Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Reverse (-)

6800476 .. 6804074

Gene Structure 3599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACACATTGTTAGAGTTAGCAATACCAACTCATAACTTGGAAAAGAGAATTTTCGATCAAAGTTCCATCCAGTCAATGCCCCTTAATGCTAATTGCATGTCGTGGAATCCAAGTGAACGGCAAGTTTCTCCGCCTTTATCGAAGGATGTGAGCTTTAAAGTGGAACTTCCACCACAACTTCATCATGATGCAAAGCATTTAGGACTTCGAGTACAACCTGACCCCGGATCATGCACAACACATTCAATTAGTCAATCTCAAGGTGAGGATGAAACACGTGGTAAGGGTGTTGAAGGGACAATGAAGCCAGCTTTCTTGAGTAATCTAGATCTCATGCCGCATCCTCCTCAAGTTGGTTACAGCAATGTAGTGGGTCAATTCCATCCTTATGCTGATCCTTACTACGGTGGATTCCTGACTGCGTATGGACCACAAGCTATGCCCCCCATGGTTGGGATGGCACCTCCTCGAGTTCCATTGCCTCTCGATCTTCAAGAAGATGGACCCATTTATGTCAATGCAAAACAGTACCATGGAATCCTCCGAAGGAGACAGTCACGTGCAAAGTTGGAAGCTCAAAACAAACTTCTAAAAGCTCGAAAGCCATATCTTCATGAGTCTCGGCATCAACATGCACTGAACAGGGTAAGGGGTTCTGGTGGACGTTTTCTCAGCAAAAAAGAGCTCCAACAATATGATCAGAACCCCACCAGTAGCTCCAATGATCATGTTTCGGGGTCTATCAACTTGCATCAGAAGGATACACCAGAGAGAGAAAGTCATCACTCGGGAAGCAGTGATCTAGTCACTTCTGTTGCAAGTCACTCGGGCATAACAAGTGTTTCCGGTACCAATGCTATCTTTCGGCAGCCAGATCGCAGGTTCTCAGGTGGCATGTCTCCCCACATGAGTGGAGCCATGCAATTCAGTGGGGGGCTTATGGGCAGTGGAAATCAGCACTGTGCTTCTTTTGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

327

Amino Acids

36.0

Weight (kDa)

9.06

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	170 - 224	5.6e-28	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	873
Acc65I	GGTACC	1 cut(s)	851
AccB1I	GGYRCC	2 cut(s)	463, 851
AciI	CCGC	2 cut(s)	134, 341
AclWI	GGATC	2 cut(s)	238, 392
AcsI	RAATTY	1 cut(s)	51
AcvI	CACGTG	2 cut(s)	281, 563
AfaI	GTAC	3 cut(s)	216, 533, 853
AfiI	CCNNNNNNNGG	5 cut(s)	227, 356, 407, 455, 456
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	249, 296, 497
AleI	CACNNNNGTG	1 cut(s)	912
AluBI	AGCT	7 cut(s)	156, 314, 440, 578, 599, 688, 720
AluI	AGCT	7 cut(s)	156, 314, 440, 578, 599, 688, 720
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	3 cut(s)	547, 627, 906
AlwI	GGATC	2 cut(s)	238, 392
Ama87I	CYCGRG	3 cut(s)	471, 790, 829
ApeKI	GCWGC	1 cut(s)	871
ApoI	RAATTY	1 cut(s)	51
Asp718I	GGTACC	1 cut(s)	851
AspS9I	GGNCC	2 cut(s)	431, 506
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	3 cut(s)	471, 790, 829
AvaII	GGWCC	2 cut(s)	431, 506
BanI	GGYRCC	2 cut(s)	463, 851
BanII	GRGCYC	1 cut(s)	690
BbrPI	CACGTG	2 cut(s)	281, 563
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	4 cut(s)	77, 393, 454, 497
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	4 cut(s)	810, 844, 860, 894
BciVI	GTATCC	1 cut(s)	757
BclI	TGATCA	2 cut(s)	700, 727
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	547, 627, 906
BfaI	CTAG	2 cut(s)	329, 806
BfuAI	ACCTGC	1 cut(s)	873
BfuI	GTATCC	1 cut(s)	757
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	2 cut(s)	341, 872
BlsI	GCNGC	2 cut(s)	342, 873
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	431, 506
BmeT110I	CYCGRG	3 cut(s)	471, 790, 829
BmgT120I	GGNCC	2 cut(s)	431, 506
BmiI	GGNNCC	4 cut(s)	465, 508, 853, 919
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	181, 352, 637, 763
BpuEI	CTTGAG	3 cut(s)	246, 336, 340
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	2 cut(s)	281, 563
BsaJI	CCNNGG	3 cut(s)	226, 450, 535
BsaWI	WCCGGW	2 cut(s)	848, 978
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 356, 407, 455, 456
Bse1I	ACTGG	2 cut(s)	73, 714
Bse3DI	GCAATG	2 cut(s)	373, 479
BseDI	CCNNGG	3 cut(s)	226, 450, 535
BseGI	GGATG	6 cut(s)	69, 154, 277, 343, 385, 465
BseLI	CCNNNNNNNGG	5 cut(s)	227, 356, 407, 455, 456
BseMI	GCAATG	2 cut(s)	373, 479
BseMII	CTCAG	2 cut(s)	688, 903
BseNI	ACTGG	2 cut(s)	73, 714
BseRI	GAGGAG	2 cut(s)	339, 459
BseXI	GCAGC	1 cut(s)	883
BshNI	GGYRCC	2 cut(s)	463, 851
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	3 cut(s)	471, 790, 829
BsiSI	CCGG	3 cut(s)	228, 849, 979
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	5 cut(s)	227, 356, 407, 455, 456
BsmAI	GTCTC	3 cut(s)	547, 627, 906
BsmFI	GGGAC	1 cut(s)	313
BsoBI	CYCGRG	3 cut(s)	471, 790, 829
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
Bsp19I	CCATGG	2 cut(s)	450, 535
BspACI	CCGC	2 cut(s)	134, 341
BspCNI	CTCAG	2 cut(s)	687, 902
BspHI	TCATGA	2 cut(s)	187, 616
BspLI	GGNNCC	4 cut(s)	465, 508, 853, 919
BspMI	ACCTGC	1 cut(s)	873
BspPI	GGATC	2 cut(s)	238, 392
BspT107I	GGYRCC	2 cut(s)	463, 851
BsrDI	GCAATG	2 cut(s)	373, 479
BsrI	ACTGG	2 cut(s)	73, 714
BssECI	CCNNGG	3 cut(s)	226, 450, 535
BssMI	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
BssT1I	CCWWGG	2 cut(s)	450, 535
Bst4CI	ACNGT	4 cut(s)	410, 531, 558, 965
BstBAI	YACGTR	2 cut(s)	281, 563
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	674, 889
BstDSI	CCRYGG	2 cut(s)	450, 535
BstF5I	GGATG	6 cut(s)	69, 154, 277, 343, 385, 465
BstKTI	GATC	9 cut(s)	61, 233, 334, 400, 493, 703, 730, 805, 880
BstMAI	GTCTC	3 cut(s)	547, 627, 906
BstMBI	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
BstNSI	RCATGY	3 cut(s)	103, 638, 901
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	883
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	757
BtgI	CCRYGG	2 cut(s)	450, 535
BtsCI	GGATG	6 cut(s)	69, 154, 277, 343, 385, 465
BtsI	GCAGTG	2 cut(s)	805, 955
BtsIMutI	CAGTG	5 cut(s)	638, 805, 937, 955, 961
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	1 cut(s)	312
CciI	TCATGA	2 cut(s)	187, 616
Cfr13I	GGNCC	2 cut(s)	431, 506
Csp6I	GTAC	3 cut(s)	215, 532, 852
CviQI	GTAC	3 cut(s)	215, 532, 852
DdeI	CTNAG	2 cut(s)	674, 889
DpnI	GATC	9 cut(s)	60, 232, 333, 399, 492, 702, 729, 804, 879
DpnII	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
DraI	TTTAAA	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	450, 535
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	431, 506
Eco53kI	GAGCTC	1 cut(s)	688
Eco72I	CACGTG	2 cut(s)	281, 563
Eco88I	CYCGRG	3 cut(s)	471, 790, 829
EcoICRI	GAGCTC	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	450, 535
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	2 cut(s)	450, 535
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	313
FbaI	TGATCA	2 cut(s)	700, 727
Fnu4HI	GCNGC	2 cut(s)	341, 872
FokI	GGATG	6 cut(s)	56, 161, 284, 330, 372, 472
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	2 cut(s)	341, 872
FspBI	CTAG	2 cut(s)	329, 806
GluI	GCNGC	2 cut(s)	341, 872
HapII	CCGG	3 cut(s)	228, 849, 979
HinfI	GANTC	4 cut(s)	109, 414, 540, 620
HpaII	CCGG	3 cut(s)	228, 849, 979
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	119, 665
Hpy188I	TCNGA	3 cut(s)	548, 705, 759
Hpy188III	TCNNGA	8 cut(s)	188, 319, 329, 418, 488, 497, 617, 792
Hpy8I	GTNNAC	2 cut(s)	119, 665
HpyAV	CCTTC	4 cut(s)	139, 290, 543, 754
HpyCH4III	ACNGT	4 cut(s)	410, 531, 558, 965
HpyCH4IV	ACGT	3 cut(s)	280, 562, 667
HpyCH4V	TGCA	9 cut(s)	99, 194, 237, 524, 566, 638, 754, 821, 925
HpyF3I	CTNAG	2 cut(s)	674, 889
HpySE526I	ACGT	3 cut(s)	280, 562, 667
KpnI	GGTACC	1 cut(s)	855
Ksp22I	TGATCA	2 cut(s)	700, 727
Kzo9I	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
LmnI	GCTCC	3 cut(s)	693, 725, 917
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	4 cut(s)	181, 352, 637, 763
MaeI	CTAG	2 cut(s)	329, 806
MaeII	ACGT	3 cut(s)	280, 562, 667
MaeIII	GTNAC	4 cut(s)	359, 558, 808, 824
MalI	GATC	9 cut(s)	60, 232, 333, 399, 492, 702, 729, 804, 879
MboI	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
MboII	GAAGA	3 cut(s)	485, 512, 605
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	5 cut(s)	51, 94, 249, 380, 926
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	2 cut(s)	552, 715
MnlI	CCTC	7 cut(s)	262, 357, 360, 477, 480, 495, 554
MseI	TTAA	2 cut(s)	87, 159
MslI	CAYNNNNRTG	4 cut(s)	189, 390, 633, 912
MspI	CCGG	3 cut(s)	228, 849, 979
MspR9I	CCNGG	1 cut(s)	228
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	2 cut(s)	450, 535
NdeII	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
NlaIV	GGNNCC	4 cut(s)	465, 508, 853, 919
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	3 cut(s)	558, 808, 824
NspI	RCATGY	3 cut(s)	103, 638, 901
OliI	CACNNNNGTG	1 cut(s)	912
PaeR7I	CTCGAG	1 cut(s)	471
PagI	TCATGA	2 cut(s)	187, 616
PfeI	GAWTC	3 cut(s)	109, 414, 540
PkrI	GCNGC	2 cut(s)	342, 873
PleI	GAGTC	1 cut(s)	628
PmaCI	CACGTG	2 cut(s)	281, 563
PmlI	CACGTG	2 cut(s)	281, 563
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	2 cut(s)	281, 563
Psp124BI	GAGCTC	1 cut(s)	690
PspCI	CACGTG	2 cut(s)	281, 563
PspN4I	GGNNCC	4 cut(s)	465, 508, 853, 919
PspPI	GGNCC	2 cut(s)	431, 506
PspXI	VCTCGAGB	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	3 cut(s)	216, 533, 853
RsaNI	GTAC	3 cut(s)	215, 532, 852
RseI	CAYNNNNRTG	4 cut(s)	189, 390, 633, 912
SacI	GAGCTC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	87, 159
SatI	GCNGC	2 cut(s)	341, 872
Sau3AI	GATC	9 cut(s)	58, 230, 331, 397, 490, 700, 727, 802, 877
Sau96I	GGNCC	2 cut(s)	431, 506
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	4 cut(s)	181, 352, 637, 763
Sfr274I	CTCGAG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	431, 506
SlaI	CTCGAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	4 cut(s)	189, 390, 633, 912
SmlI	CTYRAG	4 cut(s)	261, 319, 351, 471
SmoI	CTYRAG	4 cut(s)	261, 319, 351, 471
Sse9I	AATT	5 cut(s)	51, 94, 249, 380, 926
SsiI	CCGC	2 cut(s)	134, 341
SspMI	CTAG	2 cut(s)	329, 806
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	450, 535
TaaI	ACNGT	4 cut(s)	410, 531, 558, 965
TaiI	ACGT	3 cut(s)	283, 565, 670
TaqI	TCGA	6 cut(s)	57, 143, 211, 472, 489, 601
TasI	AATT	5 cut(s)	51, 94, 249, 380, 926
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	109, 414, 540
Tru1I	TTAA	2 cut(s)	87, 159
Tru9I	TTAA	2 cut(s)	87, 159
TscAI	CASTG	5 cut(s)	645, 805, 937, 955, 968
TseFI	GTSAC	3 cut(s)	558, 808, 824
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	3 cut(s)	558, 808, 824
TspDTI	ATGAA	4 cut(s)	173, 288, 320, 605
TspRI	CASTG	5 cut(s)	645, 805, 937, 955, 968
VpaK11BI	GGWCC	2 cut(s)	431, 506
XapI	RAATTY	1 cut(s)	51
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	3 cut(s)	103, 638, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	471
XspI	CTAG	2 cut(s)	329, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.