zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 197 |
| AarI | CACCTGC | 5 cut(s) | 1735, 1816, 1897, 2221, 3101 |
| AbsI | CCTCGAGG | 1 cut(s) | 3807 |
| Acc36I | ACCTGC | 5 cut(s) | 1735, 1816, 1897, 2221, 3101 |
| AccB1I | GGYRCC | 1 cut(s) | 2854 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2339 |
| AccBSI | CCGCTC | 1 cut(s) | 2588 |
| AccI | GTMKAC | 1 cut(s) | 3440 |
| AccII | CGCG | 1 cut(s) | 84 |
| AciI | CCGC | 6 cut(s) | 412, 1235, 2586, 3325, 3800, 3817 |
| AclWI | GGATC | 8 cut(s) | 110, 938, 950, 963, 1041, 2130, 3112, 3256 |
| AcsI | RAATTY | 8 cut(s) | 452, 492, 662, 924, 1273, 2664, 2798, 3289 |
| AcuI | CTGAAG | 6 cut(s) | 582, 1725, 1806, 2751, 2856, 3357 |
| AflIII | ACRYGT | 4 cut(s) | 323, 937, 3153, 3435 |
| AhlI | ACTAGT | 1 cut(s) | 2114 |
| AjiI | CACGTC | 1 cut(s) | 2306 |
| AjnI | CCWGG | 7 cut(s) | 42, 669, 1185, 1353, 2863, 3256, 3391 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 453, 485, 1553, 1585, 2086, 2118 |
| AleI | CACNNNNGTG | 3 cut(s) | 819, 3269, 3320 |
| Alw26I | GTCTC | 5 cut(s) | 2273, 2337, 2382, 3009, 3669 |
| AlwI | GGATC | 8 cut(s) | 110, 938, 950, 963, 1041, 2130, 3112, 3256 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 886, 1736, 1817, 1898, 2380, 3257 |
| Ama87I | CYCGRG | 2 cut(s) | 3571, 3807 |
| AoxI | GGCC | 4 cut(s) | 3655, 3697, 3797, 3811 |
| ApeKI | GCWGC | 3 cut(s) | 374, 791, 2699 |
| ApoI | RAATTY | 8 cut(s) | 452, 492, 662, 924, 1273, 2664, 2798, 3289 |
| AseI | ATTAAT | 1 cut(s) | 396 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2454, 3216, 3498 |
| AspA2I | CCTAGG | 1 cut(s) | 3464 |
| AspLEI | GCGC | 2 cut(s) | 417, 912 |
| AspS9I | GGNCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| AsuC2I | CCSGG | 4 cut(s) | 2852, 3572, 3573, 3701 |
| AsuHPI | GGTGA | 9 cut(s) | 23, 83, 746, 806, 2483, 2885, 2932, 3125, 3407 |
| AvaI | CYCGRG | 2 cut(s) | 3571, 3807 |
| AvaII | GGWCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| AvrII | CCTAGG | 1 cut(s) | 3464 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1385, 1418 |
| BamHI | GGATCC | 1 cut(s) | 955 |
| BanI | GGYRCC | 1 cut(s) | 2854 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1490, 1522 |
| BbsI | GAAGAC | 4 cut(s) | 981, 1417, 2178, 2376 |
| BbvCI | CCTCAGC | 2 cut(s) | 795, 857 |
| BbvI | GCAGC | 3 cut(s) | 386, 803, 2686 |
| BceAI | ACGGC | 1 cut(s) | 821 |
| BciT130I | CCWGG | 7 cut(s) | 44, 671, 1187, 1355, 2865, 3258, 3393 |
| BclI | TGATCA | 5 cut(s) | 505, 643, 655, 714, 2137 |
| BcnI | CCSGG | 4 cut(s) | 2852, 3572, 3573, 3701 |
| BcoDI | GTCTC | 5 cut(s) | 2273, 2337, 2382, 3009, 3669 |
| BcuI | ACTAGT | 1 cut(s) | 2114 |
| BfaI | CTAG | 7 cut(s) | 498, 2115, 2652, 3027, 3183, 3336, 3465 |
| BfmI | CTRYAG | 5 cut(s) | 1293, 1728, 1809, 1890, 3281 |
| BfuAI | ACCTGC | 5 cut(s) | 1735, 1816, 1897, 2221, 3101 |
| BglII | AGATCT | 2 cut(s) | 648, 2719 |
| BisI | GCNGC | 6 cut(s) | 375, 413, 792, 2586, 2700, 3800 |
| BlnI | CCTAGG | 1 cut(s) | 3464 |
| BlsI | GCNGC | 6 cut(s) | 376, 414, 793, 2587, 2701, 3801 |
| BmcAI | AGTACT | 1 cut(s) | 1508 |
| Bme18I | GGWCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| BmeT110I | CYCGRG | 2 cut(s) | 3571, 3807 |
| BmgBI | CACGTC | 1 cut(s) | 2306 |
| BmgT120I | GGNCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| BmiI | GGNNCC | 6 cut(s) | 547, 957, 1009, 1359, 2856, 3390 |
| BmrI | ACTGGG | 2 cut(s) | 2310, 2565 |
| BmuI | ACTGGG | 2 cut(s) | 2310, 2565 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2529 |
| BpiI | GAAGAC | 4 cut(s) | 981, 1417, 2178, 2376 |
| Bpu10I | CCTNAGC | 2 cut(s) | 795, 857 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BpuMI | CCSGG | 4 cut(s) | 2852, 3572, 3573, 3701 |
| BsaAI | YACGTR | 1 cut(s) | 326 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2738, 2768, 3115, 3145, 3586, 3616 |
| Bse3DI | GCAATG | 2 cut(s) | 759, 2344 |
| BseBI | CCWGG | 7 cut(s) | 44, 671, 1187, 1355, 2865, 3258, 3393 |
| BseMI | GCAATG | 2 cut(s) | 759, 2344 |
| BseMII | CTCAG | 4 cut(s) | 44, 139, 786, 848 |
| BseRI | GAGGAG | 5 cut(s) | 3543, 3612, 3687, 3795, 3798 |
| BseXI | GCAGC | 3 cut(s) | 386, 803, 2686 |
| BseYI | CCCAGC | 2 cut(s) | 2497, 3522 |
| BsgI | GTGCAG | 3 cut(s) | 2175, 2201, 3396 |
| Bsh1236I | CGCG | 1 cut(s) | 84 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1239 |
| BshFI | GGCC | 4 cut(s) | 3657, 3699, 3799, 3813 |
| BshNI | GGYRCC | 1 cut(s) | 2854 |
| BsiEI | CGRYCG | 1 cut(s) | 1239 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3571, 3807 |
| BsiSI | CCGG | 4 cut(s) | 896, 2852, 3572, 3700 |
| BslFI | GGGAC | 8 cut(s) | 559, 993, 2304, 2316, 2537, 2734, 3164, 3446 |
| BsmAI | GTCTC | 5 cut(s) | 2273, 2337, 2382, 3009, 3669 |
| BsmFI | GGGAC | 8 cut(s) | 559, 993, 2304, 2316, 2537, 2734, 3164, 3446 |
| BsmI | GAATGC | 3 cut(s) | 683, 1624, 2986 |
| BsnI | GGCC | 4 cut(s) | 3657, 3699, 3799, 3813 |
| BsoBI | CYCGRG | 2 cut(s) | 3571, 3807 |
| Bsp1407I | TGTACA | 1 cut(s) | 3298 |
| Bsp19I | CCATGG | 1 cut(s) | 3173 |
| Bsp68I | TCGCGA | 1 cut(s) | 84 |
| BspACI | CCGC | 6 cut(s) | 412, 1235, 2586, 3325, 3800, 3817 |
| BspANI | GGCC | 4 cut(s) | 3657, 3699, 3799, 3813 |
| BspCNI | CTCAG | 4 cut(s) | 43, 138, 787, 849 |
| BspFNI | CGCG | 1 cut(s) | 84 |
| BspHI | TCATGA | 2 cut(s) | 457, 3832 |
| BspLI | GGNNCC | 6 cut(s) | 547, 957, 1009, 1359, 2856, 3390 |
| BspMAI | CTGCAG | 4 cut(s) | 1297, 1732, 1813, 1894 |
| BspMI | ACCTGC | 5 cut(s) | 1735, 1816, 1897, 2221, 3101 |
| BspPI | GGATC | 8 cut(s) | 110, 938, 950, 963, 1041, 2130, 3112, 3256 |
| BspT107I | GGYRCC | 1 cut(s) | 2854 |
| BsrBI | CCGCTC | 1 cut(s) | 2588 |
| BsrDI | GCAATG | 2 cut(s) | 759, 2344 |
| BsrGI | TGTACA | 1 cut(s) | 3298 |
| BssT1I | CCWWGG | 6 cut(s) | 1569, 3138, 3173, 3420, 3455, 3464 |
| Bst2UI | CCWGG | 7 cut(s) | 44, 671, 1187, 1355, 2865, 3258, 3393 |
| Bst4CI | ACNGT | 7 cut(s) | 287, 687, 730, 1398, 1511, 1548, 2904 |
| Bst6I | CTCTTC | 2 cut(s) | 1644, 2832 |
| BstAUI | TGTACA | 1 cut(s) | 3298 |
| BstBAI | YACGTR | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 5 cut(s) | 789, 1685, 3520, 3759, 3815 |
| BstDEI | CTNAG | 9 cut(s) | 30, 125, 616, 761, 795, 809, 857, 948, 1874 |
| BstDSI | CCRYGG | 1 cut(s) | 3173 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 197, 2868, 3807 |
| BstFNI | CGCG | 1 cut(s) | 84 |
| BstHHI | GCGC | 2 cut(s) | 417, 912 |
| BstMAI | GTCTC | 5 cut(s) | 2273, 2337, 2382, 3009, 3669 |
| BstMCI | CGRYCG | 1 cut(s) | 1239 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 374, 421, 764, 862, 916, 1978, 2892, 2948, 3331 |
| BstNI | CCWGG | 7 cut(s) | 44, 671, 1187, 1355, 2865, 3258, 3393 |
| BstNSI | RCATGY | 4 cut(s) | 2895, 2946, 3157, 3439 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2529 |
| BstSFI | CTRYAG | 5 cut(s) | 1293, 1728, 1809, 1890, 3281 |
| BstUI | CGCG | 1 cut(s) | 84 |
| BstV1I | GCAGC | 3 cut(s) | 386, 803, 2686 |
| BstV2I | GAAGAC | 4 cut(s) | 981, 1417, 2178, 2376 |
| BstX2I | RGATCY | 5 cut(s) | 648, 955, 1046, 2719, 3117 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1775, 1856 |
| BstYI | RGATCY | 5 cut(s) | 648, 955, 1046, 2719, 3117 |
| BsuRI | GGCC | 4 cut(s) | 3657, 3699, 3799, 3813 |
| BtgI | CCRYGG | 1 cut(s) | 3173 |
| BtgZI | GCGATG | 1 cut(s) | 2930 |
| BtrI | CACGTC | 1 cut(s) | 2306 |
| BtsI | GCAGTG | 2 cut(s) | 1302, 3408 |
| BtsIMutI | CAGTG | 6 cut(s) | 981, 1302, 1362, 1956, 2604, 3408 |
| BtuMI | TCGCGA | 1 cut(s) | 84 |
| BveI | ACCTGC | 5 cut(s) | 1735, 1816, 1897, 2221, 3101 |
| Cac8I | GCNNGC | 5 cut(s) | 789, 1685, 3520, 3759, 3815 |
| CaiI | CAGNNNCTG | 6 cut(s) | 886, 1736, 1817, 1898, 2380, 3257 |
| CciI | TCATGA | 2 cut(s) | 457, 3832 |
| CfoI | GCGC | 2 cut(s) | 417, 912 |
| Cfr13I | GGNCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| Cfr9I | CCCGGG | 1 cut(s) | 3571 |
| DdeI | CTNAG | 9 cut(s) | 30, 125, 616, 761, 795, 809, 857, 948, 1874 |
| Eam1104I | CTCTTC | 2 cut(s) | 1644, 2832 |
| EarI | CTCTTC | 2 cut(s) | 1644, 2832 |
| Eco130I | CCWWGG | 6 cut(s) | 1569, 3138, 3173, 3420, 3455, 3464 |
| Eco47I | GGWCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| Eco57I | CTGAAG | 6 cut(s) | 582, 1725, 1806, 2751, 2856, 3357 |
| Eco88I | CYCGRG | 2 cut(s) | 3571, 3807 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 197, 2868, 3807 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1007, 1357 |
| EcoRI | GAATTC | 2 cut(s) | 662, 3289 |
| EcoRII | CCWGG | 7 cut(s) | 42, 669, 1185, 1353, 2863, 3256, 3391 |
| EcoT14I | CCWWGG | 6 cut(s) | 1569, 3138, 3173, 3420, 3455, 3464 |
| EcoT22I | ATGCAT | 2 cut(s) | 370, 1495 |
| ErhI | CCWWGG | 6 cut(s) | 1569, 3138, 3173, 3420, 3455, 3464 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1060, 1092, 2209, 2241 |
| FaqI | GGGAC | 8 cut(s) | 559, 993, 2304, 2316, 2537, 2734, 3164, 3446 |
| FauI | CCCGC | 1 cut(s) | 3810 |
| FauNDI | CATATG | 2 cut(s) | 370, 2029 |
| FbaI | TGATCA | 5 cut(s) | 505, 643, 655, 714, 2137 |
| FblI | GTMKAC | 1 cut(s) | 3440 |
| Fnu4HI | GCNGC | 6 cut(s) | 375, 413, 792, 2586, 2700, 3800 |
| Fsp4HI | GCNGC | 6 cut(s) | 375, 413, 792, 2586, 2700, 3800 |
| FspBI | CTAG | 7 cut(s) | 498, 2115, 2652, 3027, 3183, 3336, 3465 |
| GlaI | GCGC | 2 cut(s) | 416, 911 |
| GluI | GCNGC | 6 cut(s) | 375, 413, 792, 2586, 2700, 3800 |
| GsaI | CCCAGC | 2 cut(s) | 2501, 3526 |
| HaeIII | GGCC | 4 cut(s) | 3657, 3699, 3799, 3813 |
| HapII | CCGG | 4 cut(s) | 896, 2852, 3572, 3700 |
| HhaI | GCGC | 2 cut(s) | 417, 912 |
| Hin6I | GCGC | 2 cut(s) | 415, 910 |
| HinP1I | GCGC | 2 cut(s) | 415, 910 |
| HincII | GTYRAC | 3 cut(s) | 3070, 3097, 3379 |
| HindII | GTYRAC | 3 cut(s) | 3070, 3097, 3379 |
| HindIII | AAGCTT | 3 cut(s) | 173, 599, 1681 |
| HpaI | GTTAAC | 1 cut(s) | 3379 |
| HpaII | CCGG | 4 cut(s) | 896, 2852, 3572, 3700 |
| HphI | GGTGA | 9 cut(s) | 23, 83, 746, 806, 2483, 2885, 2932, 3125, 3407 |
| HpyCH4III | ACNGT | 7 cut(s) | 287, 687, 730, 1398, 1511, 1548, 2904 |
| HpyCH4IV | ACGT | 6 cut(s) | 325, 844, 904, 939, 2305, 2580 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 374, 421, 764, 862, 916, 1978, 2892, 2948, 3331 |
| HpyF3I | CTNAG | 9 cut(s) | 30, 125, 616, 761, 795, 809, 857, 948, 1874 |
| HpySE526I | ACGT | 6 cut(s) | 325, 844, 904, 939, 2305, 2580 |
| HspAI | GCGC | 2 cut(s) | 415, 910 |
| Ksp22I | TGATCA | 5 cut(s) | 505, 643, 655, 714, 2137 |
| KspAI | GTTAAC | 1 cut(s) | 3379 |
| LmnI | GCTCC | 9 cut(s) | 853, 862, 1716, 1797, 1878, 2593, 3136, 3388, 3857 |
| Lsp1109I | GCAGC | 3 cut(s) | 386, 803, 2686 |
| MaeI | CTAG | 7 cut(s) | 498, 2115, 2652, 3027, 3183, 3336, 3465 |
| MaeII | ACGT | 6 cut(s) | 325, 844, 904, 939, 2305, 2580 |
| MaeIII | GTNAC | 7 cut(s) | 155, 687, 812, 2202, 2464, 2920, 3869 |
| MbiI | CCGCTC | 1 cut(s) | 2588 |
| MfeI | CAATTG | 3 cut(s) | 477, 639, 3383 |
| MflI | RGATCY | 5 cut(s) | 648, 955, 1046, 2719, 3117 |
| MlyI | GAGTC | 9 cut(s) | 884, 1238, 1431, 1466, 1955, 2069, 2519, 2717, 2756 |
| MmeI | TCCRAC | 2 cut(s) | 3536, 3572 |
| Mph1103I | ATGCAT | 2 cut(s) | 370, 1495 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2454, 3216, 3498 |
| MseI | TTAA | 8 cut(s) | 243, 396, 1793, 2553, 2882, 3042, 3351, 3378 |
| MslI | CAYNNNNRTG | 6 cut(s) | 819, 1773, 1854, 3269, 3320, 3837 |
| MspA1I | CMGCKG | 4 cut(s) | 794, 1235, 2611, 3817 |
| MspI | CCGG | 4 cut(s) | 896, 2852, 3572, 3700 |
| MunI | CAATTG | 3 cut(s) | 477, 639, 3383 |
| Mva1269I | GAATGC | 3 cut(s) | 683, 1624, 2986 |
| MvaI | CCWGG | 7 cut(s) | 44, 671, 1187, 1355, 2865, 3258, 3393 |
| MvnI | CGCG | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 374, 421, 764, 862, 916, 1978, 2892, 2948, 3331 |
| NciI | CCSGG | 4 cut(s) | 2852, 3572, 3573, 3701 |
| NcoI | CCATGG | 1 cut(s) | 3173 |
| NdeI | CATATG | 2 cut(s) | 370, 2029 |
| NlaIV | GGNNCC | 6 cut(s) | 547, 957, 1009, 1359, 2856, 3390 |
| NmuCI | GTSAC | 4 cut(s) | 155, 812, 2202, 2920 |
| NruI | TCGCGA | 1 cut(s) | 84 |
| NsiI | ATGCAT | 2 cut(s) | 370, 1495 |
| NspI | RCATGY | 4 cut(s) | 2895, 2946, 3157, 3439 |
| OliI | CACNNNNGTG | 3 cut(s) | 819, 3269, 3320 |
| PaeR7I | CTCGAG | 1 cut(s) | 3807 |
| PagI | TCATGA | 2 cut(s) | 457, 3832 |
| PaqCI | CACCTGC | 5 cut(s) | 1735, 1816, 1897, 2221, 3101 |
| PciI | ACATGT | 2 cut(s) | 3153, 3435 |
| PctI | GAATGC | 3 cut(s) | 683, 1624, 2986 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2454, 3216, 3498 |
| PfeI | GAWTC | 9 cut(s) | 430, 739, 1073, 1241, 1462, 1764, 1845, 1926, 2844 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2339 |
| PkrI | GCNGC | 6 cut(s) | 376, 414, 793, 2587, 2701, 3801 |
| PleI | GAGTC | 9 cut(s) | 884, 1237, 1430, 1466, 1954, 2069, 2519, 2716, 2755 |
| PpsI | GAGTC | 9 cut(s) | 884, 1237, 1430, 1466, 1954, 2069, 2519, 2716, 2755 |
| Ppu21I | YACGTR | 1 cut(s) | 326 |
| PpuMI | RGGWCCY | 2 cut(s) | 1007, 1357 |
| PscI | ACATGT | 2 cut(s) | 3153, 3435 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2529 |
| PshBI | ATTAAT | 1 cut(s) | 396 |
| PsiI | TTATAA | 1 cut(s) | 197 |
| Psp5II | RGGWCCY | 2 cut(s) | 1007, 1357 |
| Psp6I | CCWGG | 7 cut(s) | 42, 669, 1185, 1353, 2863, 3256, 3391 |
| PspFI | CCCAGC | 2 cut(s) | 2497, 3522 |
| PspGI | CCWGG | 7 cut(s) | 42, 669, 1185, 1353, 2863, 3256, 3391 |
| PspN4I | GGNNCC | 6 cut(s) | 547, 957, 1009, 1359, 2856, 3390 |
| PspPI | GGNCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| PspPPI | RGGWCCY | 2 cut(s) | 1007, 1357 |
| PspXI | VCTCGAGB | 1 cut(s) | 3807 |
| PstI | CTGCAG | 4 cut(s) | 1297, 1732, 1813, 1894 |
| PstNI | CAGNNNCTG | 6 cut(s) | 886, 1736, 1817, 1898, 2380, 3257 |
| PsuI | RGATCY | 5 cut(s) | 648, 955, 1046, 2719, 3117 |
| PvuII | CAGCTG | 2 cut(s) | 794, 2611 |
| RruI | TCGCGA | 1 cut(s) | 84 |
| RseI | CAYNNNNRTG | 6 cut(s) | 819, 1773, 1854, 3269, 3320, 3837 |
| SaqAI | TTAA | 8 cut(s) | 243, 396, 1793, 2553, 2882, 3042, 3351, 3378 |
| SatI | GCNGC | 6 cut(s) | 375, 413, 792, 2586, 2700, 3800 |
| Sau96I | GGNCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| ScaI | AGTACT | 1 cut(s) | 1508 |
| SchI | GAGTC | 9 cut(s) | 884, 1238, 1431, 1466, 1955, 2069, 2519, 2717, 2756 |
| SfcI | CTRYAG | 5 cut(s) | 1293, 1728, 1809, 1890, 3281 |
| Sfr274I | CTCGAG | 1 cut(s) | 3807 |
| SinI | GGWCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| SlaI | CTCGAG | 1 cut(s) | 3807 |
| SmaI | CCCGGG | 1 cut(s) | 3573 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 819, 1773, 1854, 3269, 3320, 3837 |
| SmlI | CTYRAG | 2 cut(s) | 425, 3807 |
| SmoI | CTYRAG | 2 cut(s) | 425, 3807 |
| SpeI | ACTAGT | 1 cut(s) | 2114 |
| SsiI | CCGC | 6 cut(s) | 412, 1235, 2586, 3325, 3800, 3817 |
| SspI | AATATT | 3 cut(s) | 223, 394, 1864 |
| SspMI | CTAG | 7 cut(s) | 498, 2115, 2652, 3027, 3183, 3336, 3465 |
| StyI | CCWWGG | 6 cut(s) | 1569, 3138, 3173, 3420, 3455, 3464 |
| TaaI | ACNGT | 7 cut(s) | 287, 687, 730, 1398, 1511, 1548, 2904 |
| TaiI | ACGT | 6 cut(s) | 328, 847, 907, 942, 2308, 2583 |
| TaqI | TCGA | 7 cut(s) | 583, 1239, 1441, 2777, 2888, 3535, 3808 |
| TatI | WGTACW | 6 cut(s) | 60, 1506, 1802, 1883, 3298, 3542 |
| TauI | GCSGC | 3 cut(s) | 415, 2588, 3802 |
| TfiI | GAWTC | 9 cut(s) | 430, 739, 1073, 1241, 1462, 1764, 1845, 1926, 2844 |
| Tru1I | TTAA | 8 cut(s) | 243, 396, 1793, 2553, 2882, 3042, 3351, 3378 |
| Tru9I | TTAA | 8 cut(s) | 243, 396, 1793, 2553, 2882, 3042, 3351, 3378 |
| TscAI | CASTG | 6 cut(s) | 988, 1302, 1369, 1956, 2604, 3415 |
| TseFI | GTSAC | 4 cut(s) | 155, 812, 2202, 2920 |
| TseI | GCWGC | 3 cut(s) | 374, 791, 2699 |
| Tsp45I | GTSAC | 4 cut(s) | 155, 812, 2202, 2920 |
| TspGWI | ACGGA | 5 cut(s) | 1039, 2167, 3027, 3461, 3684 |
| TspMI | CCCGGG | 1 cut(s) | 3571 |
| TspRI | CASTG | 6 cut(s) | 988, 1302, 1369, 1956, 2604, 3415 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2339 |
| VpaK11BI | GGWCC | 6 cut(s) | 546, 1007, 1357, 1379, 3563, 3689 |
| VspI | ATTAAT | 1 cut(s) | 396 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 197, 2868, 3807 |
| XapI | RAATTY | 8 cut(s) | 452, 492, 662, 924, 1273, 2664, 2798, 3289 |
| XceI | RCATGY | 4 cut(s) | 2895, 2946, 3157, 3439 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1022, 1361 |
| XhoI | CTCGAG | 1 cut(s) | 3807 |
| XmaI | CCCGGG | 1 cut(s) | 3571 |
| XmaJI | CCTAGG | 1 cut(s) | 3464 |
| XmiI | GTMKAC | 1 cut(s) | 3440 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2454, 3216, 3498 |
| XspI | CTAG | 7 cut(s) | 498, 2115, 2652, 3027, 3183, 3336, 3465 |
| ZrmI | AGTACT | 1 cut(s) | 1508 |
| Zsp2I | ATGCAT | 2 cut(s) | 370, 1495 |