Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000164.1

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Forward (+)

123762 .. 124577

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000164.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgctttaccaaactcaccacccctcctttttattccaatttcatccccattcttcaacatattcttctccttcctctgtaaccagcaccaccacttctctctcgcctcctccacctccacctctaccaccctgtccgcctcaggttgaaagaagtgaaatggaatgcgttgcaggggcgttgaagaccagtatcaggacggagatggccgtcaaggaggccgttttcgacgacttgtgggggttgaacgcccagaacggcggcgtgcagaattttgaggacttttccgtcgacgaccttctcgacttttccaacgacgatgggtttgtggaacaacaggctgaggaggaagaggaggaggacgacaaaggctctgttttgcccaagaaagagagcatggaggaaaaggaaaactcaaccccgtcttcgtgcttgtcggagaagaatgaacttgggccggagccgaccgagcccaccagtgaactcagcgttccggcagacgacttggaaaacctcgagtggttgtctcatttcgtggaggattccttctcggggttcaacaatgcattgtcctttaaatcgatatactattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

198

Amino Acids

22.05

Weight (kDa)

4.13

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	2 cut(s)	137, 261
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	195, 552
AgsI	TTSAA	5 cut(s)	57, 149, 184, 247, 559
Alw26I	GTCTC	1 cut(s)	531
Ama87I	CYCGRG	2 cut(s)	515, 550
AoxI	GGCC	3 cut(s)	207, 219, 455
ApoI	RAATTY	1 cut(s)	271
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	8
AvaI	CYCGRG	2 cut(s)	515, 550
AxyI	CCTNAGG	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	191, 417
BbvCI	CCTCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	199, 314
BceAI	ACGGC	3 cut(s)	194, 206, 274
BcoDI	GTCTC	1 cut(s)	531
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	515, 550
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	191, 417
Bpu10I	CCTNAGC	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 552
Bse1I	ACTGG	2 cut(s)	189, 477
Bse21I	CCTNAGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	581
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	195, 552
BseMII	CTCAG	3 cut(s)	155, 333, 499
BseNI	ACTGG	2 cut(s)	189, 477
BseRI	GAGGAG	4 cut(s)	99, 359, 368, 371
BsgI	GTGCAG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	209, 221, 457
BshVI	ATCGAT	1 cut(s)	581
BsiEI	CGRYCG	1 cut(s)	468
BsiHKCI	CYCGRG	2 cut(s)	515, 550
BsiSI	CCGG	2 cut(s)	458, 494
BslI	CCNNNNNNNGG	2 cut(s)	195, 552
BsmAI	GTCTC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	209, 221, 457
BsoBI	CYCGRG	2 cut(s)	515, 550
Bsp1286I	GDGCHC	1 cut(s)	474
BspACI	CCGC	2 cut(s)	137, 261
BspANI	GGCC	3 cut(s)	209, 221, 457
BspCNI	CTCAG	3 cut(s)	154, 334, 498
BspDI	ATCGAT	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	189, 477
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	141, 342, 485
BstF5I	GGATG	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstV2I	GAAGAC	2 cut(s)	191, 417
Bsu15I	ATCGAT	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	209, 221, 457
BsuTUI	ATCGAT	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	455
ClaI	ATCGAT	1 cut(s)	581
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	7 cut(s)	209, 221, 341, 372, 457, 463, 472
CviKI_1	RGCY	7 cut(s)	209, 221, 341, 372, 457, 463, 472
DdeI	CTNAG	3 cut(s)	141, 342, 485
DraI	TTTAAA	1 cut(s)	577
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	515, 550
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	1 cut(s)	400
FaiI	YATR	3 cut(s)	61, 398, 586
FatI	CATG	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	209, 221, 457
HapII	CCGG	2 cut(s)	458, 494
Hin1II	CATG	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	2 cut(s)	458, 494
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	292, 482
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	2 cut(s)	196, 302
Hpy8I	GTNNAC	2 cut(s)	292, 482
Hpy99I	CGWCG	4 cut(s)	233, 293, 296, 320
HpyAV	CCTTC	3 cut(s)	81, 308, 556
HpyCH4V	TGCA	3 cut(s)	173, 268, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	3 cut(s)	141, 342, 485
Hsp92II	CATG	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	79
MboII	GAAGA	6 cut(s)	45, 57, 196, 362, 417, 454
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	2 cut(s)	38, 271
MmeI	TCCRAC	2 cut(s)	336, 417
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	1 cut(s)	576
MspI	CCGG	2 cut(s)	458, 494
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	568
PaeR7I	CTCGAG	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	455
PspXI	VCTCGAGB	1 cut(s)	515
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	5 cut(s)	118, 124, 147, 300, 516
Sfr274I	CTCGAG	1 cut(s)	515
SgrDI	CGTCGACG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	38, 271
SsiI	CCGC	2 cut(s)	137, 261
TaqI	TCGA	5 cut(s)	228, 291, 303, 516, 581
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	2 cut(s)	38, 271
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	32, 462
TspGWI	ACGGA	2 cut(s)	215, 277
TspRI	CASTG	1 cut(s)	484
XapI	RAATTY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.