zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1658 |
| Acc36I | ACCTGC | 1 cut(s) | 1656 |
| Acc65I | GGTACC | 1 cut(s) | 1668 |
| AccB1I | GGYRCC | 1 cut(s) | 1668 |
| AccBSI | CCGCTC | 1 cut(s) | 258 |
| AccI | GTMKAC | 1 cut(s) | 49 |
| AccII | CGCG | 1 cut(s) | 572 |
| AclWI | GGATC | 1 cut(s) | 1112 |
| AcoI | YGGCCR | 1 cut(s) | 248 |
| AcsI | RAATTY | 4 cut(s) | 853, 1214, 1462, 1524 |
| AcuI | CTGAAG | 2 cut(s) | 807, 1005 |
| AdeI | CACNNNGTG | 1 cut(s) | 962 |
| AfaI | GTAC | 5 cut(s) | 538, 562, 588, 1094, 1670 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 257, 522, 1231 |
| AflIII | ACRYGT | 1 cut(s) | 614 |
| AgeI | ACCGGT | 1 cut(s) | 105 |
| AgsI | TTSAA | 8 cut(s) | 146, 712, 733, 830, 1196, 1214, 1472, 1509 |
| AjnI | CCWGG | 1 cut(s) | 1074 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 942, 974, 998, 1030 |
| Alw21I | GWGCWC | 1 cut(s) | 1014 |
| Alw26I | GTCTC | 1 cut(s) | 479 |
| AlwI | GGATC | 1 cut(s) | 1112 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 863 |
| AoxI | GGCC | 4 cut(s) | 138, 244, 248, 405 |
| ApeKI | GCWGC | 5 cut(s) | 289, 512, 693, 794, 1406 |
| ApoI | RAATTY | 4 cut(s) | 853, 1214, 1462, 1524 |
| AseI | ATTAAT | 1 cut(s) | 1428 |
| AsiGI | ACCGGT | 1 cut(s) | 105 |
| Asp718I | GGTACC | 1 cut(s) | 1668 |
| AspLEI | GCGC | 2 cut(s) | 572, 1081 |
| AspS9I | GGNCC | 3 cut(s) | 244, 1072, 1379 |
| AsuC2I | CCSGG | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 5 cut(s) | 292, 974, 1055, 1181, 1547 |
| AvaII | GGWCC | 2 cut(s) | 1072, 1379 |
| AxyI | CCTNAGG | 1 cut(s) | 369 |
| BanI | GGYRCC | 1 cut(s) | 1668 |
| BanII | GRGCYC | 2 cut(s) | 670, 1014 |
| BauI | CACGAG | 1 cut(s) | 341 |
| BbsI | GAAGAC | 4 cut(s) | 63, 312, 993, 1479 |
| Bbv12I | GWGCWC | 1 cut(s) | 1014 |
| BbvI | GCAGC | 5 cut(s) | 301, 499, 705, 781, 1418 |
| BccI | CCATC | 7 cut(s) | 187, 387, 790, 833, 1298, 1324, 1450 |
| BceAI | ACGGC | 2 cut(s) | 291, 346 |
| BciT130I | CCWGG | 1 cut(s) | 1076 |
| BclI | TGATCA | 2 cut(s) | 1315, 1537 |
| BcnI | CCSGG | 1 cut(s) | 178 |
| BcoDI | GTCTC | 1 cut(s) | 479 |
| BfaI | CTAG | 2 cut(s) | 921, 1530 |
| BfmI | CTRYAG | 2 cut(s) | 37, 1663 |
| BfoI | RGCGCY | 1 cut(s) | 1082 |
| BfuAI | ACCTGC | 1 cut(s) | 1656 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 182, 259 |
| BisI | GCNGC | 8 cut(s) | 83, 138, 251, 290, 513, 694, 795, 1407 |
| BlpI | GCTNAGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 8 cut(s) | 84, 139, 252, 291, 514, 695, 796, 1408 |
| Bme1390I | CCNGG | 2 cut(s) | 178, 1076 |
| Bme18I | GGWCC | 2 cut(s) | 1072, 1379 |
| BmgT120I | GGNCC | 3 cut(s) | 244, 1072, 1379 |
| BmiI | GGNNCC | 2 cut(s) | 245, 1670 |
| BmrFI | CCNGG | 2 cut(s) | 178, 1076 |
| BmrI | ACTGGG | 1 cut(s) | 39 |
| BmsI | GCATC | 7 cut(s) | 102, 271, 353, 399, 963, 1010, 1387 |
| BmuI | ACTGGG | 1 cut(s) | 39 |
| BpiI | GAAGAC | 4 cut(s) | 63, 312, 993, 1479 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 4 cut(s) | 29, 654, 961, 1109 |
| BpuMI | CCSGG | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 2 cut(s) | 177, 1242 |
| BsaWI | WCCGGW | 2 cut(s) | 88, 105 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 83, 113, 1582, 1612 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 257, 522, 1231 |
| Bse118I | RCCGGY | 3 cut(s) | 105, 115, 246 |
| Bse1I | ACTGG | 2 cut(s) | 45, 725 |
| Bse21I | CCTNAGG | 1 cut(s) | 369 |
| BseBI | CCWGG | 1 cut(s) | 1076 |
| BseDI | CCNNGG | 2 cut(s) | 177, 1242 |
| BseGI | GGATG | 6 cut(s) | 262, 368, 379, 406, 563, 978 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 257, 522, 1231 |
| BseMII | CTCAG | 2 cut(s) | 32, 1076 |
| BseNI | ACTGG | 2 cut(s) | 45, 725 |
| BseRI | GAGGAG | 3 cut(s) | 84, 87, 224 |
| BseX3I | CGGCCG | 1 cut(s) | 248 |
| BseXI | GCAGC | 5 cut(s) | 301, 499, 705, 781, 1418 |
| BseYI | CCCAGC | 1 cut(s) | 696 |
| BsgI | GTGCAG | 1 cut(s) | 897 |
| Bsh1236I | CGCG | 1 cut(s) | 572 |
| Bsh1285I | CGRYCG | 3 cut(s) | 110, 159, 251 |
| BshFI | GGCC | 4 cut(s) | 140, 246, 250, 407 |
| BshNI | GGYRCC | 1 cut(s) | 1668 |
| BshTI | ACCGGT | 1 cut(s) | 105 |
| BsiEI | CGRYCG | 3 cut(s) | 110, 159, 251 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1014 |
| BsiSI | CCGG | 5 cut(s) | 89, 106, 116, 177, 247 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 257, 522, 1231 |
| BsmAI | GTCTC | 1 cut(s) | 479 |
| BsnI | GGCC | 4 cut(s) | 140, 246, 250, 407 |
| Bsp1286I | GDGCHC | 2 cut(s) | 670, 1014 |
| Bsp1407I | TGTACA | 1 cut(s) | 536 |
| Bsp143I | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 18 |
| BspANI | GGCC | 4 cut(s) | 140, 246, 250, 407 |
| BspCNI | CTCAG | 2 cut(s) | 31, 1075 |
| BspFNI | CGCG | 1 cut(s) | 572 |
| BspLI | GGNNCC | 2 cut(s) | 245, 1670 |
| BspMAI | CTGCAG | 1 cut(s) | 1667 |
| BspMI | ACCTGC | 1 cut(s) | 1656 |
| BspPI | GGATC | 1 cut(s) | 1112 |
| BspT107I | GGYRCC | 1 cut(s) | 1668 |
| BsrBI | CCGCTC | 1 cut(s) | 258 |
| BsrFI | RCCGGY | 3 cut(s) | 105, 115, 246 |
| BsrGI | TGTACA | 1 cut(s) | 536 |
| BsrI | ACTGG | 2 cut(s) | 45, 725 |
| BssAI | RCCGGY | 3 cut(s) | 105, 115, 246 |
| BssECI | CCNNGG | 2 cut(s) | 177, 1242 |
| BssMI | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| BssNAI | GTATAC | 1 cut(s) | 50 |
| BssSI | CACGAG | 1 cut(s) | 341 |
| BssT1I | CCWWGG | 1 cut(s) | 1242 |
| Bst1107I | GTATAC | 1 cut(s) | 50 |
| Bst2BI | CACGAG | 1 cut(s) | 341 |
| Bst2UI | CCWGG | 1 cut(s) | 1076 |
| Bst4CI | ACNGT | 3 cut(s) | 744, 872, 994 |
| Bst6I | CTCTTC | 1 cut(s) | 713 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 363 |
| BstAUI | TGTACA | 1 cut(s) | 536 |
| BstC8I | GCNNGC | 6 cut(s) | 15, 24, 117, 248, 260, 1288 |
| BstDEI | CTNAG | 3 cut(s) | 18, 369, 1062 |
| BstEII | GGTNACC | 1 cut(s) | 1187 |
| BstF5I | GGATG | 6 cut(s) | 262, 368, 379, 406, 563, 978 |
| BstFNI | CGCG | 1 cut(s) | 572 |
| BstH2I | RGCGCY | 1 cut(s) | 1082 |
| BstHHI | GCGC | 2 cut(s) | 572, 1081 |
| BstKTI | GATC | 5 cut(s) | 159, 355, 1120, 1318, 1540 |
| BstMAI | GTCTC | 1 cut(s) | 479 |
| BstMBI | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| BstMCI | CGRYCG | 3 cut(s) | 110, 159, 251 |
| BstNI | CCWGG | 1 cut(s) | 1076 |
| BstNSI | RCATGY | 1 cut(s) | 618 |
| BstPI | GGTNACC | 1 cut(s) | 1187 |
| BstSCI | CCNGG | 2 cut(s) | 176, 1074 |
| BstSFI | CTRYAG | 2 cut(s) | 37, 1663 |
| BstUI | CGCG | 1 cut(s) | 572 |
| BstV1I | GCAGC | 5 cut(s) | 301, 499, 705, 781, 1418 |
| BstV2I | GAAGAC | 4 cut(s) | 63, 312, 993, 1479 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1294 |
| BstZ17I | GTATAC | 1 cut(s) | 50 |
| BstZI | CGGCCG | 1 cut(s) | 248 |
| Bsu36I | CCTNAGG | 1 cut(s) | 369 |
| BsuRI | GGCC | 4 cut(s) | 140, 246, 250, 407 |
| BtsCI | GGATG | 6 cut(s) | 262, 368, 379, 406, 563, 978 |
| BtsI | GCAGTG | 1 cut(s) | 1593 |
| BtsIMutI | CAGTG | 2 cut(s) | 1382, 1593 |
| BveI | ACCTGC | 1 cut(s) | 1656 |
| Cac8I | GCNNGC | 6 cut(s) | 15, 24, 117, 248, 260, 1288 |
| CaiI | CAGNNNCTG | 1 cut(s) | 863 |
| CfoI | GCGC | 2 cut(s) | 572, 1081 |
| Cfr10I | RCCGGY | 3 cut(s) | 105, 115, 246 |
| Cfr13I | GGNCC | 3 cut(s) | 244, 1072, 1379 |
| CseI | GACGC | 1 cut(s) | 1433 |
| Csp6I | GTAC | 5 cut(s) | 537, 561, 587, 1093, 1669 |
| CspAI | ACCGGT | 1 cut(s) | 105 |
| CviAII | CATG | 3 cut(s) | 615, 1327, 1632 |
| CviQI | GTAC | 5 cut(s) | 537, 561, 587, 1093, 1669 |
| DdeI | CTNAG | 3 cut(s) | 18, 369, 1062 |
| DpnI | GATC | 5 cut(s) | 158, 354, 1119, 1317, 1539 |
| DpnII | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| DraI | TTTAAA | 1 cut(s) | 415 |
| DraIII | CACNNNGTG | 1 cut(s) | 962 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1658 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1658 |
| EaeI | YGGCCR | 1 cut(s) | 248 |
| EagI | CGGCCG | 1 cut(s) | 248 |
| Eam1104I | CTCTTC | 1 cut(s) | 713 |
| EarI | CTCTTC | 1 cut(s) | 713 |
| EciI | GGCGGA | 3 cut(s) | 19, 81, 348 |
| Ecl136II | GAGCTC | 1 cut(s) | 1012 |
| EclXI | CGGCCG | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 1 cut(s) | 1242 |
| Eco147I | AGGCCT | 1 cut(s) | 407 |
| Eco24I | GRGCYC | 2 cut(s) | 670, 1014 |
| Eco47I | GGWCC | 2 cut(s) | 1072, 1379 |
| Eco52I | CGGCCG | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 1012 |
| Eco57I | CTGAAG | 2 cut(s) | 807, 1005 |
| Eco81I | CCTNAGG | 1 cut(s) | 369 |
| Eco91I | GGTNACC | 1 cut(s) | 1187 |
| EcoICRI | GAGCTC | 1 cut(s) | 1012 |
| EcoO65I | GGTNACC | 1 cut(s) | 1187 |
| EcoRI | GAATTC | 1 cut(s) | 1524 |
| EcoRII | CCWGG | 1 cut(s) | 1074 |
| EcoT14I | CCWWGG | 1 cut(s) | 1242 |
| EcoT22I | ATGCAT | 1 cut(s) | 1402 |
| EcoT38I | GRGCYC | 2 cut(s) | 670, 1014 |
| ErhI | CCWWGG | 1 cut(s) | 1242 |
| FaeI | CATG | 3 cut(s) | 618, 1330, 1635 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 998, 1030 |
| FatI | CATG | 3 cut(s) | 614, 1326, 1631 |
| FauI | CCCGC | 7 cut(s) | 112, 155, 178, 208, 234, 251, 390 |
| FauNDI | CATATG | 1 cut(s) | 1032 |
| FbaI | TGATCA | 2 cut(s) | 1315, 1537 |
| FblI | GTMKAC | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 8 cut(s) | 83, 138, 251, 290, 513, 694, 795, 1407 |
| FokI | GGATG | 6 cut(s) | 249, 366, 375, 413, 570, 985 |
| FriOI | GRGCYC | 2 cut(s) | 670, 1014 |
| FseI | GGCCGGCC | 1 cut(s) | 250 |
| Fsp4HI | GCNGC | 8 cut(s) | 83, 138, 251, 290, 513, 694, 795, 1407 |
| FspBI | CTAG | 2 cut(s) | 921, 1530 |
| GlaI | GCGC | 2 cut(s) | 571, 1080 |
| GluI | GCNGC | 8 cut(s) | 83, 138, 251, 290, 513, 694, 795, 1407 |
| GsaI | CCCAGC | 1 cut(s) | 700 |
| HaeII | RGCGCY | 1 cut(s) | 1082 |
| HaeIII | GGCC | 4 cut(s) | 140, 246, 250, 407 |
| HapII | CCGG | 5 cut(s) | 89, 106, 116, 177, 247 |
| HgaI | GACGC | 1 cut(s) | 1433 |
| HhaI | GCGC | 2 cut(s) | 572, 1081 |
| Hin1II | CATG | 3 cut(s) | 618, 1330, 1635 |
| Hin6I | GCGC | 2 cut(s) | 570, 1079 |
| HinP1I | GCGC | 2 cut(s) | 570, 1079 |
| HincII | GTYRAC | 3 cut(s) | 457, 750, 868 |
| HindII | GTYRAC | 3 cut(s) | 457, 750, 868 |
| HindIII | AAGCTT | 1 cut(s) | 1205 |
| HinfI | GANTC | 3 cut(s) | 724, 818, 1148 |
| HpaI | GTTAAC | 2 cut(s) | 457, 750 |
| HpaII | CCGG | 5 cut(s) | 89, 106, 116, 177, 247 |
| HphI | GGTGA | 5 cut(s) | 292, 974, 1055, 1181, 1547 |
| Hpy166II | GTNNAC | 7 cut(s) | 50, 457, 587, 718, 750, 868, 1420 |
| Hpy188I | TCNGA | 4 cut(s) | 267, 507, 931, 1434 |
| Hpy188III | TCNNGA | 3 cut(s) | 1115, 1211, 1394 |
| Hpy8I | GTNNAC | 7 cut(s) | 50, 457, 587, 718, 750, 868, 1420 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 1449 |
| HpyAV | CCTTC | 9 cut(s) | 43, 88, 163, 393, 418, 502, 656, 1000, 1489 |
| HpyCH4III | ACNGT | 3 cut(s) | 744, 872, 994 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 369, 1062 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92II | CATG | 3 cut(s) | 618, 1330, 1635 |
| HspAI | GCGC | 2 cut(s) | 570, 1079 |
| KpnI | GGTACC | 1 cut(s) | 1672 |
| KroI | GCCGGC | 2 cut(s) | 115, 246 |
| KroNI | GCCGGC | 2 cut(s) | 117, 248 |
| Ksp22I | TGATCA | 2 cut(s) | 1315, 1537 |
| KspAI | GTTAAC | 2 cut(s) | 457, 750 |
| Kzo9I | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| LmnI | GCTCC | 3 cut(s) | 4, 1009, 1603 |
| Lsp1109I | GCAGC | 5 cut(s) | 301, 499, 705, 781, 1418 |
| LweI | GCATC | 7 cut(s) | 102, 271, 353, 399, 963, 1010, 1387 |
| MaeI | CTAG | 2 cut(s) | 921, 1530 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 3 cut(s) | 1187, 1448, 1583 |
| MalI | GATC | 5 cut(s) | 158, 354, 1119, 1317, 1539 |
| MbiI | CCGCTC | 1 cut(s) | 258 |
| MboI | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| MboII | GAAGA | 9 cut(s) | 68, 311, 314, 317, 700, 813, 998, 1103, 1484 |
| MfeI | CAATTG | 1 cut(s) | 1509 |
| MhlI | GDGCHC | 2 cut(s) | 670, 1014 |
| MmeI | TCCRAC | 2 cut(s) | 924, 1625 |
| Mph1103I | ATGCAT | 1 cut(s) | 1402 |
| MroNI | GCCGGC | 2 cut(s) | 115, 246 |
| MseI | TTAA | 7 cut(s) | 414, 456, 749, 768, 1202, 1275, 1428 |
| MspA1I | CMGCKG | 1 cut(s) | 696 |
| MspI | CCGG | 5 cut(s) | 89, 106, 116, 177, 247 |
| MspR9I | CCNGG | 2 cut(s) | 178, 1076 |
| MunI | CAATTG | 1 cut(s) | 1509 |
| MvaI | CCWGG | 1 cut(s) | 1076 |
| MvnI | CGCG | 1 cut(s) | 572 |
| NaeI | GCCGGC | 2 cut(s) | 117, 248 |
| NciI | CCSGG | 1 cut(s) | 178 |
| NdeI | CATATG | 1 cut(s) | 1032 |
| NdeII | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| NgoMIV | GCCGGC | 2 cut(s) | 115, 246 |
| NlaIII | CATG | 3 cut(s) | 618, 1330, 1635 |
| NlaIV | GGNNCC | 2 cut(s) | 245, 1670 |
| NmeAIII | GCCGAG | 1 cut(s) | 279 |
| NmuCI | GTSAC | 1 cut(s) | 1187 |
| NsiI | ATGCAT | 1 cut(s) | 1402 |
| NspI | RCATGY | 1 cut(s) | 618 |
| PceI | AGGCCT | 1 cut(s) | 407 |
| PciI | ACATGT | 1 cut(s) | 614 |
| PdiI | GCCGGC | 2 cut(s) | 117, 248 |
| PfeI | GAWTC | 3 cut(s) | 724, 818, 1148 |
| PinAI | ACCGGT | 1 cut(s) | 105 |
| PkrI | GCNGC | 8 cut(s) | 84, 139, 252, 291, 514, 695, 796, 1408 |
| Ple19I | CGATCG | 1 cut(s) | 159 |
| PscI | ACATGT | 1 cut(s) | 614 |
| PshBI | ATTAAT | 1 cut(s) | 1428 |
| Psp124BI | GAGCTC | 1 cut(s) | 1014 |
| Psp6I | CCWGG | 1 cut(s) | 1074 |
| PspEI | GGTNACC | 1 cut(s) | 1187 |
| PspFI | CCCAGC | 1 cut(s) | 696 |
| PspGI | CCWGG | 1 cut(s) | 1074 |
| PspN4I | GGNNCC | 2 cut(s) | 245, 1670 |
| PspPI | GGNCC | 3 cut(s) | 244, 1072, 1379 |
| PstI | CTGCAG | 1 cut(s) | 1667 |
| PstNI | CAGNNNCTG | 1 cut(s) | 863 |
| PvuI | CGATCG | 1 cut(s) | 159 |
| PvuII | CAGCTG | 1 cut(s) | 696 |
| RigI | GGCCGGCC | 1 cut(s) | 250 |
| RsaI | GTAC | 5 cut(s) | 538, 562, 588, 1094, 1670 |
| RsaNI | GTAC | 5 cut(s) | 537, 561, 587, 1093, 1669 |
| SacI | GAGCTC | 1 cut(s) | 1014 |
| SaqAI | TTAA | 7 cut(s) | 414, 456, 749, 768, 1202, 1275, 1428 |
| SatI | GCNGC | 8 cut(s) | 83, 138, 251, 290, 513, 694, 795, 1407 |
| Sau3AI | GATC | 5 cut(s) | 156, 352, 1117, 1315, 1537 |
| Sau96I | GGNCC | 3 cut(s) | 244, 1072, 1379 |
| ScrFI | CCNGG | 2 cut(s) | 178, 1076 |
| SduI | GDGCHC | 2 cut(s) | 670, 1014 |
| SfaNI | GCATC | 7 cut(s) | 102, 271, 353, 399, 963, 1010, 1387 |
| SfcI | CTRYAG | 2 cut(s) | 37, 1663 |
| SinI | GGWCC | 2 cut(s) | 1072, 1379 |
| SmlI | CTYRAG | 4 cut(s) | 8, 669, 940, 1088 |
| SmoI | CTYRAG | 4 cut(s) | 8, 669, 940, 1088 |
| SseBI | AGGCCT | 1 cut(s) | 407 |
| SspI | AATATT | 2 cut(s) | 1255, 1639 |
| SspMI | CTAG | 2 cut(s) | 921, 1530 |
| SstI | GAGCTC | 1 cut(s) | 1014 |
| StuI | AGGCCT | 1 cut(s) | 407 |
| StyD4I | CCNGG | 2 cut(s) | 176, 1074 |
| StyI | CCWWGG | 1 cut(s) | 1242 |
| TaaI | ACNGT | 3 cut(s) | 744, 872, 994 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 5 cut(s) | 110, 419, 1004, 1151, 1454 |
| TatI | WGTACW | 3 cut(s) | 536, 560, 1092 |
| TauI | GCSGC | 3 cut(s) | 85, 140, 253 |
| TfiI | GAWTC | 3 cut(s) | 724, 818, 1148 |
| Tru1I | TTAA | 7 cut(s) | 414, 456, 749, 768, 1202, 1275, 1428 |
| Tru9I | TTAA | 7 cut(s) | 414, 456, 749, 768, 1202, 1275, 1428 |
| TscAI | CASTG | 2 cut(s) | 1389, 1600 |
| TseFI | GTSAC | 1 cut(s) | 1187 |
| TseI | GCWGC | 5 cut(s) | 289, 512, 693, 794, 1406 |
| Tsp45I | GTSAC | 1 cut(s) | 1187 |
| TspDTI | ATGAA | 3 cut(s) | 307, 454, 804 |
| TspGWI | ACGGA | 1 cut(s) | 75 |
| TspRI | CASTG | 2 cut(s) | 1389, 1600 |
| VpaK11BI | GGWCC | 2 cut(s) | 1072, 1379 |
| VspI | ATTAAT | 1 cut(s) | 1428 |
| XapI | RAATTY | 4 cut(s) | 853, 1214, 1462, 1524 |
| XceI | RCATGY | 1 cut(s) | 618 |
| XmiI | GTMKAC | 1 cut(s) | 49 |
| XspI | CTAG | 2 cut(s) | 921, 1530 |
| Zsp2I | ATGCAT | 1 cut(s) | 1402 |