Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Reverse (-)

12271906 .. 12275098

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAATGCGTTGAAGCGGCGTTGAAAACCAGTATCAGGACCGAGATGGCCGTCAAGGAGGCTATTTCCGACGACTTGTGGGGGTTGAACGCCCAGAACGGCGGCGTGCAGAATTTCGAGGACTTTTCCGTCGACGACCTTCTCGACTTTTCCAACGACGATGGGTTTGTGGAACAACAGGCTGAGGAGGAAGAGGAGGAGGACGACAAAGGCTCTGTTTTGCCCAAGAAAGAGAGCATGGAGGAAAAGGAAAATTCAACCCCGTCTTCGTGCTTGTCGGAGAAGAATGAACTTGGGTCGGAGCCGACCGAGCCCACCAGTGAACTCAGCGTTCCGGCAGACGACTTGGAAAACCTCGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGGGTTCAACACCTCTCTCCCCGCCGGGTTTCTGGCCGTGAAGCCCAAAAACCCGACCGAGAAGAGGCCAGAACCGGAGGCTCTCAAGCCCTGTTTCAAGACTCCGGTTCCGGCCAAGGCCAGAAGCAAGAGGACCCGAACCGGCGGCCGGGTGTGGTCACTAGGGTCACCAACCTTCACCGAGTCTTCCTCAAGTTCAAGTTCGTCTTCCTCAACTTCTTCTTGTCCCTCCAGCCCATGGCTCATTTACAACACCACCCAAGGCCCCGGAGCCTTCGGTTCGTCAGTAGAGAAGCCTCAGAAGAAGCCAAAAAGACCGGCAACAGAAGGCGGCTCGAGCCAGCCGCCTCGGCGGTGCAGCCACTGCGGCGTCCAGAAGACTCCGCAGTGGAGAACCGGGCCCAATGGAGCCAAGACTCTGTGTAACGCCTGCGGAGTCCGTTACAAGTCGGGTCGGCTCGTGCCCGAATACCGCCCCGCTTGTAGCCCGACTTTCTCGAGCGAGTTGCACTCCAACCACCACCGCAAAGTGATGGAGATACGCCGCAAGAAGGAAGTCTCGCCAGGGCCCGAACCCGGTCCGATGACGACAGCAGCAGCGGCTCCGGTTGTTCGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

338

Amino Acids

36.75

Weight (kDa)

5.5

Isoelectric Point (pI)

66.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	250 - 284	1.6e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	132
AcoI	YGGCCR	4 cut(s)	48, 426, 504, 538
AcsI	RAATTY	2 cut(s)	112, 253
AcyI	GRCGYC	1 cut(s)	762
AfiI	CCNNNNNNNGG	7 cut(s)	36, 393, 456, 540, 630, 943, 968
AgsI	TTSAA	7 cut(s)	14, 25, 88, 258, 400, 490, 591
AjnI	CCWGG	1 cut(s)	955
Alw26I	GTCTC	2 cut(s)	372, 955
AlwNI	CAGNNNCTG	1 cut(s)	756
Ama87I	CYCGRG	4 cut(s)	356, 391, 727, 889
AoxI	GGCC	9 cut(s)	48, 426, 458, 504, 510, 538, 655, 791, 959
ApaI	GGGCCC	2 cut(s)	795, 963
ApeKI	GCWGC	3 cut(s)	750, 986, 989
ApoI	RAATTY	2 cut(s)	112, 253
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	8 cut(s)	39, 525, 656, 791, 792, 959, 960, 971
AsuC2I	CCSGG	5 cut(s)	418, 542, 660, 790, 969
AsuHPI	GGTGA	2 cut(s)	552, 562
AvaI	CYCGRG	4 cut(s)	356, 391, 727, 889
AvaII	GGWCC	3 cut(s)	39, 525, 971
BaeGI	GKGCMC	3 cut(s)	795, 858, 963
BanII	GRGCYC	3 cut(s)	315, 795, 963
BauI	CACGAG	1 cut(s)	851
BbsI	GAAGAC	4 cut(s)	258, 570, 591, 776
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	762, 998, 1001
BccI	CCATC	3 cut(s)	40, 155, 919
BceAI	ACGGC	3 cut(s)	35, 115, 413
BcgI	CGANNNNNNTGC	2 cut(s)	880, 914
BciT130I	CCWGG	1 cut(s)	957
BcnI	CCSGG	5 cut(s)	418, 542, 660, 790, 969
BcoDI	GTCTC	2 cut(s)	372, 955
BfaI	CTAG	1 cut(s)	554
BglI	GCCNNNNNGGC	2 cut(s)	742, 759
Bme1390I	CCNGG	6 cut(s)	418, 542, 660, 790, 957, 969
Bme18I	GGWCC	3 cut(s)	39, 525, 971
BmeT110I	CYCGRG	4 cut(s)	356, 391, 727, 889
BmgT120I	GGNCC	8 cut(s)	39, 525, 656, 791, 792, 959, 960, 971
BmiI	GGNNCC	9 cut(s)	303, 501, 527, 658, 664, 793, 802, 961, 996
BmrFI	CCNGG	6 cut(s)	418, 542, 660, 790, 957, 969
BpiI	GAAGAC	4 cut(s)	258, 570, 591, 776
BplI	GAGNNNNNCTC	4 cut(s)	566, 598, 887, 919
BpmI	CTGGAG	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	461, 568
BpuMI	CCSGG	5 cut(s)	418, 542, 660, 790, 969
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	6 cut(s)	507, 629, 652, 658, 740, 956
BsaWI	WCCGGW	3 cut(s)	466, 496, 997
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 393, 456, 540, 630, 943, 968
Bse118I	RCCGGY	2 cut(s)	533, 709
Bse1I	ACTGG	2 cut(s)	30, 318
BseBI	CCWGG	1 cut(s)	957
BseDI	CCNNGG	6 cut(s)	507, 629, 652, 658, 740, 956
BseLI	CCNNNNNNNGG	7 cut(s)	36, 393, 456, 540, 630, 943, 968
BseMII	CTCAG	3 cut(s)	174, 340, 704
BseNI	ACTGG	2 cut(s)	30, 318
BseRI	GAGGAG	3 cut(s)	200, 209, 212
BseSI	GKGCMC	3 cut(s)	795, 858, 963
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	3 cut(s)	762, 998, 1001
BsgI	GTGCAG	2 cut(s)	128, 769
Bsh1285I	CGRYCG	3 cut(s)	309, 450, 541
BshFI	GGCC	9 cut(s)	50, 428, 460, 506, 512, 540, 657, 793, 961
BsiEI	CGRYCG	3 cut(s)	309, 450, 541
BsiHKCI	CYCGRG	4 cut(s)	356, 391, 727, 889
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	7 cut(s)	36, 393, 456, 540, 630, 943, 968
BsmAI	GTCTC	2 cut(s)	372, 955
BsmFI	GGGAC	1 cut(s)	603
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	9 cut(s)	50, 428, 460, 506, 512, 540, 657, 793, 961
BsoBI	CYCGRG	4 cut(s)	356, 391, 727, 889
Bsp120I	GGGCCC	2 cut(s)	791, 959
Bsp1286I	GDGCHC	4 cut(s)	315, 795, 858, 963
Bsp19I	CCATGG	1 cut(s)	629
BspANI	GGCC	9 cut(s)	50, 428, 460, 506, 512, 540, 657, 793, 961
BspCNI	CTCAG	3 cut(s)	175, 339, 703
BspLI	GGNNCC	9 cut(s)	303, 501, 527, 658, 664, 793, 802, 961, 996
BsrFI	RCCGGY	2 cut(s)	533, 709
BsrI	ACTGG	2 cut(s)	30, 318
BssAI	RCCGGY	2 cut(s)	533, 709
BssECI	CCNNGG	6 cut(s)	507, 629, 652, 658, 740, 956
BssNI	GRCGYC	1 cut(s)	762
BssSI	CACGAG	1 cut(s)	851
BssT1I	CCWWGG	3 cut(s)	507, 629, 652
Bst2BI	CACGAG	1 cut(s)	851
Bst2UI	CCWGG	1 cut(s)	957
Bst6I	CTCTTC	2 cut(s)	186, 449
BstACI	GRCGYC	1 cut(s)	762
BstAPI	GCANNNNNTGC	1 cut(s)	756
BstC8I	GCNNGC	3 cut(s)	107, 734, 823
BstDEI	CTNAG	3 cut(s)	183, 326, 690
BstDSI	CCRYGG	1 cut(s)	629
BstEII	GGTNACC	1 cut(s)	558
BstMAI	GTCTC	2 cut(s)	372, 955
BstMCI	CGRYCG	3 cut(s)	309, 450, 541
BstMWI	GCNNNNNNNGC	6 cut(s)	310, 729, 742, 756, 759, 992
BstNI	CCWGG	1 cut(s)	957
BstPI	GGTNACC	1 cut(s)	558
BstSCI	CCNGG	6 cut(s)	416, 540, 658, 788, 955, 967
BstSLI	GKGCMC	3 cut(s)	795, 858, 963
BstV1I	GCAGC	3 cut(s)	762, 998, 1001
BstV2I	GAAGAC	4 cut(s)	258, 570, 591, 776
BstZI	CGGCCG	1 cut(s)	538
BsuRI	GGCC	9 cut(s)	50, 428, 460, 506, 512, 540, 657, 793, 961
BtgI	CCRYGG	1 cut(s)	629
BtsI	GCAGTG	2 cut(s)	754, 785
BtsIMutI	CAGTG	3 cut(s)	325, 754, 785
Cac8I	GCNNGC	3 cut(s)	107, 734, 823
CaiI	CAGNNNCTG	1 cut(s)	756
Cfr10I	RCCGGY	2 cut(s)	533, 709
Cfr13I	GGNCC	8 cut(s)	39, 525, 656, 791, 792, 959, 960, 971
CpoI	CGGWCCG	1 cut(s)	971
CseI	GACGC	1 cut(s)	751
CspI	CGGWCCG	1 cut(s)	971
CviAII	CATG	2 cut(s)	238, 630
DdeI	CTNAG	3 cut(s)	183, 326, 690
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	4 cut(s)	48, 426, 504, 538
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	186, 449
EarI	CTCTTC	2 cut(s)	186, 449
EclXI	CGGCCG	1 cut(s)	538
Eco130I	CCWWGG	3 cut(s)	507, 629, 652
Eco24I	GRGCYC	3 cut(s)	315, 795, 963
Eco47I	GGWCC	3 cut(s)	39, 525, 971
Eco52I	CGGCCG	1 cut(s)	538
Eco88I	CYCGRG	4 cut(s)	356, 391, 727, 889
Eco91I	GGTNACC	1 cut(s)	558
EcoO109I	RGGNCCY	3 cut(s)	525, 656, 959
EcoO65I	GGTNACC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	955
EcoT14I	CCWWGG	3 cut(s)	507, 629, 652
EcoT38I	GRGCYC	3 cut(s)	315, 795, 963
ErhI	CCWWGG	3 cut(s)	507, 629, 652
FaeI	CATG	2 cut(s)	241, 633
FaiI	YATR	2 cut(s)	239, 631
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	2 cut(s)	237, 629
FauI	CCCGC	2 cut(s)	421, 877
FblI	GTMKAC	1 cut(s)	132
FriOI	GRGCYC	3 cut(s)	315, 795, 963
FspBI	CTAG	1 cut(s)	554
GsuI	CTGGAG	1 cut(s)	607
HaeIII	GGCC	9 cut(s)	50, 428, 460, 506, 512, 540, 657, 793, 961
HgaI	GACGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	2 cut(s)	241, 633
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	383, 493, 575, 772, 808, 828
HphI	GGTGA	2 cut(s)	552, 562
Hpy166II	GTNNAC	2 cut(s)	133, 323
Hpy188I	TCNGA	5 cut(s)	70, 280, 301, 693, 975
Hpy188III	TCNNGA	5 cut(s)	37, 143, 490, 766, 889
Hpy8I	GTNNAC	2 cut(s)	133, 323
Hpy99I	CGWCG	4 cut(s)	74, 134, 137, 161
HpyAV	CCTTC	6 cut(s)	149, 397, 577, 676, 713, 937
HpyCH4V	TGCA	3 cut(s)	109, 750, 901
HpyF10VI	GCNNNNNNNGC	6 cut(s)	310, 729, 742, 756, 759, 992
HpyF3I	CTNAG	3 cut(s)	183, 326, 690
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	2 cut(s)	241, 633
LmnI	GCTCC	4 cut(s)	301, 662, 800, 1000
Lsp1109I	GCAGC	3 cut(s)	762, 998, 1001
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	4 cut(s)	549, 558, 815, 833
MboII	GAAGA	9 cut(s)	203, 258, 295, 466, 570, 591, 603, 706, 781
MhlI	GDGCHC	4 cut(s)	315, 795, 858, 963
MluCI	AATT	2 cut(s)	112, 253
MlyI	GAGTC	5 cut(s)	487, 584, 766, 802, 837
MmeI	TCCRAC	5 cut(s)	93, 177, 258, 279, 930
MspA1I	CMGCKG	1 cut(s)	992
MspR9I	CCNGG	6 cut(s)	418, 542, 660, 790, 957, 969
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	957
MwoI	GCNNNNNNNGC	6 cut(s)	310, 729, 742, 756, 759, 992
NciI	CCSGG	5 cut(s)	418, 542, 660, 790, 969
NcoI	CCATGG	1 cut(s)	629
NlaIII	CATG	2 cut(s)	241, 633
NlaIV	GGNNCC	9 cut(s)	303, 501, 527, 658, 664, 793, 802, 961, 996
NmeAIII	GCCGAG	1 cut(s)	721
NmuCI	GTSAC	2 cut(s)	549, 558
PaeR7I	CTCGAG	3 cut(s)	356, 727, 889
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	630
PleI	GAGTC	5 cut(s)	487, 583, 766, 802, 836
PpsI	GAGTC	5 cut(s)	487, 583, 766, 802, 836
PpuMI	RGGWCCY	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	955
PspEI	GGTNACC	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	9 cut(s)	303, 501, 527, 658, 664, 793, 802, 961, 996
PspOMI	GGGCCC	2 cut(s)	791, 959
PspPI	GGNCC	8 cut(s)	39, 525, 656, 791, 792, 959, 960, 971
PspPPI	RGGWCCY	1 cut(s)	525
PspXI	VCTCGAGB	2 cut(s)	356, 727
PstNI	CAGNNNCTG	1 cut(s)	756
Rsr2I	CGGWCCG	1 cut(s)	971
RsrII	CGGWCCG	1 cut(s)	971
SalI	GTCGAC	1 cut(s)	131
Sau96I	GGNCC	8 cut(s)	39, 525, 656, 791, 792, 959, 960, 971
SchI	GAGTC	5 cut(s)	487, 584, 766, 802, 837
ScrFI	CCNGG	6 cut(s)	418, 542, 660, 790, 957, 969
SduI	GDGCHC	4 cut(s)	315, 795, 858, 963
SetI	ASST	4 cut(s)	141, 357, 407, 569
Sfr274I	CTCGAG	3 cut(s)	356, 727, 889
SgrDI	CGTCGACG	1 cut(s)	131
SinI	GGWCC	3 cut(s)	39, 525, 971
SlaI	CTCGAG	3 cut(s)	356, 727, 889
SmlI	CTYRAG	5 cut(s)	356, 476, 583, 727, 889
SmoI	CTYRAG	5 cut(s)	356, 476, 583, 727, 889
Sse9I	AATT	2 cut(s)	112, 253
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	6 cut(s)	416, 540, 658, 788, 955, 967
StyI	CCWWGG	3 cut(s)	507, 629, 652
TaqI	TCGA	6 cut(s)	117, 132, 144, 357, 728, 890
TaqII	GACCGA	3 cut(s)	56, 323, 464
TasI	AATT	2 cut(s)	112, 253
TauI	GCSGC	8 cut(s)	20, 105, 540, 726, 739, 762, 939, 995
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	3 cut(s)	325, 761, 785
TseFI	GTSAC	2 cut(s)	549, 558
TseI	GCWGC	3 cut(s)	750, 986, 989
Tsp45I	GTSAC	2 cut(s)	549, 558
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	2 cut(s)	118, 821
TspRI	CASTG	3 cut(s)	325, 761, 785
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	39, 525, 971
XapI	RAATTY	2 cut(s)	112, 253
XhoI	CTCGAG	3 cut(s)	356, 727, 889
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.