Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Reverse (-)

12093532 .. 12095218

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCTTTACCAAACTCACCACCCCTCCTTTTTATTCCAATTTCATCCCCATTCTTCAACATATTCTTCTCCTTCCTCTGTAACCAGCACCACCACTTCTCTCTCTCCTCCTCCACCTCTACCACCCTGTCCTCCTCAGGTTGAAAGAAGTGAAATGGAATGCGTTGAAGCGGCGTTGAAGACCAGTATCAGGACGGAGATGGCCGTCAAGGAGGCCGTTTTCGACGACTTGTGGGGGTTGAACGCCCAGAACGGCGGCGTGCAGAATTTCGAGGACTTTTCCGTCGACGACCTTCTCGACTTTTCCAACGACGATGGGTTTGTGGAACAACAGGCTGAGGAGGAAGAGGAGGAGGACGACAAAGGCTCTGTTTTGCCCAAGAAAGAGAGCATGGAGGAAAAGGAAAATTCAACCCCGTCTTCGTGCTTGTCGGAGAAGAATGAACTTGGGCCGGAGCCGACCGAGCCCACCAGTGAACTCAGCGTTCCGGCAGACGACTTGGAAAACCTCGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGGGTTCAACACCTCTCTCCCCGCCGGGTTTCTGGCCGTGAAGCCCAAAAACCCGACCGAGAAGAGACCAGAACCGGAGGCTCTCAAGCCCTGTTTCAAGACTCCGGTTCCGGCCAAGGCCAGAAGCAAGAGGACCCGAACCGGCGGCCGGGTGTGGTCACTAGGGTCACCAACCTTCACCGAGTCTTCCTCAAGTTCAAGTTCGTCTTCCTCAACTTCTTCTTGTCCCTCCAGCCCATGGCTCATTTACAACACCACCCAAGGCCCCGGAGCCTTCGGTTCGTCAGTAGAGAAGCCTCAGAAGAAGCCAAAAAGACCAGCAACAGAAGGCGGCTCGAGCCAGCCGCCTCGGCGGTGCAGCCACTGCGGCGTCCAGAAGACTCCGCAGTGGAGAACCGGGCCCAATGGAGCCAAGACTCTGTGTAACGCCTGCGGAGTCCGTTACAAGTCGGGTCGGCTCGTGCCCGAATACCGCCCCGCTTGTAGCCCGACTTTCTCGAGCGAGTTGCACTCCAACCACCACCGCAAGGTGATGGAGATACGCCGCAAGAAGGAAGTCCCGCCAGGCCCCGAACCCGGTCTGATGACGACAGCAGCAGCGGCTCCGGTTGTTCGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

389

Amino Acids

42.46

Weight (kDa)

5.71

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	301 - 335	1.9e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	783
AccI	GTMKAC	1 cut(s)	285
AcoI	YGGCCR	4 cut(s)	201, 579, 657, 691
AcsI	RAATTY	2 cut(s)	265, 406
AcyI	GRCGYC	1 cut(s)	915
AfiI	CCNNNNNNNGG	7 cut(s)	189, 546, 693, 783, 1072, 1096, 1121
AgsI	TTSAA	9 cut(s)	57, 143, 167, 178, 241, 411, 553, 643, 744
AjnI	CCWGG	1 cut(s)	1108
Alw26I	GTCTC	2 cut(s)	525, 604
AlwNI	CAGNNNCTG	1 cut(s)	909
Ama87I	CYCGRG	4 cut(s)	509, 544, 880, 1042
ApaI	GGGCCC	1 cut(s)	948
ApeKI	GCWGC	3 cut(s)	903, 1139, 1142
ApoI	RAATTY	2 cut(s)	265, 406
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspS9I	GGNCC	6 cut(s)	449, 678, 809, 944, 945, 1112
AsuC2I	CCSGG	5 cut(s)	571, 695, 813, 943, 1122
AsuHPI	GGTGA	4 cut(s)	8, 705, 715, 1087
AvaI	CYCGRG	4 cut(s)	509, 544, 880, 1042
AvaII	GGWCC	1 cut(s)	678
AxyI	CCTNAGG	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	948, 1011
BanII	GRGCYC	2 cut(s)	468, 948
BauI	CACGAG	1 cut(s)	1004
BbsI	GAAGAC	5 cut(s)	185, 411, 723, 744, 929
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	3 cut(s)	915, 1151, 1154
BccI	CCATC	3 cut(s)	193, 308, 1072
BceAI	ACGGC	4 cut(s)	188, 200, 268, 566
BcgI	CGANNNNNNTGC	2 cut(s)	1033, 1067
BciT130I	CCWGG	1 cut(s)	1110
BcnI	CCSGG	5 cut(s)	571, 695, 813, 943, 1122
BcoDI	GTCTC	2 cut(s)	525, 604
BfaI	CTAG	1 cut(s)	707
BglI	GCCNNNNNGGC	2 cut(s)	895, 912
Bme1390I	CCNGG	6 cut(s)	571, 695, 813, 943, 1110, 1122
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	4 cut(s)	509, 544, 880, 1042
BmgT120I	GGNCC	6 cut(s)	449, 678, 809, 944, 945, 1112
BmiI	GGNNCC	9 cut(s)	456, 654, 680, 811, 817, 946, 955, 1114, 1149
BmrFI	CCNGG	6 cut(s)	571, 695, 813, 943, 1110, 1122
BpiI	GAAGAC	5 cut(s)	185, 411, 723, 744, 929
BplI	GAGNNNNNCTC	4 cut(s)	719, 751, 1040, 1072
BpmI	CTGGAG	1 cut(s)	760
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	614, 721
BpuMI	CCSGG	5 cut(s)	571, 695, 813, 943, 1122
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	5 cut(s)	660, 782, 805, 811, 893
BsaWI	WCCGGW	3 cut(s)	619, 649, 1150
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	7 cut(s)	189, 546, 693, 783, 1072, 1096, 1121
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	2 cut(s)	183, 471
Bse21I	CCTNAGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	1110
BseDI	CCNNGG	5 cut(s)	660, 782, 805, 811, 893
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	7 cut(s)	189, 546, 693, 783, 1072, 1096, 1121
BseMII	CTCAG	4 cut(s)	149, 327, 493, 857
BseNI	ACTGG	2 cut(s)	183, 471
BseRI	GAGGAG	6 cut(s)	96, 99, 123, 353, 362, 365
BseSI	GKGCMC	2 cut(s)	948, 1011
BseX3I	CGGCCG	1 cut(s)	691
BseXI	GCAGC	3 cut(s)	915, 1151, 1154
BsgI	GTGCAG	2 cut(s)	281, 922
Bsh1285I	CGRYCG	3 cut(s)	462, 603, 694
BsiEI	CGRYCG	3 cut(s)	462, 603, 694
BsiHKCI	CYCGRG	4 cut(s)	509, 544, 880, 1042
BslFI	GGGAC	2 cut(s)	756, 1088
BslI	CCNNNNNNNGG	7 cut(s)	189, 546, 693, 783, 1072, 1096, 1121
BsmAI	GTCTC	2 cut(s)	525, 604
BsmFI	GGGAC	2 cut(s)	756, 1088
BsmI	GAATGC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	4 cut(s)	509, 544, 880, 1042
Bsp120I	GGGCCC	1 cut(s)	944
Bsp1286I	GDGCHC	3 cut(s)	468, 948, 1011
Bsp19I	CCATGG	1 cut(s)	782
BspCNI	CTCAG	4 cut(s)	148, 328, 492, 856
BspLI	GGNNCC	9 cut(s)	456, 654, 680, 811, 817, 946, 955, 1114, 1149
BspTNI	GGTCTC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	183, 471
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	5 cut(s)	660, 782, 805, 811, 893
BssNI	GRCGYC	1 cut(s)	915
BssSI	CACGAG	1 cut(s)	1004
BssT1I	CCWWGG	3 cut(s)	660, 782, 805
Bst2BI	CACGAG	1 cut(s)	1004
Bst2UI	CCWGG	1 cut(s)	1110
Bst6I	CTCTTC	2 cut(s)	339, 602
BstACI	GRCGYC	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	909
BstC8I	GCNNGC	3 cut(s)	260, 887, 976
BstDEI	CTNAG	4 cut(s)	135, 336, 479, 843
BstDSI	CCRYGG	1 cut(s)	782
BstEII	GGTNACC	1 cut(s)	711
BstF5I	GGATG	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	525, 604
BstMCI	CGRYCG	3 cut(s)	462, 603, 694
BstMWI	GCNNNNNNNGC	6 cut(s)	463, 882, 895, 909, 912, 1145
BstNI	CCWGG	1 cut(s)	1110
BstPI	GGTNACC	1 cut(s)	711
BstSCI	CCNGG	6 cut(s)	569, 693, 811, 941, 1108, 1120
BstSLI	GKGCMC	2 cut(s)	948, 1011
BstV1I	GCAGC	3 cut(s)	915, 1151, 1154
BstV2I	GAAGAC	5 cut(s)	185, 411, 723, 744, 929
BstZI	CGGCCG	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	2 cut(s)	907, 938
BtsIMutI	CAGTG	3 cut(s)	478, 907, 938
Cac8I	GCNNGC	3 cut(s)	260, 887, 976
CaiI	CAGNNNCTG	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	6 cut(s)	449, 678, 809, 944, 945, 1112
CseI	GACGC	1 cut(s)	904
CviAII	CATG	2 cut(s)	391, 783
DdeI	CTNAG	4 cut(s)	135, 336, 479, 843
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	4 cut(s)	201, 579, 657, 691
EagI	CGGCCG	1 cut(s)	691
Eam1104I	CTCTTC	2 cut(s)	339, 602
EarI	CTCTTC	2 cut(s)	339, 602
EclXI	CGGCCG	1 cut(s)	691
Eco130I	CCWWGG	3 cut(s)	660, 782, 805
Eco24I	GRGCYC	2 cut(s)	468, 948
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	678
Eco52I	CGGCCG	1 cut(s)	691
Eco81I	CCTNAGG	1 cut(s)	135
Eco88I	CYCGRG	4 cut(s)	509, 544, 880, 1042
Eco91I	GGTNACC	1 cut(s)	711
EcoO109I	RGGNCCY	3 cut(s)	678, 809, 1112
EcoO65I	GGTNACC	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	1108
EcoT14I	CCWWGG	3 cut(s)	660, 782, 805
EcoT38I	GRGCYC	2 cut(s)	468, 948
ErhI	CCWWGG	3 cut(s)	660, 782, 805
FaeI	CATG	2 cut(s)	394, 786
FaiI	YATR	3 cut(s)	61, 392, 784
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	2 cut(s)	756, 1088
FatI	CATG	2 cut(s)	390, 782
FauI	CCCGC	3 cut(s)	574, 1030, 1113
FblI	GTMKAC	1 cut(s)	285
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	2 cut(s)	468, 948
FspBI	CTAG	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	760
HgaI	GACGC	1 cut(s)	904
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	2 cut(s)	394, 786
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	6 cut(s)	536, 646, 728, 925, 961, 981
HphI	GGTGA	4 cut(s)	8, 705, 715, 1087
Hpy166II	GTNNAC	2 cut(s)	286, 476
Hpy188I	TCNGA	3 cut(s)	433, 846, 1128
Hpy188III	TCNNGA	5 cut(s)	190, 296, 643, 919, 1042
Hpy8I	GTNNAC	2 cut(s)	286, 476
Hpy99I	CGWCG	4 cut(s)	227, 287, 290, 314
HpyAV	CCTTC	7 cut(s)	81, 302, 550, 730, 829, 866, 1090
HpyCH4V	TGCA	3 cut(s)	262, 903, 1054
HpyF10VI	GCNNNNNNNGC	6 cut(s)	463, 882, 895, 909, 912, 1145
HpyF3I	CTNAG	4 cut(s)	135, 336, 479, 843
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	2 cut(s)	394, 786
LmnI	GCTCC	4 cut(s)	454, 815, 953, 1153
Lsp1109I	GCAGC	3 cut(s)	915, 1151, 1154
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	5 cut(s)	79, 702, 711, 968, 986
MhlI	GDGCHC	3 cut(s)	468, 948, 1011
MluCI	AATT	3 cut(s)	38, 265, 406
MlyI	GAGTC	5 cut(s)	640, 737, 919, 955, 990
MmeI	TCCRAC	3 cut(s)	330, 411, 1083
MspA1I	CMGCKG	1 cut(s)	1145
MspR9I	CCNGG	6 cut(s)	571, 695, 813, 943, 1110, 1122
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	6 cut(s)	463, 882, 895, 909, 912, 1145
NciI	CCSGG	5 cut(s)	571, 695, 813, 943, 1122
NcoI	CCATGG	1 cut(s)	782
NlaIII	CATG	2 cut(s)	394, 786
NlaIV	GGNNCC	9 cut(s)	456, 654, 680, 811, 817, 946, 955, 1114, 1149
NmeAIII	GCCGAG	1 cut(s)	874
NmuCI	GTSAC	2 cut(s)	702, 711
PaeR7I	CTCGAG	3 cut(s)	509, 880, 1042
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	783
PleI	GAGTC	5 cut(s)	640, 736, 919, 955, 989
PpsI	GAGTC	5 cut(s)	640, 736, 919, 955, 989
PpuMI	RGGWCCY	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	1108
PspEI	GGTNACC	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	1108
PspN4I	GGNNCC	9 cut(s)	456, 654, 680, 811, 817, 946, 955, 1114, 1149
PspOMI	GGGCCC	1 cut(s)	944
PspPI	GGNCC	6 cut(s)	449, 678, 809, 944, 945, 1112
PspPPI	RGGWCCY	1 cut(s)	678
PspXI	VCTCGAGB	2 cut(s)	509, 880
PstNI	CAGNNNCTG	1 cut(s)	909
SalI	GTCGAC	1 cut(s)	284
Sau96I	GGNCC	6 cut(s)	449, 678, 809, 944, 945, 1112
SchI	GAGTC	5 cut(s)	640, 737, 919, 955, 990
ScrFI	CCNGG	6 cut(s)	571, 695, 813, 943, 1110, 1122
SduI	GDGCHC	3 cut(s)	468, 948, 1011
SetI	ASST	7 cut(s)	118, 141, 294, 510, 560, 722, 1077
Sfr274I	CTCGAG	3 cut(s)	509, 880, 1042
SgrDI	CGTCGACG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	678
SlaI	CTCGAG	3 cut(s)	509, 880, 1042
SmlI	CTYRAG	5 cut(s)	509, 629, 736, 880, 1042
SmoI	CTYRAG	5 cut(s)	509, 629, 736, 880, 1042
Sse9I	AATT	3 cut(s)	38, 265, 406
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	6 cut(s)	569, 693, 811, 941, 1108, 1120
StyI	CCWWGG	3 cut(s)	660, 782, 805
TaqI	TCGA	7 cut(s)	222, 270, 285, 297, 510, 881, 1043
TaqII	GACCGA	2 cut(s)	476, 617
TasI	AATT	3 cut(s)	38, 265, 406
TauI	GCSGC	8 cut(s)	173, 258, 693, 879, 892, 915, 1092, 1148
TfiI	GAWTC	1 cut(s)	536
TscAI	CASTG	3 cut(s)	478, 914, 938
TseFI	GTSAC	2 cut(s)	702, 711
TseI	GCWGC	3 cut(s)	903, 1139, 1142
Tsp45I	GTSAC	2 cut(s)	702, 711
TspDTI	ATGAA	2 cut(s)	32, 456
TspGWI	ACGGA	3 cut(s)	209, 271, 974
TspRI	CASTG	3 cut(s)	478, 914, 938
Van91I	CCANNNNNTGG	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	2 cut(s)	265, 406
XhoI	CTCGAG	3 cut(s)	509, 880, 1042
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.