MD15G1249700.v1.1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
20880980 .. 20882745
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1249700.v1.1.491

Sequence Viewer

Length: 996 bp
ATGGAATGCGTCGAAGCGGCTCTGAAGACCAGTATTAGGAAGGAGATGGCTGTGAAGGCGACCGGCCCACAAGTGGTGGTTTTCGACGACTTCTTGTGGGGCGGCGCCGTCGTCAACGGCCAAAACGCTTGCGACGATTTCTCAGTCGACGACCTTCTCGACTTCTCCAACGAAGACGGGTTCGTCGAAACGGAGGCCGAGGAAGAAGGCGATAAGGAAAAAGTCAAGGGCTTTGTCTCCGTTTCGCTCCAAAAGCAGAACCAGGAGACGGAAAAGTCCAATTTGTCGGAAAAAATCGAACCAGCGAGCGAACTCAGCGTTCCGGCGGACGACTTGGAGAACCTCGAATGGTTGTCTCATTTCGTCGAGGATTCCTTCTTGGAATTCTCCACGGCTCTTCCGGCCGGGTTCTTGCCCGAGAAGCCCAAGTCCGAGAAGAGACCCGACCTGGAAACCCCTTTTCCGGAAAAGCCCTGTTTCAAGACTCCAGTTCCGGCGAAGGCCAGAAGTAAGCGGAGGCGGACCGGCGGCAGGGTCTGGTCCCTTGGGTCGCCGTCGCTCACGGAGTCGTCCTCGAGTTCGAGTTCGTCGTCATCCTCCTCCCCGTCGAGCCCCTGGACCATTTACCCCGCCACCCAGAACCAGGAATCGGCCGAACCGGTCTTGTCTGTTGAGAAGCCCCCGAGGAAGCCGAAGAGAAGACTGGTGGACGGAAGTTCGAGCCAACCGCCGCGGCGGTGCAGCCATTGTGGGGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCGAACGGAGCCAAGACCCTCTGTAACGCATGCGGGGTCCGGTACAAGTCAGGCCGGCTCTTACCCGAGTACAGGCCTGCATGCAGCCCGACGTTTTCGAGTGAGTTGCACTCCAACCACCACCGGAAAGTTATAGAGATGCGGCGGAAGAAGGAAGGCCCGGGCACGCCCGAACCCAGTACGACCATACTTCCGGCGGTGCCCAGTTTTTGA

Protein Analysis

332

Amino Acids

36.38

Weight (kDa)

6.29

Isoelectric Point (pI)

70.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 247 - 281 2.1e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011801)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 274
AccB1I GGYRCC 2 cut(s) 104, 982
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 733
AccIII TCCGGA 1 cut(s) 463
AcoI YGGCCR 3 cut(s) 118, 402, 651
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 3 cut(s) 827, 854, 964
AgeI ACCGGT 1 cut(s) 658
AgsI TTSAA 1 cut(s) 481
AjnI CCWGG 4 cut(s) 261, 447, 614, 642
Alw26I GTCTC 4 cut(s) 241, 260, 360, 433
AlwNI CAGNNNCTG 1 cut(s) 537
Ama87I CYCGRG 5 cut(s) 416, 574, 682, 848, 943
Aor13HI TCCGGA 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 741, 867
ApoI RAATTY 1 cut(s) 383
AsiGI ACCGGT 1 cut(s) 658
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 8 cut(s) 65, 522, 540, 618, 754, 782, 820, 941
AsuC2I CCSGG 3 cut(s) 406, 944, 945
AvaI CYCGRG 5 cut(s) 416, 574, 682, 848, 943
AvaII GGWCC 5 cut(s) 522, 540, 618, 754, 820
BaeGI GKGCMC 2 cut(s) 950, 987
BanI GGYRCC 2 cut(s) 104, 982
BanII GRGCYC 1 cut(s) 614
BbsI GAAGAC 3 cut(s) 32, 180, 706
BbvI GCAGC 2 cut(s) 753, 879
BccI CCATC 1 cut(s) 40
BceAI ACGGC 4 cut(s) 92, 133, 408, 538
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 4 cut(s) 263, 449, 616, 644
BcnI CCSGG 3 cut(s) 406, 944, 945
BcoDI GTCTC 4 cut(s) 241, 260, 360, 433
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 8 cut(s) 18, 103, 529, 731, 734, 742, 868, 926
BlsI GCNGC 8 cut(s) 19, 104, 530, 732, 735, 743, 869, 927
Bme1390I CCNGG 7 cut(s) 263, 406, 449, 616, 644, 944, 945
Bme18I GGWCC 5 cut(s) 522, 540, 618, 754, 820
BmeT110I CYCGRG 5 cut(s) 416, 574, 682, 848, 943
BmgT120I GGNCC 8 cut(s) 65, 522, 540, 618, 754, 782, 820, 941
BmiI GGNNCC 6 cut(s) 106, 542, 755, 793, 821, 984
BmrFI CCNGG 7 cut(s) 263, 406, 449, 616, 644, 944, 945
BmrI ACTGGG 2 cut(s) 954, 981
BmsI GCATC 1 cut(s) 912
BmuI ACTGGG 2 cut(s) 954, 981
BpiI GAAGAC 3 cut(s) 32, 180, 706
BplI GAGNNNNNCTC 4 cut(s) 557, 589, 878, 910
BpmI CTGGAG 1 cut(s) 471
BpuMI CCSGG 3 cut(s) 406, 944, 945
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 7 cut(s) 198, 390, 544, 614, 683, 731, 943
BsaWI WCCGGW 4 cut(s) 463, 658, 822, 906
Bse118I RCCGGY 5 cut(s) 62, 524, 658, 779, 837
Bse1I ACTGG 5 cut(s) 30, 488, 708, 960, 987
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 4 cut(s) 263, 449, 616, 644
BseDI CCNNGG 7 cut(s) 198, 390, 544, 614, 683, 731, 943
BseGI GGATG 1 cut(s) 593
BseMII CTCAG 3 cut(s) 156, 328, 782
BseNI ACTGG 5 cut(s) 30, 488, 708, 960, 987
BseRI GAGGAG 1 cut(s) 589
BseSI GKGCMC 2 cut(s) 950, 987
BseX3I CGGCCG 2 cut(s) 402, 651
BseXI GCAGC 2 cut(s) 753, 879
BsgI GTGCAG 1 cut(s) 760
Bsh1236I CGCG 1 cut(s) 733
Bsh1285I CGRYCG 3 cut(s) 63, 405, 654
BshNI GGYRCC 2 cut(s) 104, 982
BshTI ACCGGT 1 cut(s) 658
BsiEI CGRYCG 3 cut(s) 63, 405, 654
BsiHKCI CYCGRG 5 cut(s) 416, 574, 682, 848, 943
BslFI GGGAC 1 cut(s) 526
BsmAI GTCTC 4 cut(s) 241, 260, 360, 433
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 526
BsmI GAATGC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 433
BsoBI CYCGRG 5 cut(s) 416, 574, 682, 848, 943
Bsp1286I GDGCHC 3 cut(s) 614, 950, 987
Bsp13I TCCGGA 1 cut(s) 463
BspCNI CTCAG 3 cut(s) 155, 327, 781
BspEI TCCGGA 1 cut(s) 463
BspFNI CGCG 1 cut(s) 733
BspLI GGNNCC 6 cut(s) 106, 542, 755, 793, 821, 984
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 104, 982
BspTNI GGTCTC 1 cut(s) 433
BsrFI RCCGGY 5 cut(s) 62, 524, 658, 779, 837
BsrI ACTGG 5 cut(s) 30, 488, 708, 960, 987
BssAI RCCGGY 5 cut(s) 62, 524, 658, 779, 837
BssECI CCNNGG 7 cut(s) 198, 390, 544, 614, 683, 731, 943
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 544
Bst2UI CCWGG 4 cut(s) 263, 449, 616, 644
Bst6I CTCTTC 3 cut(s) 402, 431, 689
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 7 cut(s) 130, 307, 814, 839, 861, 865, 950
BstDEI CTNAG 3 cut(s) 142, 314, 768
BstDSI CCRYGG 2 cut(s) 390, 731
BstF5I GGATG 1 cut(s) 593
BstFNI CGCG 1 cut(s) 733
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstMAI GTCTC 4 cut(s) 241, 260, 360, 433
BstMCI CGRYCG 3 cut(s) 63, 405, 654
BstMWI GCNNNNNNNGC 5 cut(s) 56, 253, 315, 401, 421
BstNI CCWGG 4 cut(s) 263, 449, 616, 644
BstNSI RCATGY 2 cut(s) 816, 867
BstSCI CCNGG 7 cut(s) 261, 404, 447, 614, 642, 942, 943
BstSLI GKGCMC 2 cut(s) 950, 987
BstUI CGCG 1 cut(s) 733
BstV1I GCAGC 2 cut(s) 753, 879
BstV2I GAAGAC 3 cut(s) 32, 180, 706
BstZI CGGCCG 2 cut(s) 402, 651
BtgI CCRYGG 2 cut(s) 390, 731
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 776
Cac8I GCNNGC 7 cut(s) 130, 307, 814, 839, 861, 865, 950
CaiI CAGNNNCTG 1 cut(s) 537
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 5 cut(s) 62, 524, 658, 779, 837
Cfr13I GGNCC 8 cut(s) 65, 522, 540, 618, 754, 782, 820, 941
Cfr42I CCGCGG 1 cut(s) 734
Cfr9I CCCGGG 1 cut(s) 943
CpoI CGGWCCG 1 cut(s) 522
Csp6I GTAC 3 cut(s) 826, 853, 963
CspAI ACCGGT 1 cut(s) 658
CspI CGGWCCG 1 cut(s) 522
CviAII CATG 2 cut(s) 813, 864
CviQI GTAC 3 cut(s) 826, 853, 963
DdeI CTNAG 3 cut(s) 142, 314, 768
DinI GGCGCC 1 cut(s) 106
DrdI GACNNNNNNGTC 2 cut(s) 182, 274
DseDI GACNNNNNNGTC 2 cut(s) 182, 274
EaeI YGGCCR 3 cut(s) 118, 402, 651
EagI CGGCCG 2 cut(s) 402, 651
Eam1104I CTCTTC 3 cut(s) 402, 431, 689
EarI CTCTTC 3 cut(s) 402, 431, 689
EciI GGCGGA 3 cut(s) 341, 535, 943
EclXI CGGCCG 2 cut(s) 402, 651
Eco130I CCWWGG 1 cut(s) 544
Eco147I AGGCCT 1 cut(s) 859
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 433
Eco47I GGWCC 5 cut(s) 522, 540, 618, 754, 820
Eco52I CGGCCG 2 cut(s) 402, 651
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 5 cut(s) 416, 574, 682, 848, 943
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 4 cut(s) 261, 447, 614, 642
EcoT14I CCWWGG 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 614
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 2 cut(s) 816, 867
FaiI YATR 4 cut(s) 814, 865, 917, 971
FaqI GGGAC 1 cut(s) 526
FatI CATG 2 cut(s) 812, 863
FauI CCCGC 2 cut(s) 637, 809
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 8 cut(s) 18, 103, 529, 731, 734, 742, 868, 926
FokI GGATG 1 cut(s) 580
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 8 cut(s) 18, 103, 529, 731, 734, 742, 868, 926
GlaI GCGC 1 cut(s) 106
GluI GCNGC 8 cut(s) 18, 103, 529, 731, 734, 742, 868, 926
GsuI CTGGAG 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 108
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 816, 867
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 2 cut(s) 115, 148
HindII GTYRAC 2 cut(s) 115, 148
HinfI GANTC 4 cut(s) 371, 484, 566, 647
Hpy166II GTNNAC 3 cut(s) 115, 148, 709
Hpy188I TCNGA 3 cut(s) 24, 289, 433
Hpy188III TCNNGA 4 cut(s) 158, 464, 481, 757
Hpy8I GTNNAC 3 cut(s) 115, 148, 709
HpyAV CCTTC 8 cut(s) 34, 49, 164, 200, 385, 493, 928, 932
HpyCH4IV ACGT 1 cut(s) 875
HpyCH4V TGCA 4 cut(s) 741, 863, 867, 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 253, 315, 401, 421
HpyF3I CTNAG 3 cut(s) 142, 314, 768
HpySE526I ACGT 1 cut(s) 875
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 816, 867
HspAI GCGC 1 cut(s) 105
KasI GGCGCC 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 463
KroI GCCGGC 1 cut(s) 837
KroNI GCCGGC 1 cut(s) 839
KspI CCGCGG 1 cut(s) 734
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 252, 791
Lsp1109I GCAGC 2 cut(s) 753, 879
LweI GCATC 1 cut(s) 912
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 1 cut(s) 806
MboII GAAGA 8 cut(s) 37, 185, 215, 389, 448, 706, 711, 943
MhlI GDGCHC 3 cut(s) 614, 950, 987
MluCI AATT 2 cut(s) 280, 383
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 2 cut(s) 478, 575
MmeI TCCRAC 3 cut(s) 192, 267, 921
MroI TCCGGA 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 837
MspA1I CMGCKG 1 cut(s) 733
MspR9I CCNGG 7 cut(s) 263, 406, 449, 616, 644, 944, 945
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 4 cut(s) 263, 449, 616, 644
MvnI CGCG 1 cut(s) 733
MwoI GCNNNNNNNGC 5 cut(s) 56, 253, 315, 401, 421
NaeI GCCGGC 1 cut(s) 839
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 3 cut(s) 406, 944, 945
NgoMIV GCCGGC 1 cut(s) 837
NlaIII CATG 2 cut(s) 816, 867
NlaIV GGNNCC 6 cut(s) 106, 542, 755, 793, 821, 984
NmeAIII GCCGAG 1 cut(s) 223
NspI RCATGY 2 cut(s) 816, 867
PaeI GCATGC 2 cut(s) 816, 867
PaeR7I CTCGAG 1 cut(s) 574
PceI AGGCCT 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 156, 183, 587
PctI GAATGC 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 839
PfeI GAWTC 2 cut(s) 371, 647
PinAI ACCGGT 1 cut(s) 658
PkrI GCNGC 8 cut(s) 19, 104, 530, 732, 735, 743, 869, 927
PleI GAGTC 2 cut(s) 478, 574
PluTI GGCGCC 1 cut(s) 108
PpsI GAGTC 2 cut(s) 478, 574
Psp6I CCWGG 4 cut(s) 261, 447, 614, 642
PspGI CCWGG 4 cut(s) 261, 447, 614, 642
PspN4I GGNNCC 6 cut(s) 106, 542, 755, 793, 821, 984
PspPI GGNCC 8 cut(s) 65, 522, 540, 618, 754, 782, 820, 941
PspXI VCTCGAGB 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 537
RsaI GTAC 3 cut(s) 827, 854, 964
RsaNI GTAC 3 cut(s) 826, 853, 963
Rsr2I CGGWCCG 1 cut(s) 522
RsrII CGGWCCG 1 cut(s) 522
SacII CCGCGG 1 cut(s) 734
SalI GTCGAC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 402
SatI GCNGC 8 cut(s) 18, 103, 529, 731, 734, 742, 868, 926
Sau96I GGNCC 8 cut(s) 65, 522, 540, 618, 754, 782, 820, 941
SchI GAGTC 2 cut(s) 478, 575
ScrFI CCNGG 7 cut(s) 263, 406, 449, 616, 644, 944, 945
SduI GDGCHC 3 cut(s) 614, 950, 987
SetI ASST 4 cut(s) 156, 345, 450, 878
SfaNI GCATC 1 cut(s) 912
SfoI GGCGCC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 574
Sfr303I CCGCGG 1 cut(s) 734
SgrBI CCGCGG 1 cut(s) 734
SinI GGWCC 5 cut(s) 522, 540, 618, 754, 820
SlaI CTCGAG 1 cut(s) 574
SmaI CCCGGG 1 cut(s) 945
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
SphI GCATGC 2 cut(s) 816, 867
SrfI GCCCGGGC 1 cut(s) 945
Sse9I AATT 2 cut(s) 280, 383
SseBI AGGCCT 1 cut(s) 859
SspDI GGCGCC 1 cut(s) 104
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 7 cut(s) 261, 404, 447, 614, 642, 942, 943
StyI CCWWGG 1 cut(s) 544
TaiI ACGT 1 cut(s) 878
TasI AATT 2 cut(s) 280, 383
TatI WGTACW 1 cut(s) 852
TauI GCSGC 6 cut(s) 20, 105, 531, 733, 736, 928
TfiI GAWTC 2 cut(s) 371, 647
TscAI CASTG 1 cut(s) 776
TseI GCWGC 2 cut(s) 741, 867
TspGWI ACGGA 6 cut(s) 206, 229, 284, 578, 726, 804
TspMI CCCGGG 1 cut(s) 943
TspRI CASTG 1 cut(s) 776
VpaK11BI GGWCC 5 cut(s) 522, 540, 618, 754, 820
XapI RAATTY 1 cut(s) 383
XceI RCATGY 2 cut(s) 816, 867
XhoI CTCGAG 1 cut(s) 574
XmaI CCCGGG 1 cut(s) 943
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.