Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Reverse (-)

26495875 .. 26498014

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAACAAGCCGCGTTGAAGAGCAGCGTCAGGAAAGAGATGGCTCTCAAAACGACTTCTCCGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAAAATGGCTTTTCCGTCGACGATTTCTCTGTAGACGACTTGCTTGACTTGTCAAACGATGACGTTTTTGCCGACGAAGAAACTGACCTCAAGGCTCAACATGAGATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAGACGCTCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAAGCGAACTCTCTCTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGGAGGACTCCTTCACGGAATATTCGGGTCCAAACCTCACCGGAACCCCGACTGAGAAACCGGCGTGGTTAACGGGTGACCGGAAACATCCTGTGACTGCAGTCACGGAAGAGACCTGTTTCAAATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGCCTCAAGGTCTGGTCGCTTGGTTCGTCGTCCTCCTCGGGTCCTTCCTCGTCCGGTTCGACCTCCTCCTCCTCTTCGGGTCCTTCCAGCCCGTGGTTCTCCGGCGCTGAGCTGCTCGAGCCTGTGGTCACGTCAGAGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCAGCCGAGTCTGTTTTCTCCGGTGAGCTGCAGCAGCTGCAACCTCAGCGAAAGTGCAGCCACTGCGGCGTTCAGAAAACTCCGCAGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACAAGTCGGGTAGGTTGCTACCGGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGCTGCACTCGAACCACCACCGGAAAGTCATAGAGATGAGGCGGAAGAAGGAGCCAACCAGTGACAACGAAACCGGTTTAAACCAGCTGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

339

Amino Acids

37.09

Weight (kDa)

5.7

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	251 - 285	6.1e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	618
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	2 cut(s)	114, 129
AccII	CGCG	1 cut(s)	14
AciI	CCGC	9 cut(s)	12, 93, 320, 520, 762, 779, 828, 873, 940
AfaI	GTAC	2 cut(s)	839, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	493, 618
AgeI	ACCGGT	1 cut(s)	971
AgsI	TTSAA	2 cut(s)	19, 481
AjiI	CACGTC	1 cut(s)	657
AluBI	AGCT	6 cut(s)	637, 724, 733, 901, 985, 1004
AluI	AGCT	6 cut(s)	637, 724, 733, 901, 985, 1004
Alw26I	GTCTC	2 cut(s)	234, 464
AlwNI	CAGNNNCTG	2 cut(s)	733, 759
Ama87I	CYCGRG	3 cut(s)	562, 641, 892
AoxI	GGCC	3 cut(s)	526, 665, 794
ApeKI	GCWGC	9 cut(s)	24, 258, 637, 724, 727, 730, 733, 753, 901
AsiGI	ACCGGT	1 cut(s)	971
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	5 cut(s)	205, 386, 566, 605, 794
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	4 cut(s)	79, 388, 446, 731
AvaI	CYCGRG	3 cut(s)	562, 641, 892
AvaII	GGWCC	4 cut(s)	205, 386, 566, 605
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	9 cut(s)	36, 270, 624, 711, 720, 739, 742, 765, 888
BccI	CCATC	2 cut(s)	34, 196
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	883, 917
BcnI	CCSGG	1 cut(s)	793
BcoDI	GTCTC	2 cut(s)	234, 464
BfmI	CTRYAG	3 cut(s)	126, 456, 725
BfoI	RGCGCY	1 cut(s)	633
BglI	GCCNNNNNGGC	1 cut(s)	762
BlpI	GCTNAGC	1 cut(s)	633
Bme1390I	CCNGG	1 cut(s)	793
Bme18I	GGWCC	4 cut(s)	205, 386, 566, 605
BmeT110I	CYCGRG	3 cut(s)	562, 641, 892
BmgBI	CACGTC	1 cut(s)	657
BmgT120I	GGNCC	5 cut(s)	205, 386, 566, 605, 794
BmiI	GGNNCC	7 cut(s)	225, 387, 403, 567, 606, 805, 951
BmrFI	CCNGG	1 cut(s)	793
BoxI	GACNNNNGTC	1 cut(s)	458
BplI	GAGNNNNNCTC	4 cut(s)	332, 364, 890, 922
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	3 cut(s)	170, 359, 515
BpuMI	CCSGG	1 cut(s)	793
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	561, 617
BsaWI	WCCGGW	9 cut(s)	61, 398, 438, 578, 716, 834, 859, 918, 971
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 618
Bse118I	RCCGGY	2 cut(s)	418, 971
Bse1I	ACTGG	1 cut(s)	957
Bse3DI	GCAATG	2 cut(s)	529, 826
BseDI	CCNNGG	2 cut(s)	561, 617
BseGI	GGATG	2 cut(s)	328, 445
BseLI	CCNNNNNNNGG	2 cut(s)	493, 618
BseMI	GCAATG	2 cut(s)	529, 826
BseMII	CTCAG	4 cut(s)	210, 402, 624, 755
BseNI	ACTGG	1 cut(s)	957
BseRI	GAGGAG	4 cut(s)	550, 580, 583, 586
BseXI	GCAGC	9 cut(s)	36, 270, 624, 711, 720, 739, 742, 765, 888
BsgI	GTGCAG	2 cut(s)	772, 887
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	528, 667, 796
BshTI	ACCGGT	1 cut(s)	971
BsiHKCI	CYCGRG	3 cut(s)	562, 641, 892
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	2 cut(s)	493, 618
BsmAI	GTCTC	2 cut(s)	234, 464
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	528, 667, 796
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	3 cut(s)	562, 641, 892
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	9 cut(s)	12, 93, 320, 520, 762, 779, 828, 873, 940
BspANI	GGCC	3 cut(s)	528, 667, 796
BspCNI	CTCAG	4 cut(s)	211, 403, 625, 754
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	7 cut(s)	225, 387, 403, 567, 606, 805, 951
BspMAI	CTGCAG	2 cut(s)	460, 729
BspQI	GCTCTTC	2 cut(s)	14, 252
BspTNI	GGTCTC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	529, 826
BsrFI	RCCGGY	2 cut(s)	418, 971
BsrI	ACTGG	1 cut(s)	957
BssAI	RCCGGY	2 cut(s)	418, 971
BssECI	CCNNGG	2 cut(s)	561, 617
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	6 cut(s)	14, 66, 252, 318, 462, 604
BstAPI	GCANNNNNTGC	3 cut(s)	733, 759, 825
BstC8I	GCNNGC	1 cut(s)	826
BstDEI	CTNAG	4 cut(s)	219, 411, 633, 741
BstDSI	CCRYGG	1 cut(s)	617
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	328, 445
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	632
BstMAI	GTCTC	2 cut(s)	234, 464
BstMWI	GCNNNNNNNGC	8 cut(s)	258, 643, 730, 733, 742, 759, 762, 825
BstPAI	GACNNNNGTC	1 cut(s)	458
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	791
BstSFI	CTRYAG	3 cut(s)	126, 456, 725
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	9 cut(s)	36, 270, 624, 711, 720, 739, 742, 765, 888
BsuRI	GGCC	3 cut(s)	528, 667, 796
BtgI	CCRYGG	1 cut(s)	617
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	328, 445
BtsI	GCAGTG	2 cut(s)	757, 788
BtsIMutI	CAGTG	3 cut(s)	757, 788, 964
Cac8I	GCNNGC	1 cut(s)	826
CaiI	CAGNNNCTG	2 cut(s)	733, 759
CfoI	GCGC	1 cut(s)	632
Cfr10I	RCCGGY	2 cut(s)	418, 971
Cfr13I	GGNCC	5 cut(s)	205, 386, 566, 605, 794
CseI	GACGC	2 cut(s)	16, 251
Csp6I	GTAC	2 cut(s)	838, 1007
CspAI	ACCGGT	1 cut(s)	971
CviAII	CATG	1 cut(s)	197
CviQI	GTAC	2 cut(s)	838, 1007
DdeI	CTNAG	4 cut(s)	219, 411, 633, 741
DraI	TTTAAA	1 cut(s)	978
Eam1104I	CTCTTC	6 cut(s)	14, 66, 252, 318, 462, 604
EarI	CTCTTC	6 cut(s)	14, 66, 252, 318, 462, 604
EciI	GGCGGA	2 cut(s)	335, 955
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	4 cut(s)	205, 386, 566, 605
Eco88I	CYCGRG	3 cut(s)	562, 641, 892
Eco91I	GGTNACC	1 cut(s)	434
EcoO109I	RGGNCCY	2 cut(s)	566, 605
EcoO65I	GGTNACC	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	1 cut(s)	200
FaiI	YATR	3 cut(s)	198, 687, 929
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	979
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	880
FblI	GTMKAC	2 cut(s)	114, 129
FokI	GGATG	2 cut(s)	335, 432
GlaI	GCGC	1 cut(s)	631
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	528, 667, 796
HgaI	GACGC	2 cut(s)	16, 251
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HincII	GTYRAC	2 cut(s)	115, 429
HindII	GTYRAC	2 cut(s)	115, 429
HinfI	GANTC	2 cut(s)	365, 704
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	4 cut(s)	79, 388, 446, 731
Hpy166II	GTNNAC	4 cut(s)	67, 115, 130, 429
Hpy188I	TCNGA	3 cut(s)	220, 661, 771
Hpy188III	TCNNGA	2 cut(s)	31, 892
Hpy8I	GTNNAC	4 cut(s)	67, 115, 130, 429
Hpy99I	CGWCG	6 cut(s)	116, 119, 173, 236, 239, 556
HpyAV	CCTTC	4 cut(s)	379, 579, 618, 940
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	3 cut(s)	159, 514, 656
HpyCH4V	TGCA	6 cut(s)	458, 727, 736, 753, 819, 904
HpyF10VI	GCNNNNNNNGC	8 cut(s)	258, 643, 730, 733, 742, 759, 762, 825
HpyF3I	CTNAG	4 cut(s)	219, 411, 633, 741
HpySE526I	ACGT	3 cut(s)	159, 514, 656
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	630
KspAI	GTTAAC	1 cut(s)	429
LguI	GCTCTTC	2 cut(s)	14, 252
LmnI	GCTCC	3 cut(s)	255, 803, 949
Lsp1109I	GCAGC	9 cut(s)	36, 270, 624, 711, 720, 739, 742, 765, 888
MaeII	ACGT	3 cut(s)	159, 514, 656
MaeIII	GTNAC	8 cut(s)	85, 275, 434, 451, 460, 515, 652, 959
MbiI	CCGCTC	1 cut(s)	95
MboII	GAAGA	8 cut(s)	31, 83, 185, 239, 305, 479, 591, 955
MlyI	GAGTC	2 cut(s)	359, 713
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	428, 977
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	2 cut(s)	733, 985
MspR9I	CCNGG	1 cut(s)	793
MssI	GTTTAAAC	1 cut(s)	978
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	8 cut(s)	258, 643, 730, 733, 742, 759, 762, 825
NciI	CCSGG	1 cut(s)	793
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	7 cut(s)	225, 387, 403, 567, 606, 805, 951
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	7 cut(s)	85, 275, 434, 451, 460, 652, 959
PaeR7I	CTCGAG	2 cut(s)	641, 892
PciSI	GCTCTTC	2 cut(s)	14, 252
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 548, 581
PdmI	GAANNNNTTC	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	618
PinAI	ACCGGT	1 cut(s)	971
PleI	GAGTC	2 cut(s)	359, 712
PmeI	GTTTAAAC	1 cut(s)	978
PpsI	GAGTC	2 cut(s)	359, 712
PpuMI	RGGWCCY	2 cut(s)	566, 605
PshAI	GACNNNNGTC	1 cut(s)	458
Psp5II	RGGWCCY	2 cut(s)	566, 605
PspEI	GGTNACC	1 cut(s)	434
PspN4I	GGNNCC	7 cut(s)	225, 387, 403, 567, 606, 805, 951
PspPI	GGNCC	5 cut(s)	205, 386, 566, 605, 794
PspPPI	RGGWCCY	2 cut(s)	566, 605
PspXI	VCTCGAGB	1 cut(s)	641
PstI	CTGCAG	2 cut(s)	460, 729
PstNI	CAGNNNCTG	2 cut(s)	733, 759
PvuII	CAGCTG	2 cut(s)	733, 985
RsaI	GTAC	2 cut(s)	839, 1008
RsaNI	GTAC	2 cut(s)	838, 1007
RseI	CAYNNNNRTG	1 cut(s)	932
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	14, 252
SaqAI	TTAA	2 cut(s)	428, 977
Sau96I	GGNCC	5 cut(s)	205, 386, 566, 605, 794
SchI	GAGTC	2 cut(s)	359, 713
ScrFI	CCNGG	1 cut(s)	793
SfcI	CTRYAG	3 cut(s)	126, 456, 725
Sfr274I	CTCGAG	2 cut(s)	641, 892
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	4 cut(s)	205, 386, 566, 605
SlaI	CTCGAG	2 cut(s)	641, 892
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	5 cut(s)	185, 338, 530, 641, 892
SmoI	CTYRAG	5 cut(s)	185, 338, 530, 641, 892
SsiI	CCGC	9 cut(s)	12, 93, 320, 520, 762, 779, 828, 873, 940
SspI	AATATT	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	791
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	3 cut(s)	162, 517, 659
TaqI	TCGA	5 cut(s)	114, 584, 642, 893, 908
TauI	GCSGC	2 cut(s)	14, 765
Tru1I	TTAA	2 cut(s)	428, 977
Tru9I	TTAA	2 cut(s)	428, 977
TscAI	CASTG	3 cut(s)	764, 788, 964
TseFI	GTSAC	7 cut(s)	85, 275, 434, 451, 460, 652, 959
TseI	GCWGC	9 cut(s)	24, 258, 637, 724, 727, 730, 733, 753, 901
Tsp45I	GTSAC	7 cut(s)	85, 275, 434, 451, 460, 652, 959
TspGWI	ACGGA	5 cut(s)	100, 197, 252, 389, 479
TspRI	CASTG	3 cut(s)	764, 788, 964
Van91I	CCANNNNNTGG	1 cut(s)	618
VpaK11BI	GGWCC	4 cut(s)	205, 386, 566, 605
XhoI	CTCGAG	2 cut(s)	641, 892
XmiI	GTMKAC	2 cut(s)	114, 129
XmnI	GAANNNNTTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.