Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Forward (+)

80737163 .. 80738773

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCTTTACCAAACTCACCACCCCTCCTCCTTTTTATTCCAATTTCATCCCCATTCTGCAACCCATTCTTCTCCTTCCTCTGTCACCAGCACCACCACTTCTCTCTCTCCTCCACCTCCACCTCCACCTCTACCACCCTGTCCTCCTCAGGTTGAAAGAAGTGAAATGGAATGCGTTGAAGCGGCGTTGAAGACCAGTATCAGGACGGAGATGGCCGTCAAGGAGACCGTTTTCGACGACTTGTGGGTGTTGAACGCCCAGAACGGCGGCGTGCAGAATTGCGAGGACTTTTCCGTCGACGACCTTCTCGACTTCTCCAACGACGATGGGTTTGTGGAACAACAGGCTGAGGAGGAAGAGGAGGAAGACGACAAAGGCTCTGTTTTGCCCAAGAAAGAGAGCATGGAGGAAAAGGAAAATTCAACCCCGTCCTCGTGCTTGTCGGAGAAGAATGAACTTGGGCCGGAGCCGACCGAGCCCACCAGTGAACTCAGCGTTCCGGCAGACGACTTGGAAAACCTCGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGGGTTCAACACCTCTCTCCCCGCCGGGTTTCTGGCGGTGAAGCCCAAAACCCCGACGGAGAAGAGGCCAGAACCGGAATCTCTCAAGCCCTGTTTCAAGACTCCGGTTCCGGCCAAGGCCAGAAGCAAGAGAACCCGAACCGGCGGCCGGGTGTGGTCACTAGGGTCACCAACCTTCACCGAGTCTTCCTCAAGTTCAAGTTCGTCTTCCTCAACTTCTTCATGTCCCTCCAGCCCATGGCTCATTTACAACACCACCCAAGGCCCCGGAGCCTTCGGTTCGTCAGTAGAGAAGCCTCAGAAGAAGTCAAAAAGACCAGCAACAGAAGGCGGTTCGAGCCAGCCGCCTCGGCGGTGCAGCCACTGCGGCGTACAGAAGACTCCGCAGTGGAGAACCGGGCCCAATGGAGCCAAGACTCTGTGTAACGCCTGCGGAGTCCGTTACAAGTCGGGTCGGCTCGTGCCCGAATACCGCCCCGCTTGTAGCCCGACTTTCTCGAGCGAGTTGCACTCCAACCACCACCGCAAGGTGATGGAGATACGCCGCAAGAAGGAAGTCCCGCCAGGCCCCGAATCCGGTCTGATGACGACAGCAGCAGTGGCTCCGGCTCCGGTTGTTCGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

395

Amino Acids

43.01

Weight (kDa)

5.78

Isoelectric Point (pI)

71.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	305 - 339	2e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	297
AcoI	YGGCCR	3 cut(s)	213, 669, 703
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	1 cut(s)	930
AfiI	CCNNNNNNNGG	7 cut(s)	201, 558, 705, 795, 1084, 1108, 1133
AgsI	TTSAA	8 cut(s)	155, 179, 190, 253, 423, 565, 655, 756
AjnI	CCWGG	1 cut(s)	1120
Alw26I	GTCTC	2 cut(s)	218, 537
AlwNI	CAGNNNCTG	1 cut(s)	921
Ama87I	CYCGRG	3 cut(s)	521, 556, 1054
AoxI	GGCC	9 cut(s)	213, 461, 623, 669, 675, 703, 820, 956, 1123
ApaI	GGGCCC	1 cut(s)	960
ApeKI	GCWGC	2 cut(s)	915, 1151
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspS9I	GGNCC	5 cut(s)	461, 821, 956, 957, 1124
AsuC2I	CCSGG	4 cut(s)	583, 707, 825, 955
AsuHPI	GGTGA	6 cut(s)	8, 76, 607, 717, 727, 1099
AvaI	CYCGRG	3 cut(s)	521, 556, 1054
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	2 cut(s)	960, 1023
BanII	GRGCYC	2 cut(s)	480, 960
BauI	CACGAG	2 cut(s)	433, 1016
BbsI	GAAGAC	5 cut(s)	197, 372, 735, 756, 941
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	927, 1163
BccI	CCATC	3 cut(s)	205, 320, 1084
BceAI	ACGGC	2 cut(s)	200, 280
BcgI	CGANNNNNNTGC	2 cut(s)	1045, 1079
BciT130I	CCWGG	1 cut(s)	1122
BcnI	CCSGG	4 cut(s)	583, 707, 825, 955
BcoDI	GTCTC	2 cut(s)	218, 537
BfaI	CTAG	1 cut(s)	719
BglI	GCCNNNNNGGC	2 cut(s)	907, 924
BisI	GCNGC	8 cut(s)	183, 268, 703, 902, 916, 925, 1102, 1152
BlsI	GCNGC	8 cut(s)	184, 269, 704, 903, 917, 926, 1103, 1153
Bme1390I	CCNGG	5 cut(s)	583, 707, 825, 955, 1122
BmeT110I	CYCGRG	3 cut(s)	521, 556, 1054
BmgT120I	GGNCC	5 cut(s)	461, 821, 956, 957, 1124
BmiI	GGNNCC	9 cut(s)	468, 666, 823, 829, 958, 967, 1126, 1161, 1167
BmrFI	CCNGG	5 cut(s)	583, 707, 825, 955, 1122
BpiI	GAAGAC	5 cut(s)	197, 372, 735, 756, 941
BplI	GAGNNNNNCTC	4 cut(s)	731, 763, 1052, 1084
BpmI	CTGGAG	1 cut(s)	772
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	626, 733
BpuMI	CCSGG	4 cut(s)	583, 707, 825, 955
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	672, 794, 817, 823, 905
BsaWI	WCCGGW	4 cut(s)	631, 661, 1133, 1168
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 11, 38, 41
Bsc4I	CCNNNNNNNGG	7 cut(s)	201, 558, 705, 795, 1084, 1108, 1133
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	195, 483
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	1122
BseDI	CCNNGG	5 cut(s)	672, 794, 817, 823, 905
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	7 cut(s)	201, 558, 705, 795, 1084, 1108, 1133
BseMII	CTCAG	4 cut(s)	161, 339, 505, 869
BseNI	ACTGG	2 cut(s)	195, 483
BseRI	GAGGAG	5 cut(s)	16, 99, 135, 365, 374
BseSI	GKGCMC	2 cut(s)	960, 1023
BseX3I	CGGCCG	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	927, 1163
BsgI	GTGCAG	2 cut(s)	293, 934
Bsh1285I	CGRYCG	2 cut(s)	474, 706
BshFI	GGCC	9 cut(s)	215, 463, 625, 671, 677, 705, 822, 958, 1125
BsiEI	CGRYCG	2 cut(s)	474, 706
BsiHKCI	CYCGRG	3 cut(s)	521, 556, 1054
BslFI	GGGAC	2 cut(s)	768, 1100
BslI	CCNNNNNNNGG	7 cut(s)	201, 558, 705, 795, 1084, 1108, 1133
BsmAI	GTCTC	2 cut(s)	218, 537
BsmFI	GGGAC	2 cut(s)	768, 1100
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	9 cut(s)	215, 463, 625, 671, 677, 705, 822, 958, 1125
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	3 cut(s)	521, 556, 1054
Bsp120I	GGGCCC	1 cut(s)	956
Bsp1286I	GDGCHC	3 cut(s)	480, 960, 1023
Bsp19I	CCATGG	1 cut(s)	794
BspANI	GGCC	9 cut(s)	215, 463, 625, 671, 677, 705, 822, 958, 1125
BspCNI	CTCAG	4 cut(s)	160, 340, 504, 868
BspLI	GGNNCC	9 cut(s)	468, 666, 823, 829, 958, 967, 1126, 1161, 1167
BspTNI	GGTCTC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	195, 483
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	5 cut(s)	672, 794, 817, 823, 905
BssSI	CACGAG	2 cut(s)	433, 1016
BssT1I	CCWWGG	3 cut(s)	672, 794, 817
Bst2BI	CACGAG	2 cut(s)	433, 1016
Bst2UI	CCWGG	1 cut(s)	1122
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	351, 614
BstAPI	GCANNNNNTGC	1 cut(s)	921
BstC8I	GCNNGC	3 cut(s)	272, 899, 988
BstDEI	CTNAG	4 cut(s)	147, 348, 491, 855
BstDSI	CCRYGG	1 cut(s)	794
BstEII	GGTNACC	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	218, 537
BstMCI	CGRYCG	2 cut(s)	474, 706
BstMWI	GCNNNNNNNGC	6 cut(s)	475, 894, 907, 921, 924, 1157
BstNI	CCWGG	1 cut(s)	1122
BstPI	GGTNACC	1 cut(s)	723
BstSCI	CCNGG	5 cut(s)	581, 705, 823, 953, 1120
BstSLI	GKGCMC	2 cut(s)	960, 1023
BstV1I	GCAGC	2 cut(s)	927, 1163
BstV2I	GAAGAC	5 cut(s)	197, 372, 735, 756, 941
BstZI	CGGCCG	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	9 cut(s)	215, 463, 625, 671, 677, 705, 822, 958, 1125
BtgI	CCRYGG	1 cut(s)	794
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	3 cut(s)	919, 950, 1161
BtsIMutI	CAGTG	4 cut(s)	490, 919, 950, 1161
Cac8I	GCNNGC	3 cut(s)	272, 899, 988
CaiI	CAGNNNCTG	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	5 cut(s)	461, 821, 956, 957, 1124
Csp6I	GTAC	1 cut(s)	929
CviAII	CATG	3 cut(s)	403, 780, 795
CviQI	GTAC	1 cut(s)	929
DdeI	CTNAG	4 cut(s)	147, 348, 491, 855
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	3 cut(s)	213, 669, 703
EagI	CGGCCG	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	351, 614
EarI	CTCTTC	2 cut(s)	351, 614
EclXI	CGGCCG	1 cut(s)	703
Eco130I	CCWWGG	3 cut(s)	672, 794, 817
Eco24I	GRGCYC	2 cut(s)	480, 960
Eco31I	GGTCTC	1 cut(s)	218
Eco52I	CGGCCG	1 cut(s)	703
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	3 cut(s)	521, 556, 1054
Eco91I	GGTNACC	1 cut(s)	723
EcoO109I	RGGNCCY	2 cut(s)	821, 1124
EcoO65I	GGTNACC	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	1120
EcoT14I	CCWWGG	3 cut(s)	672, 794, 817
EcoT38I	GRGCYC	2 cut(s)	480, 960
ErhI	CCWWGG	3 cut(s)	672, 794, 817
FaeI	CATG	3 cut(s)	406, 783, 798
FaiI	YATR	3 cut(s)	404, 781, 796
FalI	AAGNNNNNCTT	2 cut(s)	748, 780
FaqI	GGGAC	2 cut(s)	768, 1100
FatI	CATG	3 cut(s)	402, 779, 794
FauI	CCCGC	3 cut(s)	586, 1042, 1125
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	8 cut(s)	183, 268, 703, 902, 916, 925, 1102, 1152
FokI	GGATG	1 cut(s)	33
FriOI	GRGCYC	2 cut(s)	480, 960
Fsp4HI	GCNGC	8 cut(s)	183, 268, 703, 902, 916, 925, 1102, 1152
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	8 cut(s)	183, 268, 703, 902, 916, 925, 1102, 1152
GsuI	CTGGAG	1 cut(s)	772
HaeIII	GGCC	9 cut(s)	215, 463, 625, 671, 677, 705, 822, 958, 1125
Hin1II	CATG	3 cut(s)	406, 783, 798
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	8 cut(s)	548, 635, 658, 740, 937, 973, 993, 1130
HphI	GGTGA	6 cut(s)	8, 76, 607, 717, 727, 1099
Hpy166II	GTNNAC	2 cut(s)	298, 488
Hpy188I	TCNGA	3 cut(s)	445, 858, 1140
Hpy188III	TCNNGA	4 cut(s)	202, 308, 655, 1054
Hpy8I	GTNNAC	2 cut(s)	298, 488
Hpy99I	CGWCG	5 cut(s)	239, 299, 302, 326, 616
HpyAV	CCTTC	7 cut(s)	84, 314, 562, 742, 841, 878, 1102
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	59, 274, 915, 1066
HpyF10VI	GCNNNNNNNGC	6 cut(s)	475, 894, 907, 921, 924, 1157
HpyF3I	CTNAG	4 cut(s)	147, 348, 491, 855
Hsp92II	CATG	3 cut(s)	406, 783, 798
LmnI	GCTCC	5 cut(s)	466, 827, 965, 1165, 1171
Lsp1109I	GCAGC	2 cut(s)	927, 1163
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	5 cut(s)	82, 714, 723, 980, 998
MhlI	GDGCHC	3 cut(s)	480, 960, 1023
MluCI	AATT	3 cut(s)	41, 277, 418
MlyI	GAGTC	5 cut(s)	652, 749, 931, 967, 1002
MmeI	TCCRAC	3 cut(s)	342, 423, 1095
MspR9I	CCNGG	5 cut(s)	583, 707, 825, 955, 1122
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	1122
MwoI	GCNNNNNNNGC	6 cut(s)	475, 894, 907, 921, 924, 1157
NciI	CCSGG	4 cut(s)	583, 707, 825, 955
NcoI	CCATGG	1 cut(s)	794
NlaIII	CATG	3 cut(s)	406, 783, 798
NlaIV	GGNNCC	9 cut(s)	468, 666, 823, 829, 958, 967, 1126, 1161, 1167
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	3 cut(s)	82, 714, 723
PaeR7I	CTCGAG	2 cut(s)	521, 1054
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	548, 635, 1130
PflMI	CCANNNNNTGG	1 cut(s)	795
PkrI	GCNGC	8 cut(s)	184, 269, 704, 903, 917, 926, 1103, 1153
PleI	GAGTC	5 cut(s)	652, 748, 931, 967, 1001
PpsI	GAGTC	5 cut(s)	652, 748, 931, 967, 1001
Psp6I	CCWGG	1 cut(s)	1120
PspEI	GGTNACC	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	1120
PspN4I	GGNNCC	9 cut(s)	468, 666, 823, 829, 958, 967, 1126, 1161, 1167
PspOMI	GGGCCC	1 cut(s)	956
PspPI	GGNCC	5 cut(s)	461, 821, 956, 957, 1124
PspXI	VCTCGAGB	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	921
RsaI	GTAC	1 cut(s)	930
RsaNI	GTAC	1 cut(s)	929
SalI	GTCGAC	1 cut(s)	296
SatI	GCNGC	8 cut(s)	183, 268, 703, 902, 916, 925, 1102, 1152
Sau96I	GGNCC	5 cut(s)	461, 821, 956, 957, 1124
SchI	GAGTC	5 cut(s)	652, 749, 931, 967, 1002
ScrFI	CCNGG	5 cut(s)	583, 707, 825, 955, 1122
SduI	GDGCHC	3 cut(s)	480, 960, 1023
SetI	ASST	9 cut(s)	118, 124, 130, 153, 306, 522, 572, 734, 1089
Sfr274I	CTCGAG	2 cut(s)	521, 1054
SgrDI	CGTCGACG	1 cut(s)	296
SlaI	CTCGAG	2 cut(s)	521, 1054
SmlI	CTYRAG	4 cut(s)	521, 641, 748, 1054
SmoI	CTYRAG	4 cut(s)	521, 641, 748, 1054
Sse9I	AATT	3 cut(s)	41, 277, 418
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	5 cut(s)	581, 705, 823, 953, 1120
StyI	CCWWGG	3 cut(s)	672, 794, 817
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	6 cut(s)	234, 297, 309, 522, 893, 1055
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	3 cut(s)	41, 277, 418
TauI	GCSGC	6 cut(s)	185, 270, 705, 904, 927, 1104
TfiI	GAWTC	3 cut(s)	548, 635, 1130
TscAI	CASTG	4 cut(s)	490, 926, 950, 1161
TseFI	GTSAC	3 cut(s)	82, 714, 723
TseI	GCWGC	2 cut(s)	915, 1151
Tsp45I	GTSAC	3 cut(s)	82, 714, 723
TspDTI	ATGAA	3 cut(s)	35, 468, 768
TspGWI	ACGGA	4 cut(s)	221, 283, 629, 986
TspRI	CASTG	4 cut(s)	490, 926, 950, 1161
Van91I	CCANNNNNTGG	1 cut(s)	795
XapI	RAATTY	1 cut(s)	418
XhoI	CTCGAG	2 cut(s)	521, 1054
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.