pycom02g10750

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
7545139 .. 7546516
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10750.2

Sequence Viewer

Length: 1170 bp
ATGCTTTACCAAACTCACCCTCCCCTTTTTATTCCAATTTCATCCCTCTCCCCCTTTACATGTTCTATCCTTTCTTCAACCTCAACCTCTCCCCTCTCTTTCTCTCCTCTCACTCTCTCCTCCTCCTCTGCTCTCCTCCTCCCAGCTCTCCCTCTCCAACAGGTTGGAACTGAAATGGAATGCGTGGAAGCGGCTCTGAAGACGAGTATTAGGAAGGAGATGGCCGTGAAGGCGAACGGCCCGCAAGCGGTGGTTTTTGACGACTTGTTGTGGGGCGGCGCCGTCGTCAACGGCCAAAACGCTTGCGACGATTTCTCAGTCGACGACCTTCTCGACTTCTCGAACGAAAACGGGTTCTTTGAAACGGAGGGCGAGGAAGAAGACGATAAGGAAAAATTCAAGCCCTTTGTCTCTCTTTCTCCCCAGAAGCAGAACCAGGAGTCGGAAAAGTCCAATTTGTCGGAAAAAATTGAACCGGCGAGCGAACTCAGCGTTCCGGCGGACGACTTGGTGAACCTCGAATGGTTGTCTCATTTCGTCGAGGATTCCTTCTCGGAATTCGCGACGGCCCTTCCGGCCGGGTTCGTGCCAGAGAATCCCAAGTCCGAGAAGAGACCCGACCCGGAAACCGCTATCCCGGAAAAGCCTTGTTTCAAGACTCCGGTTCCGGCAAAGGCTAGAAGCAAGCGGACCAGGACCGGCGGCCGGGTCTGGTCACTCGGCTCGCCGTCGCTCACGGAGTCCTCGAGTTCGAGTTCGTCGTCGTCTTCCTCCTCTCCTTCGAACCCCTGGCTCATTTACCCCGCCACCCAGAACCAGGAACCGGGTGAACCGGTCTTGTCCGTGGAGAAGCCACCGAAGAAGCCGAAGAGACGACTGGTGGACGGAAGTTCGAGCCAGCCGCCGCGGCGGTGCAGCCATTGTGGGGTCCAAAAAACCCCTCAGTGGAGAACCGGCCCAAACGGAGCCAAGACCCTCTGTAACGCGTGCGGGGTCCGGTACAAGTCGGGCCGGCTCTTGCCGGAGTACCGTCCCGCATGCAGCCCGACGTTTTCCAGCGAGTTGCACTCCAACCACCACCGCAAAGTTCTAGAGATGCGGCGGAAGAAGGAAGGCCCGGGCACCCCCGAACCCGGTTTGACCAGACCTCCGGTGGTGCCCAGTTTTTGA

Protein Analysis

390

Amino Acids

42.4

Weight (kDa)

6.15

Isoelectric Point (pI)

67.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011801)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 278, 1121, 1156
AccI GTMKAC 1 cut(s) 321
AccII CGCG 3 cut(s) 563, 907, 986
AcoI YGGCCR 4 cut(s) 222, 292, 576, 703
AcsI RAATTY 2 cut(s) 395, 557
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 1001, 1028
AfiI CCNNNNNNNGG 8 cut(s) 247, 442, 705, 817, 823, 925, 945, 1133
AflIII ACRYGT 2 cut(s) 59, 984
AgeI ACCGGT 1 cut(s) 832
AgsI TTSAA 5 cut(s) 78, 362, 400, 473, 655
AjnI CCWGG 4 cut(s) 435, 692, 788, 816
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 4 cut(s) 415, 534, 607, 865
Ama87I CYCGRG 2 cut(s) 745, 1117
AoxI GGCC 9 cut(s) 222, 238, 292, 567, 576, 703, 955, 1009, 1114
ApeKI GCWGC 2 cut(s) 915, 1041
ApoI RAATTY 2 cut(s) 395, 557
AsiGI ACCGGT 1 cut(s) 832
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 9 cut(s) 239, 568, 690, 696, 928, 956, 994, 1009, 1115
AsuC2I CCSGG 8 cut(s) 580, 623, 638, 707, 825, 1118, 1119, 1134
AsuHPI GGTGA 3 cut(s) 8, 523, 839
AsuII TTCGAA 1 cut(s) 782
AvaI CYCGRG 2 cut(s) 745, 1117
AvaII GGWCC 4 cut(s) 690, 696, 928, 994
BaeGI GKGCMC 2 cut(s) 1124, 1161
BanI GGYRCC 3 cut(s) 278, 1121, 1156
BbsI GAAGAC 3 cut(s) 206, 387, 759
BbvI GCAGC 2 cut(s) 927, 1053
BccI CCATC 1 cut(s) 214
BceAI ACGGC 6 cut(s) 209, 253, 266, 307, 582, 712
BciT130I CCWGG 4 cut(s) 437, 694, 790, 818
BcnI CCSGG 8 cut(s) 580, 623, 638, 707, 825, 1118, 1119, 1134
BcoDI GTCTC 4 cut(s) 415, 534, 607, 865
BfaI CTAG 2 cut(s) 678, 1091
BfoI RGCGCY 1 cut(s) 282
BglI GCCNNNNNGGC 3 cut(s) 230, 575, 907
BisI GCNGC 9 cut(s) 192, 277, 703, 902, 905, 908, 916, 1042, 1100
BlsI GCNGC 9 cut(s) 193, 278, 704, 903, 906, 909, 917, 1043, 1101
Bme18I GGWCC 4 cut(s) 690, 696, 928, 994
BmeT110I CYCGRG 2 cut(s) 745, 1117
BmgT120I GGNCC 9 cut(s) 239, 568, 690, 696, 928, 956, 994, 1009, 1115
BmiI GGNNCC 8 cut(s) 280, 666, 822, 929, 967, 995, 1123, 1158
BmrI ACTGGG 1 cut(s) 1155
BmsI GCATC 1 cut(s) 1086
BmuI ACTGGG 1 cut(s) 1155
BpiI GAAGAC 3 cut(s) 206, 387, 759
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
Bpu14I TTCGAA 1 cut(s) 782
BpuMI CCSGG 8 cut(s) 580, 623, 638, 707, 825, 1118, 1119, 1134
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 788, 843, 905, 1117
BsaWI WCCGGW 4 cut(s) 661, 832, 996, 1150
BsaXI ACNNNNNCTCC 3 cut(s) 34, 1132, 1162
Bsc4I CCNNNNNNNGG 8 cut(s) 247, 442, 705, 817, 823, 925, 945, 1133
Bse118I RCCGGY 5 cut(s) 475, 698, 832, 953, 1011
Bse1I ACTGG 2 cut(s) 882, 1161
BseBI CCWGG 4 cut(s) 437, 694, 790, 818
BseDI CCNNGG 4 cut(s) 788, 843, 905, 1117
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 8 cut(s) 247, 442, 705, 817, 823, 925, 945, 1133
BseMII CTCAG 3 cut(s) 330, 502, 956
BseNI ACTGG 2 cut(s) 882, 1161
BseRI GAGGAG 7 cut(s) 96, 109, 112, 115, 125, 128, 763
BseSI GKGCMC 2 cut(s) 1124, 1161
BseX3I CGGCCG 2 cut(s) 576, 703
BseXI GCAGC 2 cut(s) 927, 1053
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 934
Bsh1236I CGCG 3 cut(s) 563, 907, 986
Bsh1285I CGRYCG 2 cut(s) 579, 706
BshFI GGCC 9 cut(s) 224, 240, 294, 569, 578, 705, 957, 1011, 1116
BshNI GGYRCC 3 cut(s) 278, 1121, 1156
BshTI ACCGGT 1 cut(s) 832
BsiEI CGRYCG 2 cut(s) 579, 706
BsiHKCI CYCGRG 2 cut(s) 745, 1117
BslFI GGGAC 1 cut(s) 1017
BslI CCNNNNNNNGG 8 cut(s) 247, 442, 705, 817, 823, 925, 945, 1133
BsmAI GTCTC 4 cut(s) 415, 534, 607, 865
BsmBI CGTCTC 1 cut(s) 865
BsmFI GGGAC 1 cut(s) 1017
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 9 cut(s) 224, 240, 294, 569, 578, 705, 957, 1011, 1116
Bso31I GGTCTC 1 cut(s) 607
BsoBI CYCGRG 2 cut(s) 745, 1117
Bsp119I TTCGAA 1 cut(s) 782
Bsp1286I GDGCHC 2 cut(s) 1124, 1161
Bsp68I TCGCGA 1 cut(s) 563
BspANI GGCC 9 cut(s) 224, 240, 294, 569, 578, 705, 957, 1011, 1116
BspCNI CTCAG 3 cut(s) 329, 501, 955
BspFNI CGCG 3 cut(s) 563, 907, 986
BspLI GGNNCC 8 cut(s) 280, 666, 822, 929, 967, 995, 1123, 1158
BspT104I TTCGAA 1 cut(s) 782
BspT107I GGYRCC 3 cut(s) 278, 1121, 1156
BspTNI GGTCTC 1 cut(s) 607
BsrFI RCCGGY 5 cut(s) 475, 698, 832, 953, 1011
BsrI ACTGG 2 cut(s) 882, 1161
BssAI RCCGGY 5 cut(s) 475, 698, 832, 953, 1011
BssECI CCNNGG 4 cut(s) 788, 843, 905, 1117
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 4 cut(s) 437, 694, 790, 818
Bst4CI ACNGT 1 cut(s) 1031
Bst6I CTCTTC 2 cut(s) 605, 863
BstACI GRCGYC 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 782
BstDEI CTNAG 3 cut(s) 316, 488, 942
BstDSI CCRYGG 2 cut(s) 843, 905
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 3 cut(s) 563, 907, 986
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstMAI GTCTC 4 cut(s) 415, 534, 607, 865
BstMCI CGRYCG 2 cut(s) 579, 706
BstMWI GCNNNNNNNGC 4 cut(s) 230, 489, 575, 907
BstNI CCWGG 4 cut(s) 437, 694, 790, 818
BstNSI RCATGY 2 cut(s) 63, 1041
BstSLI GKGCMC 2 cut(s) 1124, 1161
BstUI CGCG 3 cut(s) 563, 907, 986
BstV1I GCAGC 2 cut(s) 927, 1053
BstV2I GAAGAC 3 cut(s) 206, 387, 759
BstXI CCANNNNNNTGG 1 cut(s) 164
BstZI CGGCCG 2 cut(s) 576, 703
BsuRI GGCC 9 cut(s) 224, 240, 294, 569, 578, 705, 957, 1011, 1116
BtgI CCRYGG 2 cut(s) 843, 905
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 950
BtuMI TCGCGA 1 cut(s) 563
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 5 cut(s) 475, 698, 832, 953, 1011
Cfr13I GGNCC 9 cut(s) 239, 568, 690, 696, 928, 956, 994, 1009, 1115
Cfr42I CCGCGG 1 cut(s) 908
Cfr9I CCCGGG 1 cut(s) 1117
Csp6I GTAC 2 cut(s) 1000, 1027
CspAI ACCGGT 1 cut(s) 832
CviAII CATG 2 cut(s) 60, 1038
CviQI GTAC 2 cut(s) 1000, 1027
DdeI CTNAG 3 cut(s) 316, 488, 942
DinI GGCGCC 1 cut(s) 280
EaeI YGGCCR 4 cut(s) 222, 292, 576, 703
EagI CGGCCG 2 cut(s) 576, 703
Eam1104I CTCTTC 2 cut(s) 605, 863
EarI CTCTTC 2 cut(s) 605, 863
EciI GGCGGA 2 cut(s) 515, 1117
EclXI CGGCCG 2 cut(s) 576, 703
Eco31I GGTCTC 1 cut(s) 607
Eco47I GGWCC 4 cut(s) 690, 696, 928, 994
Eco52I CGGCCG 2 cut(s) 576, 703
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 2 cut(s) 745, 1117
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 4 cut(s) 435, 692, 788, 816
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 865
FaeI CATG 2 cut(s) 63, 1041
FaiI YATR 2 cut(s) 61, 1039
FaqI GGGAC 1 cut(s) 1017
FatI CATG 2 cut(s) 59, 1037
FauI CCCGC 4 cut(s) 249, 811, 983, 1042
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 9 cut(s) 192, 277, 703, 902, 905, 908, 916, 1042, 1100
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 9 cut(s) 192, 277, 703, 902, 905, 908, 916, 1042, 1100
FspBI CTAG 2 cut(s) 678, 1091
GlaI GCGC 1 cut(s) 280
GluI GCNGC 9 cut(s) 192, 277, 703, 902, 905, 908, 916, 1042, 1100
GsaI CCCAGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 9 cut(s) 224, 240, 294, 569, 578, 705, 957, 1011, 1116
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 63, 1041
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 2 cut(s) 289, 322
HindII GTYRAC 2 cut(s) 289, 322
HinfI GANTC 5 cut(s) 440, 545, 595, 658, 740
HphI GGTGA 3 cut(s) 8, 523, 839
Hpy166II GTNNAC 5 cut(s) 289, 322, 514, 830, 883
Hpy188I TCNGA 5 cut(s) 198, 445, 463, 556, 607
Hpy188III TCNNGA 5 cut(s) 332, 340, 562, 655, 1091
Hpy8I GTNNAC 5 cut(s) 289, 322, 514, 830, 883
Hpy99I CGWCG 9 cut(s) 287, 311, 326, 542, 568, 733, 763, 766, 1051
HpyAV CCTTC 8 cut(s) 208, 223, 338, 559, 581, 789, 1102, 1106
HpyCH4III ACNGT 1 cut(s) 1031
HpyCH4IV ACGT 1 cut(s) 1049
HpyCH4V TGCA 3 cut(s) 915, 1041, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 489, 575, 907
HpyF3I CTNAG 3 cut(s) 316, 488, 942
HpySE526I ACGT 1 cut(s) 1049
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 63, 1041
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 1011
KroNI GCCGGC 1 cut(s) 1013
KspI CCGCGG 1 cut(s) 908
LmnI GCTCC 1 cut(s) 965
Lsp1109I GCAGC 2 cut(s) 927, 1053
LweI GCATC 1 cut(s) 1086
MaeI CTAG 2 cut(s) 678, 1091
MaeII ACGT 1 cut(s) 1049
MaeIII GTNAC 2 cut(s) 714, 980
MboII GAAGA 9 cut(s) 66, 211, 389, 392, 622, 759, 871, 880, 1117
MhlI GDGCHC 2 cut(s) 1124, 1161
MluCI AATT 5 cut(s) 36, 395, 454, 468, 557
MluI ACGCGT 1 cut(s) 984
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 3 cut(s) 449, 652, 749
MmeI TCCRAC 5 cut(s) 145, 181, 423, 441, 1095
MroNI GCCGGC 1 cut(s) 1011
MspA1I CMGCKG 1 cut(s) 907
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 4 cut(s) 437, 694, 790, 818
MvnI CGCG 3 cut(s) 563, 907, 986
MwoI GCNNNNNNNGC 4 cut(s) 230, 489, 575, 907
NaeI GCCGGC 1 cut(s) 1013
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 8 cut(s) 580, 623, 638, 707, 825, 1118, 1119, 1134
NgoMIV GCCGGC 1 cut(s) 1011
NlaIII CATG 2 cut(s) 63, 1041
NlaIV GGNNCC 8 cut(s) 280, 666, 822, 929, 967, 995, 1123, 1158
NmeAIII GCCGAG 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 714
NruI TCGCGA 1 cut(s) 563
NspI RCATGY 2 cut(s) 63, 1041
NspV TTCGAA 1 cut(s) 782
PaeI GCATGC 1 cut(s) 1041
PaeR7I CTCGAG 1 cut(s) 745
PciI ACATGT 1 cut(s) 59
PcsI WCGNNNNNNNCGW 5 cut(s) 306, 330, 560, 743, 758
PctI GAATGC 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 1013
PfeI GAWTC 2 cut(s) 545, 595
PfoI TCCNGGA 1 cut(s) 636
PinAI ACCGGT 1 cut(s) 832
PkrI GCNGC 9 cut(s) 193, 278, 704, 903, 906, 909, 917, 1043, 1101
PleI GAGTC 3 cut(s) 448, 652, 748
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 3 cut(s) 448, 652, 748
PscI ACATGT 1 cut(s) 59
Psp6I CCWGG 4 cut(s) 435, 692, 788, 816
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 4 cut(s) 435, 692, 788, 816
PspN4I GGNNCC 8 cut(s) 280, 666, 822, 929, 967, 995, 1123, 1158
PspPI GGNCC 9 cut(s) 239, 568, 690, 696, 928, 956, 994, 1009, 1115
PspXI VCTCGAGB 1 cut(s) 745
RruI TCGCGA 1 cut(s) 563
RsaI GTAC 2 cut(s) 1001, 1028
RsaNI GTAC 2 cut(s) 1000, 1027
SacII CCGCGG 1 cut(s) 908
SalI GTCGAC 1 cut(s) 320
SatI GCNGC 9 cut(s) 192, 277, 703, 902, 905, 908, 916, 1042, 1100
Sau96I GGNCC 9 cut(s) 239, 568, 690, 696, 928, 956, 994, 1009, 1115
SchI GAGTC 3 cut(s) 449, 652, 749
SduI GDGCHC 2 cut(s) 1124, 1161
SetI ASST 8 cut(s) 83, 89, 148, 165, 330, 519, 1052, 1150
SfaNI GCATC 1 cut(s) 1086
SfiI GGCCNNNNNGGCC 1 cut(s) 575
SfoI GGCGCC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 745
Sfr303I CCGCGG 1 cut(s) 908
SfuI TTCGAA 1 cut(s) 782
SgrBI CCGCGG 1 cut(s) 908
SinI GGWCC 4 cut(s) 690, 696, 928, 994
SlaI CTCGAG 1 cut(s) 745
SmaI CCCGGG 1 cut(s) 1119
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
SphI GCATGC 1 cut(s) 1041
SrfI GCCCGGGC 1 cut(s) 1119
Sse9I AATT 5 cut(s) 36, 395, 454, 468, 557
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 2 cut(s) 678, 1091
TaaI ACNGT 1 cut(s) 1031
TaiI ACGT 1 cut(s) 1052
TaqI TCGA 9 cut(s) 321, 333, 341, 519, 540, 746, 752, 782, 893
TasI AATT 5 cut(s) 36, 395, 454, 468, 557
TauI GCSGC 7 cut(s) 194, 279, 705, 904, 907, 910, 1102
TfiI GAWTC 2 cut(s) 545, 595
TscAI CASTG 1 cut(s) 950
TseFI GTSAC 1 cut(s) 714
TseI GCWGC 2 cut(s) 915, 1041
Tsp45I GTSAC 1 cut(s) 714
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 5 cut(s) 380, 752, 832, 900, 978
TspMI CCCGGG 1 cut(s) 1117
TspRI CASTG 1 cut(s) 950
VpaK11BI GGWCC 4 cut(s) 690, 696, 928, 994
XapI RAATTY 2 cut(s) 395, 557
XbaI TCTAGA 1 cut(s) 1090
XceI RCATGY 2 cut(s) 63, 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 1150
XhoI CTCGAG 1 cut(s) 745
XmaI CCCGGG 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 2 cut(s) 678, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.