Prupe.7G164500_v2.0.a1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
16911807 .. 16913631
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G164500.1

Sequence Viewer

Length: 1206 bp
ATGCTTTACCAAACTCACCACTCCTTTTTATTCCAATTTCATCCCTTTACTTGTTCAATCCCTTCTTCTTCTTCAACCACCTCAACCTCAAACTCAACCTCAACCTCTCTCCTCTCCTCTCTCTCTCCTCATCCTCCTCTGCCCTTAACCTGTCCTCCACCGCTACCTCCACAACAGGTTGAAACTGAAATGGAATGCGTGGAAGCGGCCCTGAAGACCAGTATTAGGAAGGAGATGGCTGTCAAGGCGAGCTCACAAGCGGTTTTTGATGACTTGTTGTGGGGCGGCGTCAATGGACAAAACGGTGTCGCTTGTGACGATTTCTCAGTAGATGACCTCCTTGACTTCTCGAACGAAGATGGGTTTGTGGAAACAGAGGCTGAGGAAGACGATAAAGATAAAGTCAAGGGCTTTGCCTCTGTTCCGCCTCAGAAACAACCCCAGGACCCTGAGAACTCGGATTTGTCTGAAAAAAACGAACTTGGGCCGGAACCCACCAGCGAACTCAGCGTTCCGGCGGACGACTTGGAAAACCTCGAGTGGTTGTCTCATTTTGTTGAGGATTCTTTCACGGAATTCACTACGTCTCTGCCGGCAGGGTTCATCCCCGAGAAGCCCAAGACCGAGAAACGTCCCGACCCGGCAGCGCCTTTACCCGAAAAACCCTGTTTCAAGACTCCGGTTCCGGCCAAGGCCAGAAGCAAGCGAACACGAACCGGCGGCCGGGTCTGGTCACTGGGGTCACCTTCGTTGACGGAGACATCCTCGAGTTCTAGTTCCTCGTCTTCTTCTTCGTCTCCGTCTAGCCCCTGGCTCATTTACCCCACCACCCAGAACCGGGAACCGGCCGAAGCGGGCGGCGAACCGGTCGGGTCAGTGGAGAAGCCTCCGAAGAAGCCCAAGAGAAGACTGGTGGATGGAAGCTCGAGCCAGCCGCCTCGTCGGTGCAGCCATTGTGGGGTGCAGAAGACCCCGCAGTGGAGAACCGGGCCCAATGGAGCCAAGACCCTCTGTAACGCCTGTGGGGTCCGTTACAAGTCGGGTCGGCTCTTACCGGAATATCGACCCGCATGCAGCCCGACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGTAAAGTTCTAGAGATGCGGAAGAAGAAGGATGTCACCGGCGTGCCCGAACCCGGTTTGACCAGACCTCCGGTGGTGCCCAGTTTTGGTTAG

Protein Analysis

402

Amino Acids

43.57

Weight (kDa)

5.92

Isoelectric Point (pI)

64.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011801)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1189
AcoI YGGCCR 3 cut(s) 687, 721, 846
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 9 cut(s) 225, 723, 837, 838, 844, 958, 978, 1166, 1199
AgeI ACCGGT 1 cut(s) 865
AgsI TTSAA 4 cut(s) 57, 75, 182, 673
AjnI CCWGG 2 cut(s) 441, 809
AleI CACNNNNGTG 1 cut(s) 1154
AluBI AGCT 2 cut(s) 252, 924
AluI AGCT 2 cut(s) 252, 924
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 4 cut(s) 552, 591, 752, 801
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 5 cut(s) 536, 608, 766, 925, 1087
AoxI GGCC 7 cut(s) 207, 485, 687, 693, 721, 846, 989
ApaI GGGCCC 1 cut(s) 993
ApeKI GCWGC 3 cut(s) 644, 948, 1074
ApoI RAATTY 1 cut(s) 575
AsiGI ACCGGT 1 cut(s) 865
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 6 cut(s) 208, 445, 485, 989, 990, 1027
AsuC2I CCSGG 5 cut(s) 641, 725, 839, 988, 1167
AsuHPI GGTGA 3 cut(s) 8, 735, 1141
AvaI CYCGRG 5 cut(s) 536, 608, 766, 925, 1087
AvaII GGWCC 2 cut(s) 445, 1027
BaeGI GKGCMC 3 cut(s) 993, 1161, 1194
BanI GGYRCC 1 cut(s) 1189
BanII GRGCYC 2 cut(s) 254, 993
BbsI GAAGAC 5 cut(s) 221, 393, 777, 913, 974
Bbv12I GWGCWC 1 cut(s) 254
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 656, 960, 1086
BccI CCATC 3 cut(s) 229, 353, 911
BcgI CGANNNNNNTGC 4 cut(s) 1053, 1078, 1087, 1112
BciT130I CCWGG 2 cut(s) 443, 811
BcnI CCSGG 5 cut(s) 641, 725, 839, 988, 1167
BcoDI GTCTC 4 cut(s) 552, 591, 752, 801
BfaI CTAG 3 cut(s) 774, 804, 1124
BfoI RGCGCY 1 cut(s) 650
BisI GCNGC 8 cut(s) 207, 286, 645, 721, 859, 935, 949, 1075
BlsI GCNGC 8 cut(s) 208, 287, 646, 722, 860, 936, 950, 1076
Bme1390I CCNGG 7 cut(s) 443, 641, 725, 811, 839, 988, 1167
Bme18I GGWCC 2 cut(s) 445, 1027
BmeT110I CYCGRG 5 cut(s) 536, 608, 766, 925, 1087
BmgT120I GGNCC 6 cut(s) 208, 445, 485, 989, 990, 1027
BmiI GGNNCC 8 cut(s) 447, 492, 684, 843, 991, 1000, 1028, 1191
BmrFI CCNGG 7 cut(s) 443, 641, 725, 811, 839, 988, 1167
BmrI ACTGGG 2 cut(s) 746, 1188
BmsI GCATC 1 cut(s) 1119
BmuI ACTGGG 2 cut(s) 746, 1188
BpiI GAAGAC 5 cut(s) 221, 393, 777, 913, 974
BplI GAGNNNNNCTC 4 cut(s) 749, 781, 1085, 1117
Bpu10I CCTNAGC 1 cut(s) 381
BpuMI CCSGG 5 cut(s) 641, 725, 839, 988, 1167
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 441, 690, 809
BsaWI WCCGGW 4 cut(s) 679, 865, 1054, 1183
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 1165, 1195
Bsc4I CCNNNNNNNGG 9 cut(s) 225, 723, 837, 838, 844, 958, 978, 1166, 1199
Bse118I RCCGGY 5 cut(s) 592, 716, 844, 865, 1151
Bse1I ACTGG 4 cut(s) 219, 741, 915, 1194
BseBI CCWGG 2 cut(s) 443, 811
BseDI CCNNGG 3 cut(s) 441, 690, 809
BseGI GGATG 6 cut(s) 40, 130, 603, 761, 922, 1150
BseLI CCNNNNNNNGG 9 cut(s) 225, 723, 837, 838, 844, 958, 978, 1166, 1199
BseMII CTCAG 5 cut(s) 339, 372, 441, 443, 520
BseNI ACTGG 4 cut(s) 219, 741, 915, 1194
BseRI GAGGAG 4 cut(s) 101, 106, 117, 126
BseSI GKGCMC 3 cut(s) 993, 1161, 1194
BseX3I CGGCCG 2 cut(s) 721, 846
BseXI GCAGC 3 cut(s) 656, 960, 1086
BsgI GTGCAG 2 cut(s) 967, 983
Bsh1285I CGRYCG 3 cut(s) 724, 849, 870
BshFI GGCC 7 cut(s) 209, 487, 689, 695, 723, 848, 991
BshNI GGYRCC 1 cut(s) 1189
BshTI ACCGGT 1 cut(s) 865
BsiEI CGRYCG 3 cut(s) 724, 849, 870
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 5 cut(s) 536, 608, 766, 925, 1087
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 9 cut(s) 225, 723, 837, 838, 844, 958, 978, 1166, 1199
BsmAI GTCTC 4 cut(s) 552, 591, 752, 801
BsmBI CGTCTC 2 cut(s) 591, 801
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 7 cut(s) 209, 487, 689, 695, 723, 848, 991
BsoBI CYCGRG 5 cut(s) 536, 608, 766, 925, 1087
Bsp120I GGGCCC 1 cut(s) 989
Bsp1286I GDGCHC 4 cut(s) 254, 993, 1161, 1194
BspANI GGCC 7 cut(s) 209, 487, 689, 695, 723, 848, 991
BspCNI CTCAG 5 cut(s) 338, 373, 442, 442, 519
BspLI GGNNCC 8 cut(s) 447, 492, 684, 843, 991, 1000, 1028, 1191
BspT107I GGYRCC 1 cut(s) 1189
BsrFI RCCGGY 5 cut(s) 592, 716, 844, 865, 1151
BsrI ACTGG 4 cut(s) 219, 741, 915, 1194
BssAI RCCGGY 5 cut(s) 592, 716, 844, 865, 1151
BssECI CCNNGG 3 cut(s) 441, 690, 809
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 443, 811
Bst4CI ACNGT 2 cut(s) 305, 1115
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 7 cut(s) 250, 594, 704, 856, 932, 1072, 1157
BstDEI CTNAG 5 cut(s) 325, 381, 429, 450, 506
BstEII GGTNACC 1 cut(s) 741
BstF5I GGATG 6 cut(s) 40, 130, 603, 761, 922, 1150
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 1 cut(s) 649
BstMAI GTCTC 4 cut(s) 552, 591, 752, 801
BstMCI CGRYCG 3 cut(s) 724, 849, 870
BstMWI GCNNNNNNNGC 2 cut(s) 245, 507
BstNI CCWGG 2 cut(s) 443, 811
BstNSI RCATGY 1 cut(s) 1074
BstPI GGTNACC 1 cut(s) 741
BstSCI CCNGG 7 cut(s) 441, 639, 723, 809, 837, 986, 1165
BstSLI GKGCMC 3 cut(s) 993, 1161, 1194
BstV1I GCAGC 3 cut(s) 656, 960, 1086
BstV2I GAAGAC 5 cut(s) 221, 393, 777, 913, 974
BstZI CGGCCG 2 cut(s) 721, 846
BsuRI GGCC 7 cut(s) 209, 487, 689, 695, 723, 848, 991
BtsCI GGATG 6 cut(s) 40, 130, 603, 761, 922, 1150
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 3 cut(s) 734, 882, 983
Cac8I GCNNGC 7 cut(s) 250, 594, 704, 856, 932, 1072, 1157
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 649
Cfr10I RCCGGY 5 cut(s) 592, 716, 844, 865, 1151
Cfr13I GGNCC 6 cut(s) 208, 445, 485, 989, 990, 1027
CseI GACGC 1 cut(s) 277
CspAI ACCGGT 1 cut(s) 865
CviAII CATG 1 cut(s) 1071
DdeI CTNAG 5 cut(s) 325, 381, 429, 450, 506
EaeI YGGCCR 3 cut(s) 687, 721, 846
EagI CGGCCG 2 cut(s) 721, 846
EciI GGCGGA 2 cut(s) 414, 533
Ecl136II GAGCTC 1 cut(s) 252
EclXI CGGCCG 2 cut(s) 721, 846
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 254, 993
Eco47I GGWCC 2 cut(s) 445, 1027
Eco52I CGGCCG 2 cut(s) 721, 846
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 233
Eco88I CYCGRG 5 cut(s) 536, 608, 766, 925, 1087
Eco91I GGTNACC 1 cut(s) 741
EcoICRI GAGCTC 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 441, 809
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 2 cut(s) 254, 993
ErhI CCWWGG 1 cut(s) 690
Esp3I CGTCTC 2 cut(s) 591, 801
FaeI CATG 1 cut(s) 1074
FaiI YATR 1 cut(s) 1072
FaqI GGGAC 1 cut(s) 618
FatI CATG 1 cut(s) 1070
FauI CCCGC 3 cut(s) 847, 981, 1075
Fnu4HI GCNGC 8 cut(s) 207, 286, 645, 721, 859, 935, 949, 1075
FokI GGATG 6 cut(s) 27, 117, 590, 748, 929, 1157
FriOI GRGCYC 2 cut(s) 254, 993
Fsp4HI GCNGC 8 cut(s) 207, 286, 645, 721, 859, 935, 949, 1075
FspBI CTAG 3 cut(s) 774, 804, 1124
GlaI GCGC 1 cut(s) 648
GluI GCNGC 8 cut(s) 207, 286, 645, 721, 859, 935, 949, 1075
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 7 cut(s) 209, 487, 689, 695, 723, 848, 991
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 649
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 1074
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 2 cut(s) 563, 676
HphI GGTGA 3 cut(s) 8, 735, 1141
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 4 cut(s) 432, 460, 469, 891
Hpy188III TCNNGA 5 cut(s) 349, 635, 673, 1087, 1124
Hpy8I GTNNAC 1 cut(s) 753
Hpy99I CGWCG 1 cut(s) 945
HpyAV CCTTC 4 cut(s) 72, 223, 756, 1135
HpyCH4III ACNGT 2 cut(s) 305, 1115
HpyCH4IV ACGT 2 cut(s) 584, 631
HpyCH4V TGCA 4 cut(s) 948, 964, 1074, 1099
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 507
HpyF3I CTNAG 5 cut(s) 325, 381, 429, 450, 506
HpySE526I ACGT 2 cut(s) 584, 631
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 1074
HspAI GCGC 1 cut(s) 647
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
LmnI GCTCC 1 cut(s) 998
Lsp1109I GCAGC 3 cut(s) 656, 960, 1086
LweI GCATC 1 cut(s) 1119
MaeI CTAG 3 cut(s) 774, 804, 1124
MaeII ACGT 2 cut(s) 584, 631
MaeIII GTNAC 6 cut(s) 314, 732, 741, 1013, 1031, 1147
MhlI GDGCHC 4 cut(s) 254, 993, 1161, 1194
MluCI AATT 2 cut(s) 35, 575
MlyI GAGTC 1 cut(s) 670
MroNI GCCGGC 1 cut(s) 592
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 1154
MspR9I CCNGG 7 cut(s) 443, 641, 725, 811, 839, 988, 1167
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 2 cut(s) 443, 811
MwoI GCNNNNNNNGC 2 cut(s) 245, 507
NaeI GCCGGC 1 cut(s) 594
NciI CCSGG 5 cut(s) 641, 725, 839, 988, 1167
NgoMIV GCCGGC 1 cut(s) 592
NlaIII CATG 1 cut(s) 1074
NlaIV GGNNCC 8 cut(s) 447, 492, 684, 843, 991, 1000, 1028, 1191
NmuCI GTSAC 4 cut(s) 314, 732, 741, 1147
NspI RCATGY 1 cut(s) 1074
OliI CACNNNNGTG 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1074
PaeR7I CTCGAG 4 cut(s) 536, 766, 925, 1087
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 594
PfeI GAWTC 1 cut(s) 563
PinAI ACCGGT 1 cut(s) 865
PkrI GCNGC 8 cut(s) 208, 287, 646, 722, 860, 936, 950, 1076
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PpuMI RGGWCCY 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 441, 809
PspEI GGTNACC 1 cut(s) 741
PspGI CCWGG 2 cut(s) 441, 809
PspN4I GGNNCC 8 cut(s) 447, 492, 684, 843, 991, 1000, 1028, 1191
PspOMI GGGCCC 1 cut(s) 989
PspPI GGNCC 6 cut(s) 208, 445, 485, 989, 990, 1027
PspPPI RGGWCCY 1 cut(s) 445
PspXI VCTCGAGB 3 cut(s) 536, 766, 925
PstNI CAGNNNCTG 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 1154
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 8 cut(s) 207, 286, 645, 721, 859, 935, 949, 1075
Sau96I GGNCC 6 cut(s) 208, 445, 485, 989, 990, 1027
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 7 cut(s) 443, 641, 725, 811, 839, 988, 1167
SduI GDGCHC 4 cut(s) 254, 993, 1161, 1194
SfaNI GCATC 1 cut(s) 1119
Sfr274I CTCGAG 4 cut(s) 536, 766, 925, 1087
SgrAI CRCCGGYG 1 cut(s) 1151
SinI GGWCC 2 cut(s) 445, 1027
SlaI CTCGAG 4 cut(s) 536, 766, 925, 1087
SmiMI CAYNNNNRTG 1 cut(s) 1154
SmlI CTYRAG 4 cut(s) 536, 766, 925, 1087
SmoI CTYRAG 4 cut(s) 536, 766, 925, 1087
SphI GCATGC 1 cut(s) 1074
Sse9I AATT 2 cut(s) 35, 575
SspMI CTAG 3 cut(s) 774, 804, 1124
SstI GAGCTC 1 cut(s) 254
StyD4I CCNGG 7 cut(s) 441, 639, 723, 809, 837, 986, 1165
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 2 cut(s) 305, 1115
TaiI ACGT 2 cut(s) 587, 634
TaqI TCGA 7 cut(s) 350, 537, 767, 926, 1063, 1088, 1103
TaqII GACCGA 1 cut(s) 638
TasI AATT 2 cut(s) 35, 575
TauI GCSGC 5 cut(s) 209, 288, 723, 861, 937
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 3 cut(s) 741, 882, 983
TseFI GTSAC 4 cut(s) 314, 732, 741, 1147
TseI GCWGC 3 cut(s) 644, 948, 1074
Tsp45I GTSAC 4 cut(s) 314, 732, 741, 1147
TspDTI ATGAA 2 cut(s) 29, 592
TspGWI ACGGA 4 cut(s) 587, 770, 789, 1019
TspRI CASTG 3 cut(s) 741, 882, 983
VpaK11BI GGWCC 2 cut(s) 445, 1027
XapI RAATTY 1 cut(s) 575
XbaI TCTAGA 1 cut(s) 1123
XceI RCATGY 1 cut(s) 1074
XcmI CCANNNNNNNNNTGG 2 cut(s) 907, 1183
XhoI CTCGAG 4 cut(s) 536, 766, 925, 1087
XspI CTAG 3 cut(s) 774, 804, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.