928
BmgT120I	GGNCC	1 cut(s)	710
BmsI	GCATC	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	129, 731
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BsaI	GGTCTC	2 cut(s)	389, 474
BsaWI	WCCGGW	6 cut(s)	204, 343, 356, 382, 452, 890
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 447, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 363, 418
Bse118I	RCCGGY	5 cut(s)	56, 343, 382, 890, 904
BseGI	GGATG	3 cut(s)	151, 268, 415
BseLI	CCNNNNNNNGG	3 cut(s)	204, 363, 418
BseRI	GAGGAG	3 cut(s)	192, 407, 522
BseX3I	CGGCCG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	661
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	422
BshTI	ACCGGT	3 cut(s)	343, 382, 890
BsiEI	CGRYCG	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	9 cut(s)	57, 205, 344, 357, 383, 419, 453, 891, 905
BslI	CCNNNNNNNGG	3 cut(s)	204, 363, 418
BsmAI	GTCTC	6 cut(s)	187, 361, 389, 474, 860, 931
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	2 cut(s)	389, 474
BsoBI	CYCGRG	1 cut(s)	928
Bsp1407I	TGTACA	1 cut(s)	376
BspACI	CCGC	8 cut(s)	60, 225, 243, 272, 564, 661, 695, 789
BspANI	GGCC	1 cut(s)	422
BspFNI	CGCG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	407
BspTNI	GGTCTC	2 cut(s)	389, 474
BsrFI	RCCGGY	5 cut(s)	56, 343, 382, 890, 904
BsrGI	TGTACA	1 cut(s)	376
BssAI	RCCGGY	5 cut(s)	56, 343, 382, 890, 904
Bst4CI	ACNGT	4 cut(s)	32, 836, 878, 916
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	245, 558, 562
BstF5I	GGATG	3 cut(s)	151, 268, 415
BstFNI	CGCG	1 cut(s)	661
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstMAI	GTCTC	6 cut(s)	187, 361, 389, 474, 860, 931
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstUI	CGCG	1 cut(s)	661
BstV2I	GAAGAC	2 cut(s)	129, 731
BstZI	CGGCCG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	422
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	151, 268, 415
BtsI	GCAGTG	2 cut(s)	671, 704
BtsIMutI	CAGTG	2 cut(s)	671, 704
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	3 cut(s)	245, 558, 562
CaiI	CAGNNNCTG	1 cut(s)	465
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	5 cut(s)	56, 343, 382, 890, 904
Cfr13I	GGNCC	1 cut(s)	710
CseI	GACGC	3 cut(s)	643, 661, 667
Csp6I	GTAC	2 cut(s)	164, 377
CspAI	ACCGGT	3 cut(s)	343, 382, 890
CviAII	CATG	2 cut(s)	37, 473
CviQI	GTAC	2 cut(s)	164, 377
EaeI	YGGCCR	1 cut(s)	420
EagI	CGGCCG	1 cut(s)	420
EclXI	CGGCCG	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	389, 474
Eco47I	GGWCC	1 cut(s)	710
Eco52I	CGGCCG	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	903
Eco88I	CYCGRG	1 cut(s)	928
FaeI	CATG	2 cut(s)	40, 476
FaiI	YATR	5 cut(s)	38, 269, 474, 553, 783
FatI	CATG	2 cut(s)	36, 472
FauI	CCCGC	2 cut(s)	236, 796
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	61, 662, 695
FokI	GGATG	3 cut(s)	158, 275, 402
Fsp4HI	GCNGC	3 cut(s)	61, 662, 695
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	61, 662, 695
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	9 cut(s)	57, 205, 344, 357, 383, 419, 453, 891, 905
HgaI	GACGC	3 cut(s)	643, 661, 667
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	40, 476
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	3 cut(s)	91, 354, 489
HindII	GTYRAC	3 cut(s)	91, 354, 489
HinfI	GANTC	5 cut(s)	180, 305, 456, 462, 494
HpaI	GTTAAC	2 cut(s)	354, 489
HpaII	CCGG	9 cut(s)	57, 205, 344, 357, 383, 419, 453, 891, 905
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	91, 354, 489
Hpy188I	TCNGA	9 cut(s)	187, 258, 333, 366, 461, 633, 687, 874, 912
Hpy188III	TCNNGA	2 cut(s)	575, 928
Hpy8I	GTNNAC	3 cut(s)	91, 354, 489
Hpy99I	CGWCG	6 cut(s)	92, 95, 131, 134, 337, 526
HpyAV	CCTTC	2 cut(s)	209, 549
HpyCH4III	ACNGT	4 cut(s)	32, 836, 878, 916
HpyCH4IV	ACGT	3 cut(s)	20, 132, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpySE526I	ACGT	3 cut(s)	20, 132, 728
Hsp92II	CATG	2 cut(s)	40, 476
HspAI	GCGC	1 cut(s)	63
KspAI	GTTAAC	2 cut(s)	354, 489
LmnI	GCTCC	3 cut(s)	207, 334, 719
LweI	GCATC	1 cut(s)	840
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	3 cut(s)	20, 132, 728
MaeIII	GTNAC	3 cut(s)	32, 752, 768
MluCI	AATT	3 cut(s)	14, 155, 292
MlyI	GAGTC	4 cut(s)	189, 465, 471, 488
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	7 cut(s)	136, 142, 170, 385, 538, 543, 558
MseI	TTAA	3 cut(s)	353, 387, 488
MslI	CAYNNNNRTG	1 cut(s)	848
MspA1I	CMGCKG	2 cut(s)	227, 564
MspI	CCGG	9 cut(s)	57, 205, 344, 357, 383, 419, 453, 891, 905
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	40, 476
PaeR7I	CTCGAG	1 cut(s)	928
PfeI	GAWTC	1 cut(s)	305
PinAI	ACCGGT	3 cut(s)	343, 382, 890
PkrI	GCNGC	3 cut(s)	62, 663, 696
PleI	GAGTC	4 cut(s)	188, 464, 470, 488
PpsI	GAGTC	4 cut(s)	188, 464, 470, 488
PspPI	GGNCC	1 cut(s)	710
PstNI	CAGNNNCTG	1 cut(s)	465
RsaI	GTAC	2 cut(s)	165, 378
RsaNI	GTAC	2 cut(s)	164, 377
RseI	CAYNNNNRTG	1 cut(s)	848
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	353, 387, 488
SatI	GCNGC	3 cut(s)	61, 662, 695
Sau96I	GGNCC	1 cut(s)	710
SchI	GAGTC	4 cut(s)	189, 465, 471, 488
SetI	ASST	7 cut(s)	23, 135, 401, 509, 731, 819, 924
SfaNI	GCATC	1 cut(s)	840
Sfr274I	CTCGAG	1 cut(s)	928
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	710
SlaI	CTCGAG	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	848
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
Sse9I	AATT	3 cut(s)	14, 155, 292
SsiI	CCGC	8 cut(s)	60, 225, 243, 272, 564, 661, 695, 789
SspMI	CTAG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	32, 836, 878, 916
TaiI	ACGT	3 cut(s)	23, 135, 731
TaqI	TCGA	3 cut(s)	90, 809, 929
TasI	AATT	3 cut(s)	14, 155, 292
TatI	WGTACW	2 cut(s)	163, 376
TauI	GCSGC	3 cut(s)	63, 664, 697
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	3 cut(s)	353, 387, 488
Tru9I	TTAA	3 cut(s)	353, 387, 488
TscAI	CASTG	2 cut(s)	671, 704
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	2 cut(s)	76, 241
TspRI	CASTG	2 cut(s)	671, 704
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.