Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011801

Physical Location & Seq

Genomic Coordinates Reverse (-)

6691080 .. 6693812

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12220.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTTTACCAAACTCACCACCCCTCCTTTTTATTCCAATTTCATCCTCATTCTTCAACCCCTTCTTCTTCACCCTCTTCTTCTTCTTCATCCGCTGTGACTGCTCTCTCTCCTCCTCTCCCACACTGTCCTCTTCAGGTTGAAAGAAGTGAGATGGAATGCGTTGCGTTGAAGACCAGTATCAGGACGGAGATGGCTGTCAAGGAGGCGGTTTTCGACGACTTGTTGTGGGGTTTGAACGCTCAGAACGGCGGCGTTCAGAATTGTGAGGACTTTTCCGTTGACGACCTTCTCGACTTTTCCAACGACGACGGCTTTGTGGAACAAGAAGAGCAAGAAGACGACAAAAAAGACTCTGTTTTGCCCAAGAAAGAAAGCACGGTGGAGGAAAAGGAAAATTCGACACCGTCTTCTTGTGTCTCTGAGAAAAATGAACTTGGGCCGGAGCCGGCCGAGCCCACAAGTGAACTCACCGTTCCGGCGGACGACTTGGAAAATCTCGAGTGGTTGTCTCATTTCGTGGAGGACTCGTTCTCGGGGTTCAACGCTTCTCTCCCCGCCGGGTTTATGGCCGTGAAACCCGAGAAAAGACCCGAACCGGAGGCTCTCAAGCCATGTTTCAAGACTCCGGTTCCGGCCAAGGCCAGAAGCAAGCGTACCCGGACCGGCGGCCGGGTCTGGTCTCTCGGGTCACCCTCCTTCACCGAGACAAGTTCAAGTTCAAGTTCGTCGTCGTCAACTTCCTCGTGTCCCTCAAGCCCATGGCTCATTTACAACCCCACACAAGGCCTTGGAGGGTTCGGTTCTTCAGTGGAGAAGCCTCAGAAGAAGCCGAAGAGACCGGCAACGACGGAGGGTGGTGGTTCTAGCCAGCCGCCTCGGCGGTGCAGCCACTGCGGAGTTCAGAAGACTCCGCAGTGGAGAACCGGGCCGAATGGAGCCAAGACACTGTGTAACGCCTGCGGGGTGCGTTACAAGTCGGGTCGGCTCGTGCCGGAATACCGACCCGCTTGTAGCCCGACTTTCTCGAGCGAGTTGCACTCCAACCACCACCGCAAGGTGATGGAGATACGCCGCAAGAAGGAGGGCCCGGCAGGCCCCGAGCCCGGTCTGATGACGACAGCAGCAGCGACTCTGGTTGTTCGCAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

385

Amino Acids

41.67

Weight (kDa)

6.1

Isoelectric Point (pI)

68.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	245 - 279	1.6e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51080 AT5G66320 AT5G66320
fragaria_vesca	FvH4_1g12220 FvH4_1g12220
malus_domestica	MD15G1249700.v1.1
prunus_persica	Prupe.7G164500_v2.0.a1
pyrus_communis	pycom02g10750 pycom15g22010
rosa_chinensis	RchiOBHm_Chr2g0100001
rosa_laevigata	RLG00000016929
rosa_multiflora	Rmu_sc0000164.1_g000023
rosa_roxburghii	Rroxscaffold_2G00142640
rosa_rugosa	Rorug02G0084700
rosa_samantha	Rh2AG133700 Rh2BG137300 Rh2CG138800 Rh2DG139100
rosa_wichuraiana	Rw2G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	4 cut(s)	450, 570, 636, 670
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	119, 792
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	6 cut(s)	183, 672, 785, 1057, 1081, 1106
AgsI	TTSAA	8 cut(s)	57, 143, 172, 238, 544, 622, 717, 723
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
Alw26I	GTCTC	5 cut(s)	424, 516, 687, 701, 832
AlwNI	CAGNNNCTG	1 cut(s)	894
Ama87I	CYCGRG	6 cut(s)	500, 535, 581, 686, 1027, 1100
ApaI	GGGCCC	1 cut(s)	1091
ApeKI	GCWGC	3 cut(s)	888, 1124, 1127
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspS9I	GGNCC	6 cut(s)	440, 663, 929, 1087, 1088, 1097
AsuC2I	CCSGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
AsuHPI	GGTGA	6 cut(s)	8, 63, 463, 684, 694, 1072
AvaI	CYCGRG	6 cut(s)	500, 535, 581, 686, 1027, 1100
AvaII	GGWCC	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	1091
BanII	GRGCYC	3 cut(s)	459, 1091, 1107
BarI	GAAGNNNNNNTAC	2 cut(s)	640, 672
BauI	CACGAG	2 cut(s)	745, 989
BbsI	GAAGAC	4 cut(s)	179, 345, 402, 914
BbvI	GCAGC	3 cut(s)	900, 1136, 1139
BccI	CCATC	3 cut(s)	148, 187, 1057
BceAI	ACGGC	3 cut(s)	265, 328, 557
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BcnI	CCSGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
BcoDI	GTCTC	5 cut(s)	424, 516, 687, 701, 832
BfaI	CTAG	1 cut(s)	867
BglI	GCCNNNNNGGC	2 cut(s)	880, 1095
BisI	GCNGC	7 cut(s)	253, 670, 875, 889, 1075, 1125, 1128
BlsI	GCNGC	7 cut(s)	254, 671, 876, 890, 1076, 1126, 1129
Bme1390I	CCNGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
Bme18I	GGWCC	1 cut(s)	663
BmeT110I	CYCGRG	6 cut(s)	500, 535, 581, 686, 1027, 1100
BmgT120I	GGNCC	6 cut(s)	440, 663, 929, 1087, 1088, 1097
BmiI	GGNNCC	5 cut(s)	447, 633, 940, 1089, 1099
BmrFI	CCNGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
BpiI	GAAGAC	4 cut(s)	179, 345, 402, 914
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpuEI	CTTGAG	2 cut(s)	593, 739
BpuMI	CCSGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
BsaI	GGTCTC	2 cut(s)	687, 832
BsaJI	CCNNGG	4 cut(s)	639, 761, 790, 878
BsaWI	WCCGGW	2 cut(s)	598, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 515, 545
Bsc4I	CCNNNNNNNGG	6 cut(s)	183, 672, 785, 1057, 1081, 1106
Bse118I	RCCGGY	3 cut(s)	448, 665, 841
Bse1I	ACTGG	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	639, 761, 790, 878
BseGI	GGATG	2 cut(s)	43, 89
BseLI	CCNNNNNNNGG	6 cut(s)	183, 672, 785, 1057, 1081, 1106
BseMII	CTCAG	3 cut(s)	257, 414, 836
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	102, 105
BseSI	GKGCMC	1 cut(s)	1091
BseX3I	CGGCCG	2 cut(s)	450, 670
BseXI	GCAGC	3 cut(s)	900, 1136, 1139
BsgI	GTGCAG	1 cut(s)	907
Bsh1285I	CGRYCG	2 cut(s)	453, 673
BsiEI	CGRYCG	2 cut(s)	453, 673
BsiHKCI	CYCGRG	6 cut(s)	500, 535, 581, 686, 1027, 1100
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	6 cut(s)	183, 672, 785, 1057, 1081, 1106
BsmAI	GTCTC	5 cut(s)	424, 516, 687, 701, 832
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	164
Bso31I	GGTCTC	2 cut(s)	687, 832
BsoBI	CYCGRG	6 cut(s)	500, 535, 581, 686, 1027, 1100
Bsp120I	GGGCCC	1 cut(s)	1087
Bsp1286I	GDGCHC	3 cut(s)	459, 1091, 1107
Bsp19I	CCATGG	1 cut(s)	761
BspCNI	CTCAG	3 cut(s)	256, 415, 835
BspLI	GGNNCC	5 cut(s)	447, 633, 940, 1089, 1099
BspQI	GCTCTTC	1 cut(s)	324
BspTNI	GGTCTC	2 cut(s)	687, 832
BsrFI	RCCGGY	3 cut(s)	448, 665, 841
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	3 cut(s)	448, 665, 841
BssECI	CCNNGG	4 cut(s)	639, 761, 790, 878
BssSI	CACGAG	2 cut(s)	745, 989
BssT1I	CCWWGG	3 cut(s)	639, 761, 790
Bst2BI	CACGAG	2 cut(s)	745, 989
Bst4CI	ACNGT	5 cut(s)	128, 382, 408, 475, 951
Bst6I	CTCTTC	4 cut(s)	82, 138, 324, 830
BstAPI	GCANNNNNTGC	1 cut(s)	894
BstC8I	GCNNGC	5 cut(s)	450, 653, 872, 961, 1096
BstDEI	CTNAG	3 cut(s)	243, 423, 822
BstDSI	CCRYGG	1 cut(s)	761
BstEII	GGTNACC	1 cut(s)	690
BstF5I	GGATG	2 cut(s)	43, 89
BstMAI	GTCTC	5 cut(s)	424, 516, 687, 701, 832
BstMCI	CGRYCG	2 cut(s)	453, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 454, 880, 894, 1095
BstPI	GGTNACC	1 cut(s)	690
BstSCI	CCNGG	6 cut(s)	560, 659, 672, 926, 1089, 1105
BstSLI	GKGCMC	1 cut(s)	1091
BstV1I	GCAGC	3 cut(s)	900, 1136, 1139
BstV2I	GAAGAC	4 cut(s)	179, 345, 402, 914
BstZI	CGGCCG	2 cut(s)	450, 670
BtgI	CCRYGG	1 cut(s)	761
BtsCI	GGATG	2 cut(s)	43, 89
BtsI	GCAGTG	2 cut(s)	892, 923
BtsIMutI	CAGTG	5 cut(s)	124, 816, 892, 923, 947
Cac8I	GCNNGC	5 cut(s)	450, 653, 872, 961, 1096
CaiI	CAGNNNCTG	1 cut(s)	894
Cfr10I	RCCGGY	3 cut(s)	448, 665, 841
Cfr13I	GGNCC	6 cut(s)	440, 663, 929, 1087, 1088, 1097
CpoI	CGGWCCG	1 cut(s)	663
Csp6I	GTAC	1 cut(s)	657
CspI	CGGWCCG	1 cut(s)	663
CviAII	CATG	2 cut(s)	615, 762
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	3 cut(s)	243, 423, 822
EaeI	YGGCCR	4 cut(s)	450, 570, 636, 670
EagI	CGGCCG	2 cut(s)	450, 670
Eam1104I	CTCTTC	4 cut(s)	82, 138, 324, 830
EarI	CTCTTC	4 cut(s)	82, 138, 324, 830
EciI	GGCGGA	1 cut(s)	497
EclXI	CGGCCG	2 cut(s)	450, 670
Eco130I	CCWWGG	3 cut(s)	639, 761, 790
Eco147I	AGGCCT	1 cut(s)	789
Eco24I	GRGCYC	3 cut(s)	459, 1091, 1107
Eco31I	GGTCTC	2 cut(s)	687, 832
Eco47I	GGWCC	1 cut(s)	663
Eco52I	CGGCCG	2 cut(s)	450, 670
Eco57I	CTGAAG	2 cut(s)	119, 792
Eco88I	CYCGRG	6 cut(s)	500, 535, 581, 686, 1027, 1100
Eco91I	GGTNACC	1 cut(s)	690
EcoO109I	RGGNCCY	2 cut(s)	1087, 1097
EcoO65I	GGTNACC	1 cut(s)	690
EcoT14I	CCWWGG	3 cut(s)	639, 761, 790
EcoT38I	GRGCYC	3 cut(s)	459, 1091, 1107
ErhI	CCWWGG	3 cut(s)	639, 761, 790
FaeI	CATG	2 cut(s)	618, 765
FaiI	YATR	3 cut(s)	569, 616, 763
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	2 cut(s)	614, 761
FauI	CCCGC	3 cut(s)	565, 956, 1015
Fnu4HI	GCNGC	7 cut(s)	253, 670, 875, 889, 1075, 1125, 1128
FokI	GGATG	2 cut(s)	30, 76
FriOI	GRGCYC	3 cut(s)	459, 1091, 1107
Fsp4HI	GCNGC	7 cut(s)	253, 670, 875, 889, 1075, 1125, 1128
FspBI	CTAG	1 cut(s)	867
GluI	GCNGC	7 cut(s)	253, 670, 875, 889, 1075, 1125, 1128
Hin1II	CATG	2 cut(s)	618, 765
HincII	GTYRAC	2 cut(s)	283, 738
HindII	GTYRAC	2 cut(s)	283, 738
HinfI	GANTC	5 cut(s)	353, 527, 625, 910, 1132
HphI	GGTGA	6 cut(s)	8, 63, 463, 684, 694, 1072
Hpy166II	GTNNAC	3 cut(s)	283, 467, 738
Hpy188I	TCNGA	6 cut(s)	246, 261, 424, 825, 906, 1113
Hpy188III	TCNNGA	5 cut(s)	184, 293, 500, 622, 1027
Hpy8I	GTNNAC	3 cut(s)	283, 467, 738
Hpy99I	CGWCG	6 cut(s)	221, 311, 314, 733, 736, 853
HpyAV	CCTTC	4 cut(s)	72, 299, 709, 1075
HpyCH4III	ACNGT	5 cut(s)	128, 382, 408, 475, 951
HpyCH4V	TGCA	2 cut(s)	888, 1039
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 454, 880, 894, 1095
HpyF3I	CTNAG	3 cut(s)	243, 423, 822
Hsp92II	CATG	2 cut(s)	618, 765
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	445, 938
Lsp1109I	GCAGC	3 cut(s)	900, 1136, 1139
MaeI	CTAG	1 cut(s)	867
MaeIII	GTNAC	4 cut(s)	97, 690, 953, 971
MhlI	GDGCHC	3 cut(s)	459, 1091, 1107
MluCI	AATT	3 cut(s)	38, 262, 397
MlyI	GAGTC	5 cut(s)	347, 521, 619, 904, 1126
MmeI	TCCRAC	2 cut(s)	327, 1068
MroNI	GCCGGC	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	5 cut(s)	101, 454, 880, 894, 1095
NaeI	GCCGGC	1 cut(s)	450
NciI	CCSGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
NcoI	CCATGG	1 cut(s)	761
NgoMIV	GCCGGC	1 cut(s)	448
NlaIII	CATG	2 cut(s)	618, 765
NlaIV	GGNNCC	5 cut(s)	447, 633, 940, 1089, 1099
NmeAIII	GCCGAG	2 cut(s)	478, 859
NmuCI	GTSAC	2 cut(s)	97, 690
PaeR7I	CTCGAG	2 cut(s)	500, 1027
PceI	AGGCCT	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	450
PflFI	GACNNNGTC	1 cut(s)	406
PkrI	GCNGC	7 cut(s)	254, 671, 876, 890, 1076, 1126, 1129
PleI	GAGTC	5 cut(s)	347, 521, 619, 904, 1126
PpsI	GAGTC	5 cut(s)	347, 521, 619, 904, 1126
PspEI	GGTNACC	1 cut(s)	690
PspN4I	GGNNCC	5 cut(s)	447, 633, 940, 1089, 1099
PspOMI	GGGCCC	1 cut(s)	1087
PspPI	GGNCC	6 cut(s)	440, 663, 929, 1087, 1088, 1097
PstNI	CAGNNNCTG	1 cut(s)	894
PsyI	GACNNNGTC	1 cut(s)	406
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
Rsr2I	CGGWCCG	1 cut(s)	663
RsrII	CGGWCCG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	324
SatI	GCNGC	7 cut(s)	253, 670, 875, 889, 1075, 1125, 1128
Sau96I	GGNCC	6 cut(s)	440, 663, 929, 1087, 1088, 1097
SchI	GAGTC	5 cut(s)	347, 521, 619, 904, 1126
ScrFI	CCNGG	6 cut(s)	562, 661, 674, 928, 1091, 1107
SduI	GDGCHC	3 cut(s)	459, 1091, 1107
SetI	ASST	3 cut(s)	141, 291, 1062
SfiI	GGCCNNNNNGGCC	1 cut(s)	1095
Sfr274I	CTCGAG	2 cut(s)	500, 1027
SinI	GGWCC	1 cut(s)	663
SlaI	CTCGAG	2 cut(s)	500, 1027
SmlI	CTYRAG	4 cut(s)	500, 608, 754, 1027
SmoI	CTYRAG	4 cut(s)	500, 608, 754, 1027
Sse9I	AATT	3 cut(s)	38, 262, 397
SseBI	AGGCCT	1 cut(s)	789
SspMI	CTAG	1 cut(s)	867
StuI	AGGCCT	1 cut(s)	789
StyD4I	CCNGG	6 cut(s)	560, 659, 672, 926, 1089, 1105
StyI	CCWWGG	3 cut(s)	639, 761, 790
TaaI	ACNGT	5 cut(s)	128, 382, 408, 475, 951
TaqI	TCGA	5 cut(s)	216, 294, 401, 501, 1028
TasI	AATT	3 cut(s)	38, 262, 397
TauI	GCSGC	4 cut(s)	255, 672, 877, 1077
TscAI	CASTG	5 cut(s)	131, 816, 899, 923, 954
TseFI	GTSAC	2 cut(s)	97, 690
TseI	GCWGC	3 cut(s)	888, 1124, 1127
Tsp45I	GTSAC	2 cut(s)	97, 690
TspDTI	ATGAA	3 cut(s)	32, 78, 447
TspGWI	ACGGA	3 cut(s)	203, 268, 866
TspRI	CASTG	5 cut(s)	131, 816, 899, 923, 954
Tth111I	GACNNNGTC	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	1 cut(s)	397
XhoI	CTCGAG	2 cut(s)	500, 1027
XspI	CTAG	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.