Zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2890 |
| Acc36I | ACCTGC | 1 cut(s) | 160 |
| AccB1I | GGYRCC | 1 cut(s) | 3909 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1495 |
| AccII | CGCG | 2 cut(s) | 63, 2441 |
| AclI | AACGTT | 1 cut(s) | 1702 |
| AcoI | YGGCCR | 6 cut(s) | 447, 2269, 2428, 3140, 3144, 3779 |
| AcsI | RAATTY | 3 cut(s) | 1400, 1594, 3860 |
| AcuI | CTGAAG | 7 cut(s) | 737, 1067, 2441, 2877, 3090, 3219, 3412 |
| AcyI | GRCGYC | 1 cut(s) | 2627 |
| AfaI | GTAC | 8 cut(s) | 150, 481, 1242, 1329, 1528, 1975, 2106, 2959 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 934, 1255, 1495, 1807, 3842 |
| AflII | CTTAAG | 1 cut(s) | 1160 |
| AflIII | ACRYGT | 4 cut(s) | 504, 596, 2650, 3335 |
| AjiI | CACGTC | 1 cut(s) | 1030 |
| AjnI | CCWGG | 5 cut(s) | 940, 2157, 2223, 2644, 2680 |
| AleI | CACNNNNGTG | 2 cut(s) | 474, 3119 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 351, 383, 3433, 3465 |
| Alw21I | GWGCWC | 2 cut(s) | 2945, 3459 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1495, 2687, 2896, 3435 |
| Ama87I | CYCGRG | 1 cut(s) | 974 |
| ApaI | GGGCCC | 1 cut(s) | 3285 |
| ApoI | RAATTY | 3 cut(s) | 1400, 1594, 3860 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1999, 2031 |
| AspLEI | GCGC | 5 cut(s) | 1208, 1562, 1674, 2305, 2441 |
| AspS9I | GGNCC | 8 cut(s) | 870, 2015, 2134, 2228, 2921, 3281, 3282, 3449 |
| AsuC2I | CCSGG | 1 cut(s) | 3385 |
| AsuHPI | GGTGA | 3 cut(s) | 1235, 1866, 3228 |
| AsuII | TTCGAA | 1 cut(s) | 439 |
| AvaI | CYCGRG | 1 cut(s) | 974 |
| AvaII | GGWCC | 5 cut(s) | 870, 2015, 2134, 2228, 3449 |
| AxyI | CCTNAGG | 1 cut(s) | 1878 |
| BaeGI | GKGCMC | 3 cut(s) | 265, 3285, 3708 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 996, 1029 |
| BalI | TGGCCA | 2 cut(s) | 2271, 3781 |
| BamHI | GGATCC | 2 cut(s) | 1075, 1936 |
| BanI | GGYRCC | 1 cut(s) | 3909 |
| BanII | GRGCYC | 3 cut(s) | 2855, 3285, 3459 |
| BauI | CACGAG | 1 cut(s) | 3675 |
| BbsI | GAAGAC | 7 cut(s) | 324, 1031, 1300, 1733, 2447, 2865, 2892 |
| Bbv12I | GWGCWC | 2 cut(s) | 2945, 3459 |
| BccI | CCATC | 9 cut(s) | 411, 899, 1313, 1803, 2250, 2579, 2708, 2932, 3840 |
| BceAI | ACGGC | 5 cut(s) | 262, 462, 1682, 1746, 3540 |
| BciT130I | CCWGG | 5 cut(s) | 942, 2159, 2225, 2646, 2682 |
| BciVI | GTATCC | 2 cut(s) | 3374, 3869 |
| BclI | TGATCA | 5 cut(s) | 103, 814, 1624, 2689, 3082 |
| BcnI | CCSGG | 1 cut(s) | 3385 |
| BfaI | CTAG | 7 cut(s) | 753, 1169, 1245, 2265, 2832, 3536, 3618 |
| BfmI | CTRYAG | 2 cut(s) | 1569, 1898 |
| BfoI | RGCGCY | 1 cut(s) | 1209 |
| BfrI | CTTAAG | 1 cut(s) | 1160 |
| BfuAI | ACCTGC | 1 cut(s) | 160 |
| BfuI | GTATCC | 2 cut(s) | 3374, 3869 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 2436, 3152, 3844 |
| BglII | AGATCT | 1 cut(s) | 3187 |
| BlpI | GCTNAGC | 1 cut(s) | 3646 |
| Bme1390I | CCNGG | 6 cut(s) | 942, 2159, 2225, 2646, 2682, 3385 |
| Bme18I | GGWCC | 5 cut(s) | 870, 2015, 2134, 2228, 3449 |
| BmeT110I | CYCGRG | 1 cut(s) | 974 |
| BmgBI | CACGTC | 1 cut(s) | 1030 |
| BmgT120I | GGNCC | 8 cut(s) | 870, 2015, 2134, 2228, 2921, 3281, 3282, 3449 |
| BmiI | GGNNCC | 9 cut(s) | 780, 939, 1077, 1938, 2229, 2643, 3283, 3609, 3911 |
| BmrFI | CCNGG | 6 cut(s) | 942, 2159, 2225, 2646, 2682, 3385 |
| BpiI | GAAGAC | 7 cut(s) | 324, 1031, 1300, 1733, 2447, 2865, 2892 |
| BpmI | CTGGAG | 6 cut(s) | 8, 963, 1880, 2664, 2762, 3021 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3646 |
| Bpu14I | TTCGAA | 1 cut(s) | 439 |
| BpuEI | CTTGAG | 7 cut(s) | 618, 1077, 2595, 2856, 3000, 3111, 3625 |
| BpuMI | CCSGG | 1 cut(s) | 3385 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaAI | YACGTR | 1 cut(s) | 1996 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2260, 3625 |
| BsaHI | GRCGYC | 1 cut(s) | 2627 |
| BsaI | GGTCTC | 2 cut(s) | 354, 3708 |
| BsaJI | CCNNGG | 9 cut(s) | 159, 257, 393, 767, 2223, 2224, 3652, 3796, 3808 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 351, 381 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 934, 1255, 1495, 1807, 3842 |
| Bse118I | RCCGGY | 3 cut(s) | 3142, 3717, 3771 |
| Bse1I | ACTGG | 8 cut(s) | 498, 873, 2170, 2440, 2474, 2484, 2890, 3004 |
| Bse21I | CCTNAGG | 1 cut(s) | 1878 |
| Bse3DI | GCAATG | 2 cut(s) | 3216, 3782 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2260, 3625 |
| BseBI | CCWGG | 5 cut(s) | 942, 2159, 2225, 2646, 2682 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseDI | CCNNGG | 9 cut(s) | 159, 257, 393, 767, 2223, 2224, 3652, 3796, 3808 |
| BseJI | GATNNNNATC | 2 cut(s) | 2260, 3625 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 934, 1255, 1495, 1807, 3842 |
| BseMI | GCAATG | 2 cut(s) | 3216, 3782 |
| BseMII | CTCAG | 7 cut(s) | 1034, 1767, 1869, 3113, 3368, 3544, 3660 |
| BseNI | ACTGG | 8 cut(s) | 498, 873, 2170, 2440, 2474, 2484, 2890, 3004 |
| BseRI | GAGGAG | 5 cut(s) | 962, 1271, 2195, 2485, 2494 |
| BseSI | GKGCMC | 3 cut(s) | 265, 3285, 3708 |
| BseYI | CCCAGC | 3 cut(s) | 167, 954, 2604 |
| BsgI | GTGCAG | 4 cut(s) | 1052, 2081, 2264, 3033 |
| Bsh1236I | CGCG | 2 cut(s) | 63, 2441 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3570 |
| BshNI | GGYRCC | 1 cut(s) | 3909 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsiEI | CGRYCG | 1 cut(s) | 3570 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2945, 3459 |
| BsiHKCI | CYCGRG | 1 cut(s) | 974 |
| BsiSI | CCGG | 7 cut(s) | 38, 382, 2624, 3143, 3384, 3718, 3772 |
| BslFI | GGGAC | 3 cut(s) | 1892, 2241, 2586 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 934, 1255, 1495, 1807, 3842 |
| BsmBI | CGTCTC | 2 cut(s) | 1387, 2418 |
| BsmFI | GGGAC | 3 cut(s) | 1892, 2241, 2586 |
| BsmI | GAATGC | 1 cut(s) | 431 |
| Bso31I | GGTCTC | 2 cut(s) | 354, 3708 |
| BsoBI | CYCGRG | 1 cut(s) | 974 |
| Bsp119I | TTCGAA | 1 cut(s) | 439 |
| Bsp120I | GGGCCC | 1 cut(s) | 3281 |
| Bsp1286I | GDGCHC | 6 cut(s) | 265, 2855, 2945, 3285, 3459, 3708 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3646 |
| Bsp19I | CCATGG | 2 cut(s) | 3796, 3808 |
| Bsp68I | TCGCGA | 1 cut(s) | 63 |
| BspCNI | CTCAG | 7 cut(s) | 1033, 1768, 1870, 3112, 3367, 3543, 3659 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BspFNI | CGCG | 2 cut(s) | 63, 2441 |
| BspHI | TCATGA | 3 cut(s) | 990, 1270, 3634 |
| BspLI | GGNNCC | 9 cut(s) | 780, 939, 1077, 1938, 2229, 2643, 3283, 3609, 3911 |
| BspMAI | CTGCAG | 1 cut(s) | 1902 |
| BspMI | ACCTGC | 1 cut(s) | 160 |
| BspQI | GCTCTTC | 1 cut(s) | 717 |
| BspT104I | TTCGAA | 1 cut(s) | 439 |
| BspT107I | GGYRCC | 1 cut(s) | 3909 |
| BspTI | CTTAAG | 1 cut(s) | 1160 |
| BspTNI | GGTCTC | 2 cut(s) | 354, 3708 |
| BsrDI | GCAATG | 2 cut(s) | 3216, 3782 |
| BsrFI | RCCGGY | 3 cut(s) | 3142, 3717, 3771 |
| BsrI | ACTGG | 8 cut(s) | 498, 873, 2170, 2440, 2474, 2484, 2890, 3004 |
| BssAI | RCCGGY | 3 cut(s) | 3142, 3717, 3771 |
| BssECI | CCNNGG | 9 cut(s) | 159, 257, 393, 767, 2223, 2224, 3652, 3796, 3808 |
| BssNI | GRCGYC | 1 cut(s) | 2627 |
| BssSI | CACGAG | 1 cut(s) | 3675 |
| BssT1I | CCWWGG | 5 cut(s) | 257, 393, 767, 3796, 3808 |
| Bst2BI | CACGAG | 1 cut(s) | 3675 |
| Bst2UI | CCWGG | 5 cut(s) | 942, 2159, 2225, 2646, 2682 |
| Bst6I | CTCTTC | 7 cut(s) | 60, 108, 717, 1086, 1419, 2503, 3238 |
| BstACI | GRCGYC | 1 cut(s) | 2627 |
| BstAFI | CTTAAG | 1 cut(s) | 1160 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 34 |
| BstBAI | YACGTR | 1 cut(s) | 1996 |
| BstBI | TTCGAA | 1 cut(s) | 439 |
| BstC8I | GCNNGC | 8 cut(s) | 35, 1746, 2566, 2709, 3144, 3313, 3686, 3704 |
| BstDSI | CCRYGG | 4 cut(s) | 159, 3652, 3796, 3808 |
| BstEII | GGTNACC | 1 cut(s) | 2717 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 932 |
| BstFNI | CGCG | 2 cut(s) | 63, 2441 |
| BstH2I | RGCGCY | 1 cut(s) | 1209 |
| BstHHI | GCGC | 5 cut(s) | 1208, 1562, 1674, 2305, 2441 |
| BstMCI | CGRYCG | 1 cut(s) | 3570 |
| BstNI | CCWGG | 5 cut(s) | 942, 2159, 2225, 2646, 2682 |
| BstNSI | RCATGY | 7 cut(s) | 486, 508, 519, 600, 2111, 3319, 3339 |
| BstPI | GGTNACC | 1 cut(s) | 2717 |
| BstSCI | CCNGG | 6 cut(s) | 940, 2157, 2223, 2644, 2680, 3383 |
| BstSFI | CTRYAG | 2 cut(s) | 1569, 1898 |
| BstSLI | GKGCMC | 3 cut(s) | 265, 3285, 3708 |
| BstUI | CGCG | 2 cut(s) | 63, 2441 |
| BstV2I | GAAGAC | 7 cut(s) | 324, 1031, 1300, 1733, 2447, 2865, 2892 |
| BstX2I | RGATCY | 6 cut(s) | 1075, 1924, 1936, 2206, 3187, 3695 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 901, 2165 |
| BstYI | RGATCY | 6 cut(s) | 1075, 1924, 1936, 2206, 3187, 3695 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1878 |
| BsuI | GTATCC | 2 cut(s) | 3374, 3869 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| BtgI | CCRYGG | 4 cut(s) | 159, 3652, 3796, 3808 |
| BtrI | CACGTC | 1 cut(s) | 1030 |
| BtsI | GCAGTG | 5 cut(s) | 786, 1739, 2514, 3433, 3728 |
| BtsIMutI | CAGTG | 9 cut(s) | 786, 880, 1739, 2433, 2491, 2514, 3253, 3433, 3728 |
| BtuMI | TCGCGA | 1 cut(s) | 63 |
| BveI | ACCTGC | 1 cut(s) | 160 |
| Cac8I | GCNNGC | 8 cut(s) | 35, 1746, 2566, 2709, 3144, 3313, 3686, 3704 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1495, 2687, 2896, 3435 |
| CciI | TCATGA | 3 cut(s) | 990, 1270, 3634 |
| CfoI | GCGC | 5 cut(s) | 1208, 1562, 1674, 2305, 2441 |
| Cfr10I | RCCGGY | 3 cut(s) | 3142, 3717, 3771 |
| Cfr13I | GGNCC | 8 cut(s) | 870, 2015, 2134, 2228, 2921, 3281, 3282, 3449 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 2616 |
| Csp6I | GTAC | 8 cut(s) | 149, 480, 1241, 1328, 1527, 1974, 2105, 2958 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2973, 3008 |
| CviQI | GTAC | 8 cut(s) | 149, 480, 1241, 1328, 1527, 1974, 2105, 2958 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2890 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2890 |
| EaeI | YGGCCR | 6 cut(s) | 447, 2269, 2428, 3140, 3144, 3779 |
| Eam1104I | CTCTTC | 7 cut(s) | 60, 108, 717, 1086, 1419, 2503, 3238 |
| EarI | CTCTTC | 7 cut(s) | 60, 108, 717, 1086, 1419, 2503, 3238 |
| EciI | GGCGGA | 2 cut(s) | 2894, 3825 |
| Ecl136II | GAGCTC | 1 cut(s) | 3457 |
| Eco130I | CCWWGG | 5 cut(s) | 257, 393, 767, 3796, 3808 |
| Eco147I | AGGCCT | 1 cut(s) | 253 |
| Eco24I | GRGCYC | 3 cut(s) | 2855, 3285, 3459 |
| Eco31I | GGTCTC | 2 cut(s) | 354, 3708 |
| Eco32I | GATATC | 1 cut(s) | 1426 |
| Eco47I | GGWCC | 5 cut(s) | 870, 2015, 2134, 2228, 3449 |
| Eco53kI | GAGCTC | 1 cut(s) | 3457 |
| Eco57I | CTGAAG | 7 cut(s) | 737, 1067, 2441, 2877, 3090, 3219, 3412 |
| Eco81I | CCTNAGG | 1 cut(s) | 1878 |
| Eco88I | CYCGRG | 1 cut(s) | 974 |
| Eco91I | GGTNACC | 1 cut(s) | 2717 |
| EcoICRI | GAGCTC | 1 cut(s) | 3457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 932 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3281 |
| EcoO65I | GGTNACC | 1 cut(s) | 2717 |
| EcoRII | CCWGG | 5 cut(s) | 940, 2157, 2223, 2644, 2680 |
| EcoRV | GATATC | 1 cut(s) | 1426 |
| EcoT14I | CCWWGG | 5 cut(s) | 257, 393, 767, 3796, 3808 |
| EcoT22I | ATGCAT | 2 cut(s) | 1351, 1951 |
| EcoT38I | GRGCYC | 3 cut(s) | 2855, 3285, 3459 |
| ErhI | CCWWGG | 5 cut(s) | 257, 393, 767, 3796, 3808 |
| Esp3I | CGTCTC | 2 cut(s) | 1387, 2418 |
| FaqI | GGGAC | 3 cut(s) | 1892, 2241, 2586 |
| FauI | CCCGC | 2 cut(s) | 2700, 3695 |
| FauNDI | CATATG | 1 cut(s) | 473 |
| FbaI | TGATCA | 5 cut(s) | 103, 814, 1624, 2689, 3082 |
| FriOI | GRGCYC | 3 cut(s) | 2855, 3285, 3459 |
| FseI | GGCCGGCC | 1 cut(s) | 3146 |
| FspBI | CTAG | 7 cut(s) | 753, 1169, 1245, 2265, 2832, 3536, 3618 |
| GlaI | GCGC | 5 cut(s) | 1207, 1561, 1673, 2304, 2440 |
| GsaI | CCCAGC | 3 cut(s) | 171, 958, 2608 |
| GsuI | CTGGAG | 6 cut(s) | 8, 963, 1880, 2664, 2762, 3021 |
| HaeII | RGCGCY | 1 cut(s) | 1209 |
| HapII | CCGG | 7 cut(s) | 38, 382, 2624, 3143, 3384, 3718, 3772 |
| HgaI | GACGC | 1 cut(s) | 2616 |
| HhaI | GCGC | 5 cut(s) | 1208, 1562, 1674, 2305, 2441 |
| Hin1I | GRCGYC | 1 cut(s) | 2627 |
| Hin6I | GCGC | 5 cut(s) | 1206, 1560, 1672, 2303, 2439 |
| HinP1I | GCGC | 5 cut(s) | 1206, 1560, 1672, 2303, 2439 |
| HincII | GTYRAC | 5 cut(s) | 127, 1438, 1717, 2035, 2479 |
| HindII | GTYRAC | 5 cut(s) | 127, 1438, 1717, 2035, 2479 |
| HindIII | AAGCTT | 3 cut(s) | 492, 674, 1163 |
| HpaI | GTTAAC | 3 cut(s) | 127, 2035, 2479 |
| HpaII | CCGG | 7 cut(s) | 38, 382, 2624, 3143, 3384, 3718, 3772 |
| HphI | GGTGA | 3 cut(s) | 1235, 1866, 3228 |
| Hpy99I | CGWCG | 3 cut(s) | 356, 2632, 3167 |
| HpyAV | CCTTC | 7 cut(s) | 307, 712, 766, 861, 928, 1813, 3436 |
| HpyCH4IV | ACGT | 8 cut(s) | 1029, 1396, 1702, 1885, 1995, 2046, 2103, 2652 |
| HpySE526I | ACGT | 8 cut(s) | 1029, 1396, 1702, 1885, 1995, 2046, 2103, 2652 |
| Hsp92I | GRCGYC | 1 cut(s) | 2627 |
| HspAI | GCGC | 5 cut(s) | 1206, 1560, 1672, 2303, 2439 |
| KroI | GCCGGC | 1 cut(s) | 3142 |
| KroNI | GCCGGC | 1 cut(s) | 3144 |
| Ksp22I | TGATCA | 5 cut(s) | 103, 814, 1624, 2689, 3082 |
| KspAI | GTTAAC | 3 cut(s) | 127, 2035, 2479 |
| LguI | GCTCTTC | 1 cut(s) | 717 |
| LmnI | GCTCC | 8 cut(s) | 796, 943, 1834, 1861, 2253, 2940, 3214, 3462 |
| MaeI | CTAG | 7 cut(s) | 753, 1169, 1245, 2265, 2832, 3536, 3618 |
| MaeII | ACGT | 8 cut(s) | 1029, 1396, 1702, 1885, 1995, 2046, 2103, 2652 |
| MfeI | CAATTG | 1 cut(s) | 3066 |
| MflI | RGATCY | 6 cut(s) | 1075, 1924, 1936, 2206, 3187, 3695 |
| MhlI | GDGCHC | 6 cut(s) | 265, 2855, 2945, 3285, 3459, 3708 |
| MlsI | TGGCCA | 2 cut(s) | 2271, 3781 |
| MluNI | TGGCCA | 2 cut(s) | 2271, 3781 |
| MlyI | GAGTC | 7 cut(s) | 812, 1181, 1418, 2330, 2731, 3505, 3632 |
| MmeI | TCCRAC | 2 cut(s) | 882, 2234 |
| Mox20I | TGGCCA | 2 cut(s) | 2271, 3781 |
| Mph1103I | ATGCAT | 2 cut(s) | 1351, 1951 |
| MroNI | GCCGGC | 1 cut(s) | 3142 |
| MscI | TGGCCA | 2 cut(s) | 2271, 3781 |
| MslI | CAYNNNNRTG | 6 cut(s) | 474, 1800, 3119, 3136, 3258, 3801 |
| Msp20I | TGGCCA | 2 cut(s) | 2271, 3781 |
| MspA1I | CMGCKG | 3 cut(s) | 1891, 3080, 3702 |
| MspCI | CTTAAG | 1 cut(s) | 1160 |
| MspI | CCGG | 7 cut(s) | 38, 382, 2624, 3143, 3384, 3718, 3772 |
| MspR9I | CCNGG | 6 cut(s) | 942, 2159, 2225, 2646, 2682, 3385 |
| MunI | CAATTG | 1 cut(s) | 3066 |
| Mva1269I | GAATGC | 1 cut(s) | 431 |
| MvaI | CCWGG | 5 cut(s) | 942, 2159, 2225, 2646, 2682 |
| MvnI | CGCG | 2 cut(s) | 63, 2441 |
| NaeI | GCCGGC | 1 cut(s) | 3144 |
| NciI | CCSGG | 1 cut(s) | 3385 |
| NcoI | CCATGG | 2 cut(s) | 3796, 3808 |
| NdeI | CATATG | 1 cut(s) | 473 |
| NgoMIV | GCCGGC | 1 cut(s) | 3142 |
| NlaIV | GGNNCC | 9 cut(s) | 780, 939, 1077, 1938, 2229, 2643, 3283, 3609, 3911 |
| NmeAIII | GCCGAG | 1 cut(s) | 2403 |
| NmuCI | GTSAC | 7 cut(s) | 804, 1103, 1145, 2512, 2932, 3500, 3737 |
| NruI | TCGCGA | 1 cut(s) | 63 |
| NsiI | ATGCAT | 2 cut(s) | 1351, 1951 |
| NspI | RCATGY | 7 cut(s) | 486, 508, 519, 600, 2111, 3319, 3339 |
| NspV | TTCGAA | 1 cut(s) | 439 |
| OliI | CACNNNNGTG | 2 cut(s) | 474, 3119 |
| PaeR7I | CTCGAG | 1 cut(s) | 974 |
| PagI | TCATGA | 3 cut(s) | 990, 1270, 3634 |
| PasI | CCCWGGG | 1 cut(s) | 2224 |
| PceI | AGGCCT | 1 cut(s) | 253 |
| PciI | ACATGT | 3 cut(s) | 504, 596, 3335 |
| PciSI | GCTCTTC | 1 cut(s) | 717 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1303 |
| PctI | GAATGC | 1 cut(s) | 431 |
| PdiI | GCCGGC | 1 cut(s) | 3144 |
| PfeI | GAWTC | 8 cut(s) | 7, 84, 878, 1467, 1755, 2423, 2803, 3176 |
| PflFI | GACNNNGTC | 1 cut(s) | 3374 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1495 |
| PfoI | TCCNGGA | 4 cut(s) | 940, 2157, 2644, 2680 |
| PleI | GAGTC | 7 cut(s) | 811, 1180, 1417, 2329, 2731, 3505, 3632 |
| PpsI | GAGTC | 7 cut(s) | 811, 1180, 1417, 2329, 2731, 3505, 3632 |
| Ppu21I | YACGTR | 1 cut(s) | 1996 |
| PscI | ACATGT | 3 cut(s) | 504, 596, 3335 |
| Psp124BI | GAGCTC | 1 cut(s) | 3459 |
| Psp1406I | AACGTT | 1 cut(s) | 1702 |
| Psp6I | CCWGG | 5 cut(s) | 940, 2157, 2223, 2644, 2680 |
| PspEI | GGTNACC | 1 cut(s) | 2717 |
| PspFI | CCCAGC | 3 cut(s) | 167, 954, 2604 |
| PspGI | CCWGG | 5 cut(s) | 940, 2157, 2223, 2644, 2680 |
| PspN4I | GGNNCC | 9 cut(s) | 780, 939, 1077, 1938, 2229, 2643, 3283, 3609, 3911 |
| PspOMI | GGGCCC | 1 cut(s) | 3281 |
| PspPI | GGNCC | 8 cut(s) | 870, 2015, 2134, 2228, 2921, 3281, 3282, 3449 |
| PspXI | VCTCGAGB | 1 cut(s) | 974 |
| PstI | CTGCAG | 1 cut(s) | 1902 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1495, 2687, 2896, 3435 |
| PsuI | RGATCY | 6 cut(s) | 1075, 1924, 1936, 2206, 3187, 3695 |
| PsyI | GACNNNGTC | 1 cut(s) | 3374 |
| PvuII | CAGCTG | 1 cut(s) | 3080 |
| RigI | GGCCGGCC | 1 cut(s) | 3146 |
| RruI | TCGCGA | 1 cut(s) | 63 |
| RsaI | GTAC | 8 cut(s) | 150, 481, 1242, 1329, 1528, 1975, 2106, 2959 |
| RsaNI | GTAC | 8 cut(s) | 149, 480, 1241, 1328, 1527, 1974, 2105, 2958 |
| RseI | CAYNNNNRTG | 6 cut(s) | 474, 1800, 3119, 3136, 3258, 3801 |
| SacI | GAGCTC | 1 cut(s) | 3459 |
| SapI | GCTCTTC | 1 cut(s) | 717 |
| Sau96I | GGNCC | 8 cut(s) | 870, 2015, 2134, 2228, 2921, 3281, 3282, 3449 |
| SchI | GAGTC | 7 cut(s) | 812, 1181, 1418, 2330, 2731, 3505, 3632 |
| ScrFI | CCNGG | 6 cut(s) | 942, 2159, 2225, 2646, 2682, 3385 |
| SduI | GDGCHC | 6 cut(s) | 265, 2855, 2945, 3285, 3459, 3708 |
| SfcI | CTRYAG | 2 cut(s) | 1569, 1898 |
| Sfr274I | CTCGAG | 1 cut(s) | 974 |
| SfuI | TTCGAA | 1 cut(s) | 439 |
| SinI | GGWCC | 5 cut(s) | 870, 2015, 2134, 2228, 3449 |
| SlaI | CTCGAG | 1 cut(s) | 974 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 474, 1800, 3119, 3136, 3258, 3801 |
| SmlI | CTYRAG | 9 cut(s) | 633, 974, 1092, 1160, 2610, 2871, 3015, 3126, 3640 |
| SmoI | CTYRAG | 9 cut(s) | 633, 974, 1092, 1160, 2610, 2871, 3015, 3126, 3640 |
| SseBI | AGGCCT | 1 cut(s) | 253 |
| SspI | AATATT | 1 cut(s) | 628 |
| SspMI | CTAG | 7 cut(s) | 753, 1169, 1245, 2265, 2832, 3536, 3618 |
| SstI | GAGCTC | 1 cut(s) | 3459 |
| StuI | AGGCCT | 1 cut(s) | 253 |
| StyD4I | CCNGG | 6 cut(s) | 940, 2157, 2223, 2644, 2680, 3383 |
| StyI | CCWWGG | 5 cut(s) | 257, 393, 767, 3796, 3808 |
| TaiI | ACGT | 8 cut(s) | 1032, 1399, 1705, 1888, 1998, 2049, 2106, 2655 |
| TatI | WGTACW | 2 cut(s) | 1327, 2957 |
| TauI | GCSGC | 4 cut(s) | 307, 1894, 2433, 2879 |
| TfiI | GAWTC | 8 cut(s) | 7, 84, 878, 1467, 1755, 2423, 2803, 3176 |
| TscAI | CASTG | 9 cut(s) | 793, 880, 1746, 2440, 2491, 2521, 3260, 3440, 3728 |
| TseFI | GTSAC | 7 cut(s) | 804, 1103, 1145, 2512, 2932, 3500, 3737 |
| Tsp45I | GTSAC | 7 cut(s) | 804, 1103, 1145, 2512, 2932, 3500, 3737 |
| TspGWI | ACGGA | 4 cut(s) | 64, 1312, 1790, 2240 |
| TspRI | CASTG | 9 cut(s) | 793, 880, 1746, 2440, 2491, 2521, 3260, 3440, 3728 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3374 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1495 |
| Vha464I | CTTAAG | 1 cut(s) | 1160 |
| VpaK11BI | GGWCC | 5 cut(s) | 870, 2015, 2134, 2228, 3449 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 932 |
| XapI | RAATTY | 3 cut(s) | 1400, 1594, 3860 |
| XbaI | TCTAGA | 1 cut(s) | 1168 |
| XceI | RCATGY | 7 cut(s) | 486, 508, 519, 600, 2111, 3319, 3339 |
| XhoI | CTCGAG | 1 cut(s) | 974 |
| XspI | CTAG | 7 cut(s) | 753, 1169, 1245, 2265, 2832, 3536, 3618 |
| Zsp2I | ATGCAT | 2 cut(s) | 1351, 1951 |