RLG00000016929

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
11337242 .. 11340474
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016929

Sequence Viewer

Length: 1302 bp
ATGTCGAGCAGTGATTGGTCGGAGTTGGCTTTTTTCTCTGCCTTTGCTTCTAAGCCATGCATATGTGCCTTTTTGGTGGAAGCTGATGATAGCGGTGGGAAGATTGGGTTTTGGATTCGGGTCCGAACTGGGTCGTACGGTTTGTACCCGTGGGGAAATCGGTTGAGATATCCGCCCCATTCTTCAACCCATTCTTCTCCTTCCTCTGTAACCAGCACCACCACTTCTCTCTCTCCTCCTCCACCTCTACCACCCTGTCCTCCTCAGGTTGAAAGAAGTGAAATGGAATGCGTTGAAGCGGCGTTGAAGACCAGTATTAGGACGGAGATGGCCGTGATTAAGGAGGCCGTTTTCGACGACTTGTGGGGGGCGAACGCCCAGAACGGCGGCGTGCAGAATTGCGAGGACTTTTCCGTCGACGACCTTCTCGACTTTTCCAACGACGATGGGTTTGTGGAACAACAGGCTGCGGAGGAAGAGGAGGAAGACGACAAAGGCTCTGTTTTGCTCAAGAAAGAGAGCATGGAGGAAAAGGAAAATTCAACCCCGTCTTCGTGCTTGTCGGAGAAGAATGAACCTGGGCCGGAGCCGACCGAGCCCACCAGTGAACTCAGCGTTCCGGCAGACGACTTGGAAAACCTCGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGGGTTCAACACCTCTCTCCCCGCCGGGTTTCTGGCCGTGAAGCCCAAAAACCCGACCGAGAAGTGGCCAGAACCGGAGGCTCTCAAGCTCTGTTTCAAGACTCCGGTTCCGGCCAAGGCCAGAAGCAAGAGGACCCGAACCGGCGGCCGGGTTTGGTCACTAGGATCACCAACCTTCACCGAGTCTTCCTCAAGTTCAAGTTCGTCTTCCTCAACTTCTTCATGTCCCTCCAGCCCATGGCTCATTTACAACACCACCCAAGGCCCCGGAGCCTTTGGTTCGTCAGTAGAGAAGCCTCAGAAGAAGCCAAAAAGACCAGCAACAGAAGGCGGTTCGAGCCAGCCGCCTCGGCGGTGCAGCCACTGCGGCGTCCAGAAGACTCCGCAGTGGAGAACCGGCCCCAATGGAGCCAAGACTCTGTGTAACGCCTGCGGAGTCCGTTACAAGTCGGGTCGGCTCGTGCCCGAATACCGCCCCGCTTGTAGCCCGACTTTCTCGAGTGAGTTGCACTCCAACCACCACCGCAAGGTGATGGAGATACGCCGCAAGAAGGAAGTCCCGCCAGGCCCCGAATCCGGTCTGATGACGACAGCAGCAGCGGCTCCGGTTGTTCGTAGTTTTTGA

Protein Analysis

434

Amino Acids

47.02

Weight (kDa)

5.69

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 345 - 379 2.2e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011801)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 915
AccI GTMKAC 1 cut(s) 417
AclWI GGATC 1 cut(s) 850
AcoI YGGCCR 5 cut(s) 330, 711, 743, 789, 823
AcsI RAATTY 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 2 cut(s) 137, 146
AfiI CCNNNNNNNGG 8 cut(s) 318, 678, 741, 825, 915, 1204, 1228, 1253
AgsI TTSAA 8 cut(s) 186, 272, 296, 307, 543, 685, 775, 876
AjnI CCWGG 2 cut(s) 577, 1240
AluBI AGCT 2 cut(s) 83, 766
AluI AGCT 2 cut(s) 83, 766
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 1 cut(s) 850
AlwNI CAGNNNCTG 1 cut(s) 1041
Ama87I CYCGRG 3 cut(s) 641, 676, 1174
ApeKI GCWGC 4 cut(s) 467, 1035, 1271, 1274
ApoI RAATTY 1 cut(s) 538
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspS9I GGNCC 6 cut(s) 121, 581, 810, 941, 1076, 1244
AsuC2I CCSGG 3 cut(s) 703, 827, 945
AsuHPI GGTGA 3 cut(s) 837, 847, 1219
AvaI CYCGRG 3 cut(s) 641, 676, 1174
AvaII GGWCC 2 cut(s) 121, 810
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 1143
BalI TGGCCA 1 cut(s) 745
BanII GRGCYC 1 cut(s) 600
BauI CACGAG 1 cut(s) 1136
BbsI GAAGAC 6 cut(s) 314, 492, 543, 855, 876, 1061
BbvI GCAGC 4 cut(s) 454, 1047, 1283, 1286
BccI CCATC 3 cut(s) 322, 440, 1204
BceAI ACGGC 4 cut(s) 317, 332, 400, 698
BcgI CGANNNNNNTGC 2 cut(s) 1165, 1199
BciT130I CCWGG 2 cut(s) 579, 1242
BcnI CCSGG 3 cut(s) 703, 827, 945
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 1 cut(s) 839
BglI GCCNNNNNGGC 2 cut(s) 1027, 1044
Bme1390I CCNGG 5 cut(s) 579, 703, 827, 945, 1242
Bme18I GGWCC 2 cut(s) 121, 810
BmeT110I CYCGRG 3 cut(s) 641, 676, 1174
BmgT120I GGNCC 6 cut(s) 121, 581, 810, 941, 1076, 1244
BmrFI CCNGG 5 cut(s) 579, 703, 827, 945, 1242
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 6 cut(s) 314, 492, 543, 855, 876, 1061
BplI GAGNNNNNCTC 4 cut(s) 851, 883, 1172, 1204
BpmI CTGGAG 1 cut(s) 892
BpuEI CTTGAG 3 cut(s) 494, 746, 853
BpuMI CCSGG 3 cut(s) 703, 827, 945
BsaHI GRCGYC 1 cut(s) 1047
BsaJI CCNNGG 7 cut(s) 149, 578, 792, 914, 937, 943, 1025
BsaWI WCCGGW 4 cut(s) 751, 781, 1253, 1282
Bsc4I CCNNNNNNNGG 8 cut(s) 318, 678, 741, 825, 915, 1204, 1228, 1253
Bse118I RCCGGY 2 cut(s) 818, 1073
Bse1I ACTGG 3 cut(s) 133, 312, 603
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 579, 1242
BseDI CCNNGG 7 cut(s) 149, 578, 792, 914, 937, 943, 1025
BseLI CCNNNNNNNGG 8 cut(s) 318, 678, 741, 825, 915, 1204, 1228, 1253
BseMII CTCAG 3 cut(s) 278, 625, 989
BseNI ACTGG 3 cut(s) 133, 312, 603
BseRI GAGGAG 4 cut(s) 225, 228, 252, 494
BseSI GKGCMC 1 cut(s) 1143
BseX3I CGGCCG 1 cut(s) 823
BseXI GCAGC 4 cut(s) 454, 1047, 1283, 1286
BsgI GTGCAG 2 cut(s) 413, 1054
Bsh1285I CGRYCG 3 cut(s) 594, 735, 826
BsiEI CGRYCG 3 cut(s) 594, 735, 826
BsiHKCI CYCGRG 3 cut(s) 641, 676, 1174
BsiWI CGTACG 1 cut(s) 135
BslFI GGGAC 2 cut(s) 888, 1220
BslI CCNNNNNNNGG 8 cut(s) 318, 678, 741, 825, 915, 1204, 1228, 1253
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 2 cut(s) 888, 1220
BsmI GAATGC 1 cut(s) 293
BsoBI CYCGRG 3 cut(s) 641, 676, 1174
Bsp1286I GDGCHC 2 cut(s) 600, 1143
Bsp143I GATC 1 cut(s) 842
Bsp19I CCATGG 1 cut(s) 914
BspCNI CTCAG 3 cut(s) 277, 624, 988
BspPI GGATC 1 cut(s) 850
BsrFI RCCGGY 2 cut(s) 818, 1073
BsrI ACTGG 3 cut(s) 133, 312, 603
BssAI RCCGGY 2 cut(s) 818, 1073
BssECI CCNNGG 7 cut(s) 149, 578, 792, 914, 937, 943, 1025
BssMI GATC 1 cut(s) 842
BssNI GRCGYC 1 cut(s) 1047
BssSI CACGAG 1 cut(s) 1136
BssT1I CCWWGG 3 cut(s) 792, 914, 937
Bst2BI CACGAG 1 cut(s) 1136
Bst2UI CCWGG 2 cut(s) 579, 1242
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 1047
BstAPI GCANNNNNTGC 1 cut(s) 1041
BstC8I GCNNGC 3 cut(s) 392, 1019, 1108
BstDEI CTNAG 4 cut(s) 51, 264, 611, 975
BstDSI CCRYGG 2 cut(s) 149, 914
BstKTI GATC 1 cut(s) 845
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 1 cut(s) 842
BstMCI CGRYCG 3 cut(s) 594, 735, 826
BstMWI GCNNNNNNNGC 6 cut(s) 595, 1014, 1027, 1041, 1044, 1277
BstNI CCWGG 2 cut(s) 579, 1242
BstSCI CCNGG 5 cut(s) 577, 701, 825, 943, 1240
BstSLI GKGCMC 1 cut(s) 1143
BstV1I GCAGC 4 cut(s) 454, 1047, 1283, 1286
BstV2I GAAGAC 6 cut(s) 314, 492, 543, 855, 876, 1061
BstZI CGGCCG 1 cut(s) 823
Bsu36I CCTNAGG 1 cut(s) 264
BtgI CCRYGG 2 cut(s) 149, 914
BtsI GCAGTG 3 cut(s) 16, 1039, 1070
BtsIMutI CAGTG 4 cut(s) 16, 610, 1039, 1070
Cac8I GCNNGC 3 cut(s) 392, 1019, 1108
CaiI CAGNNNCTG 1 cut(s) 1041
Cfr10I RCCGGY 2 cut(s) 818, 1073
Cfr13I GGNCC 6 cut(s) 121, 581, 810, 941, 1076, 1244
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 2 cut(s) 136, 145
CviAII CATG 4 cut(s) 57, 523, 900, 915
CviQI GTAC 2 cut(s) 136, 145
DdeI CTNAG 4 cut(s) 51, 264, 611, 975
DpnI GATC 1 cut(s) 844
DpnII GATC 1 cut(s) 842
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 5 cut(s) 330, 711, 743, 789, 823
EagI CGGCCG 1 cut(s) 823
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 162
EclXI CGGCCG 1 cut(s) 823
Eco130I CCWWGG 3 cut(s) 792, 914, 937
Eco24I GRGCYC 1 cut(s) 600
Eco32I GATATC 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 121, 810
Eco52I CGGCCG 1 cut(s) 823
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 3 cut(s) 641, 676, 1174
EcoO109I RGGNCCY 3 cut(s) 810, 941, 1244
EcoRII CCWGG 2 cut(s) 577, 1240
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 3 cut(s) 792, 914, 937
EcoT22I ATGCAT 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 3 cut(s) 792, 914, 937
FaeI CATG 4 cut(s) 60, 526, 903, 918
FaiI YATR 6 cut(s) 58, 62, 64, 524, 901, 916
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FaqI GGGAC 2 cut(s) 888, 1220
FatI CATG 4 cut(s) 56, 522, 899, 914
FauI CCCGC 3 cut(s) 706, 1162, 1245
FauNDI CATATG 1 cut(s) 62
FblI GTMKAC 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 600
FspBI CTAG 1 cut(s) 839
GsuI CTGGAG 1 cut(s) 892
HgaI GACGC 1 cut(s) 1036
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 4 cut(s) 60, 526, 903, 918
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 8 cut(s) 115, 668, 778, 860, 1057, 1093, 1113, 1250
HphI GGTGA 3 cut(s) 837, 847, 1219
Hpy166II GTNNAC 2 cut(s) 418, 608
Hpy188I TCNGA 5 cut(s) 22, 125, 565, 978, 1260
Hpy188III TCNNGA 5 cut(s) 428, 511, 775, 1051, 1174
Hpy8I GTNNAC 2 cut(s) 418, 608
Hpy99I CGWCG 4 cut(s) 359, 419, 422, 446
HpyAV CCTTC 6 cut(s) 210, 434, 682, 862, 998, 1222
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 60, 394, 1035, 1186
HpyF10VI GCNNNNNNNGC 6 cut(s) 595, 1014, 1027, 1041, 1044, 1277
HpyF3I CTNAG 4 cut(s) 51, 264, 611, 975
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 4 cut(s) 60, 526, 903, 918
Kzo9I GATC 1 cut(s) 842
LmnI GCTCC 4 cut(s) 586, 947, 1085, 1285
Lsp1109I GCAGC 4 cut(s) 454, 1047, 1283, 1286
MaeI CTAG 1 cut(s) 839
MaeIII GTNAC 4 cut(s) 208, 834, 1100, 1118
MalI GATC 1 cut(s) 844
MboI GATC 1 cut(s) 842
MhlI GDGCHC 2 cut(s) 600, 1143
MlsI TGGCCA 1 cut(s) 745
MluCI AATT 2 cut(s) 397, 538
MluNI TGGCCA 1 cut(s) 745
MlyI GAGTC 5 cut(s) 772, 869, 1051, 1087, 1122
MmeI TCCRAC 3 cut(s) 462, 543, 1215
Mox20I TGGCCA 1 cut(s) 745
Mph1103I ATGCAT 1 cut(s) 62
MscI TGGCCA 1 cut(s) 745
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 61
Msp20I TGGCCA 1 cut(s) 745
MspA1I CMGCKG 1 cut(s) 1277
MspR9I CCNGG 5 cut(s) 579, 703, 827, 945, 1242
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 2 cut(s) 579, 1242
MwoI GCNNNNNNNGC 6 cut(s) 595, 1014, 1027, 1041, 1044, 1277
NciI CCSGG 3 cut(s) 703, 827, 945
NcoI CCATGG 1 cut(s) 914
NdeI CATATG 1 cut(s) 62
NdeII GATC 1 cut(s) 842
NlaIII CATG 4 cut(s) 60, 526, 903, 918
NmeAIII GCCGAG 1 cut(s) 1006
NmuCI GTSAC 1 cut(s) 834
NsiI ATGCAT 1 cut(s) 62
PaeR7I CTCGAG 2 cut(s) 641, 1174
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 3 cut(s) 115, 668, 1250
Pfl23II CGTACG 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 915
PleI GAGTC 5 cut(s) 772, 868, 1051, 1087, 1121
PpsI GAGTC 5 cut(s) 772, 868, 1051, 1087, 1121
PpuMI RGGWCCY 1 cut(s) 810
Psp5II RGGWCCY 1 cut(s) 810
Psp6I CCWGG 2 cut(s) 577, 1240
PspGI CCWGG 2 cut(s) 577, 1240
PspLI CGTACG 1 cut(s) 135
PspPI GGNCC 6 cut(s) 121, 581, 810, 941, 1076, 1244
PspPPI RGGWCCY 1 cut(s) 810
PspXI VCTCGAGB 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 1041
RsaI GTAC 2 cut(s) 137, 146
RsaNI GTAC 2 cut(s) 136, 145
RseI CAYNNNNRTG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 1 cut(s) 842
Sau96I GGNCC 6 cut(s) 121, 581, 810, 941, 1076, 1244
SchI GAGTC 5 cut(s) 772, 869, 1051, 1087, 1122
ScrFI CCNGG 5 cut(s) 579, 703, 827, 945, 1242
SduI GDGCHC 2 cut(s) 600, 1143
Sfr274I CTCGAG 2 cut(s) 641, 1174
SgrDI CGTCGACG 1 cut(s) 416
SinI GGWCC 2 cut(s) 121, 810
SlaI CTCGAG 2 cut(s) 641, 1174
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 5 cut(s) 509, 641, 761, 868, 1174
SmoI CTYRAG 5 cut(s) 509, 641, 761, 868, 1174
Sse9I AATT 2 cut(s) 397, 538
SspMI CTAG 1 cut(s) 839
StyD4I CCNGG 5 cut(s) 577, 701, 825, 943, 1240
StyI CCWWGG 3 cut(s) 792, 914, 937
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 7 cut(s) 5, 354, 417, 429, 642, 1013, 1175
TaqII GACCGA 2 cut(s) 608, 749
TasI AATT 2 cut(s) 397, 538
TauI GCSGC 7 cut(s) 302, 390, 825, 1024, 1047, 1224, 1280
TfiI GAWTC 3 cut(s) 115, 668, 1250
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 4 cut(s) 16, 610, 1046, 1070
TseFI GTSAC 1 cut(s) 834
TseI GCWGC 4 cut(s) 467, 1035, 1271, 1274
Tsp45I GTSAC 1 cut(s) 834
TspDTI ATGAA 2 cut(s) 588, 888
TspGWI ACGGA 3 cut(s) 338, 403, 1106
TspRI CASTG 4 cut(s) 16, 610, 1046, 1070
Van91I CCANNNNNTGG 1 cut(s) 915
VpaK11BI GGWCC 2 cut(s) 121, 810
XapI RAATTY 1 cut(s) 538
XhoI CTCGAG 2 cut(s) 641, 1174
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 1 cut(s) 839
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.