zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1163 |
| AarI | CACCTGC | 4 cut(s) | 2629, 2710, 3115, 3995 |
| AatII | GACGTC | 1 cut(s) | 911 |
| AbsI | CCTCGAGG | 1 cut(s) | 4707 |
| Acc16I | TGCGCA | 1 cut(s) | 1826 |
| Acc36I | ACCTGC | 4 cut(s) | 2629, 2710, 3115, 3995 |
| AccB1I | GGYRCC | 2 cut(s) | 123, 3748 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3233 |
| AccBSI | CCGCTC | 1 cut(s) | 55 |
| AccI | GTMKAC | 2 cut(s) | 24, 4340 |
| AccII | CGCG | 6 cut(s) | 50, 66, 68, 83, 169, 1050 |
| AclWI | GGATC | 9 cut(s) | 880, 1076, 1853, 1865, 1878, 1938, 3024, 4012, 4156 |
| AcoI | YGGCCR | 1 cut(s) | 248 |
| AcuI | CTGAAG | 8 cut(s) | 939, 1548, 1908, 2619, 2700, 2781, 3645, 3750 |
| AcyI | GRCGYC | 3 cut(s) | 124, 281, 908 |
| AflIII | ACRYGT | 5 cut(s) | 575, 1289, 3785, 4053, 4335 |
| AjiI | CACGTC | 2 cut(s) | 193, 3839 |
| AjnI | CCWGG | 7 cut(s) | 1008, 1635, 2079, 2247, 3757, 4156, 4291 |
| AleI | CACNNNNGTG | 2 cut(s) | 4169, 4220 |
| Alw21I | GWGCWC | 2 cut(s) | 48, 948 |
| Alw26I | GTCTC | 7 cut(s) | 262, 3167, 3231, 3276, 3903, 4425, 4569 |
| AlwI | GGATC | 9 cut(s) | 880, 1076, 1853, 1865, 1878, 1938, 3024, 4012, 4156 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1801, 2630, 2711, 2792, 3274, 4157 |
| Ama87I | CYCGRG | 3 cut(s) | 3012, 4471, 4707 |
| AoxI | GGCC | 7 cut(s) | 248, 408, 426, 471, 4555, 4697, 4711 |
| ApeKI | GCWGC | 9 cut(s) | 58, 459, 462, 654, 755, 758, 1340, 1757, 3593 |
| AseI | ATTAAT | 1 cut(s) | 1362 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 3348, 4116, 4270, 4398 |
| AspA2I | CCTAGG | 1 cut(s) | 4364 |
| AspLEI | GCGC | 6 cut(s) | 68, 83, 126, 169, 1383, 1827 |
| AspS9I | GGNCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| AsuC2I | CCSGG | 4 cut(s) | 255, 3746, 4472, 4473 |
| AvaI | CYCGRG | 3 cut(s) | 3012, 4471, 4707 |
| AvaII | GGWCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| AvrII | CCTAGG | 1 cut(s) | 4364 |
| AxyI | CCTNAGG | 1 cut(s) | 372 |
| BaeGI | GKGCMC | 1 cut(s) | 3838 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2279, 2312 |
| BamHI | GGATCC | 1 cut(s) | 1870 |
| BanI | GGYRCC | 2 cut(s) | 123, 3748 |
| BanII | GRGCYC | 1 cut(s) | 948 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2384, 2416 |
| BbsI | GAAGAC | 4 cut(s) | 1896, 2311, 3072, 3270 |
| Bbv12I | GWGCWC | 2 cut(s) | 48, 948 |
| BbvCI | CCTCAGC | 1 cut(s) | 1772 |
| BbvI | GCAGC | 9 cut(s) | 70, 449, 471, 666, 742, 745, 1352, 1769, 3580 |
| BceAI | ACGGC | 2 cut(s) | 94, 268 |
| BciT130I | CCWGG | 7 cut(s) | 1010, 1637, 2081, 2249, 3759, 4158, 4293 |
| BciVI | GTATCC | 2 cut(s) | 678, 994 |
| BclI | TGATCA | 5 cut(s) | 1471, 1609, 1621, 1680, 3964 |
| BcnI | CCSGG | 4 cut(s) | 255, 3746, 4472, 4473 |
| BcoDI | GTCTC | 7 cut(s) | 262, 3167, 3231, 3276, 3903, 4425, 4569 |
| BfaI | CTAG | 8 cut(s) | 888, 1464, 3546, 3921, 4059, 4083, 4236, 4365 |
| BfmI | CTRYAG | 6 cut(s) | 2187, 2622, 2703, 2784, 4181, 4344 |
| BfoI | RGCGCY | 1 cut(s) | 127 |
| BfuAI | ACCTGC | 4 cut(s) | 2629, 2710, 3115, 3995 |
| BfuI | GTATCC | 2 cut(s) | 678, 994 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 259 |
| BglII | AGATCT | 2 cut(s) | 1614, 3613 |
| BlnI | CCTAGG | 1 cut(s) | 4364 |
| BmcAI | AGTACT | 1 cut(s) | 2402 |
| Bme18I | GGWCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| BmeT110I | CYCGRG | 3 cut(s) | 3012, 4471, 4707 |
| BmgBI | CACGTC | 2 cut(s) | 193, 3839 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| BmiI | GGNNCC | 6 cut(s) | 125, 1513, 1872, 2253, 3750, 4290 |
| BmrI | ACTGGG | 2 cut(s) | 3204, 3459 |
| BmuI | ACTGGG | 2 cut(s) | 3204, 3459 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3423 |
| BpiI | GAAGAC | 4 cut(s) | 1896, 2311, 3072, 3270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1772 |
| BpuEI | CTTGAG | 2 cut(s) | 615, 1412 |
| BpuMI | CCSGG | 4 cut(s) | 255, 3746, 4472, 4473 |
| BsaAI | YACGTR | 1 cut(s) | 1292 |
| BsaHI | GRCGYC | 3 cut(s) | 124, 281, 908 |
| BsaI | GGTCTC | 2 cut(s) | 262, 4425 |
| Bse118I | RCCGGY | 1 cut(s) | 31 |
| Bse21I | CCTNAGG | 1 cut(s) | 372 |
| Bse3DI | GCAATG | 2 cut(s) | 1725, 3238 |
| BseBI | CCWGG | 7 cut(s) | 1010, 1637, 2081, 2249, 3759, 4158, 4293 |
| BseMI | GCAATG | 2 cut(s) | 1725, 3238 |
| BseMII | CTCAG | 7 cut(s) | 152, 1010, 1105, 1752, 1763, 2142, 2436 |
| BseRI | GAGGAG | 7 cut(s) | 320, 795, 4443, 4512, 4587, 4695, 4698 |
| BseSI | GKGCMC | 1 cut(s) | 3838 |
| BseX3I | CGGCCG | 1 cut(s) | 248 |
| BseXI | GCAGC | 9 cut(s) | 70, 449, 471, 666, 742, 745, 1352, 1769, 3580 |
| BseYI | CCCAGC | 3 cut(s) | 657, 3391, 4422 |
| BsgI | GTGCAG | 2 cut(s) | 3095, 4296 |
| Bsh1236I | CGCG | 6 cut(s) | 50, 66, 68, 83, 169, 1050 |
| Bsh1285I | CGRYCG | 2 cut(s) | 251, 2133 |
| BshFI | GGCC | 7 cut(s) | 250, 410, 428, 473, 4557, 4699, 4713 |
| BshNI | GGYRCC | 2 cut(s) | 123, 3748 |
| BsiEI | CGRYCG | 2 cut(s) | 251, 2133 |
| BsiHKAI | GWGCWC | 2 cut(s) | 48, 948 |
| BsiHKCI | CYCGRG | 3 cut(s) | 3012, 4471, 4707 |
| BsiSI | CCGG | 6 cut(s) | 32, 254, 1811, 3746, 4472, 4539 |
| BsiWI | CGTACG | 1 cut(s) | 547 |
| BslFI | GGGAC | 8 cut(s) | 416, 919, 1525, 3198, 3431, 3628, 4064, 4346 |
| BsmAI | GTCTC | 7 cut(s) | 262, 3167, 3231, 3276, 3903, 4425, 4569 |
| BsmFI | GGGAC | 8 cut(s) | 416, 919, 1525, 3198, 3431, 3628, 4064, 4346 |
| BsmI | GAATGC | 4 cut(s) | 1649, 2518, 3849, 3880 |
| BsnI | GGCC | 7 cut(s) | 250, 410, 428, 473, 4557, 4699, 4713 |
| Bso31I | GGTCTC | 2 cut(s) | 262, 4425 |
| BsoBI | CYCGRG | 3 cut(s) | 3012, 4471, 4707 |
| Bsp1286I | GDGCHC | 3 cut(s) | 48, 948, 3838 |
| Bsp1407I | TGTACA | 1 cut(s) | 497 |
| Bsp19I | CCATGG | 2 cut(s) | 743, 4073 |
| Bsp68I | TCGCGA | 1 cut(s) | 1050 |
| BspANI | GGCC | 7 cut(s) | 250, 410, 428, 473, 4557, 4699, 4713 |
| BspCNI | CTCAG | 7 cut(s) | 151, 1009, 1104, 1753, 1764, 2143, 2437 |
| BspFNI | CGCG | 6 cut(s) | 50, 66, 68, 83, 169, 1050 |
| BspHI | TCATGA | 2 cut(s) | 1423, 4732 |
| BspLI | GGNNCC | 6 cut(s) | 125, 1513, 1872, 2253, 3750, 4290 |
| BspMAI | CTGCAG | 4 cut(s) | 2191, 2626, 2707, 2788 |
| BspMI | ACCTGC | 4 cut(s) | 2629, 2710, 3115, 3995 |
| BspPI | GGATC | 9 cut(s) | 880, 1076, 1853, 1865, 1878, 1938, 3024, 4012, 4156 |
| BspT107I | GGYRCC | 2 cut(s) | 123, 3748 |
| BspTNI | GGTCTC | 2 cut(s) | 262, 4425 |
| BsrBI | CCGCTC | 1 cut(s) | 55 |
| BsrDI | GCAATG | 2 cut(s) | 1725, 3238 |
| BsrFI | RCCGGY | 1 cut(s) | 31 |
| BsrGI | TGTACA | 1 cut(s) | 497 |
| BssAI | RCCGGY | 1 cut(s) | 31 |
| BssNI | GRCGYC | 3 cut(s) | 124, 281, 908 |
| BssT1I | CCWWGG | 7 cut(s) | 743, 1951, 2463, 4073, 4320, 4355, 4364 |
| Bst2UI | CCWGG | 7 cut(s) | 1010, 1637, 2081, 2249, 3759, 4158, 4293 |
| Bst4CI | ACNGT | 8 cut(s) | 1653, 1696, 2292, 2405, 2442, 3798, 4352, 4513 |
| Bst6I | CTCTTC | 4 cut(s) | 209, 674, 2538, 3726 |
| BstACI | GRCGYC | 3 cut(s) | 124, 281, 908 |
| BstAUI | TGTACA | 1 cut(s) | 497 |
| BstBAI | YACGTR | 1 cut(s) | 1292 |
| BstC8I | GCNNGC | 9 cut(s) | 33, 44, 48, 1755, 2579, 2784, 3847, 4659, 4715 |
| BstDSI | CCRYGG | 2 cut(s) | 743, 4073 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1163, 3762, 4707 |
| BstFNI | CGCG | 6 cut(s) | 50, 66, 68, 83, 169, 1050 |
| BstH2I | RGCGCY | 1 cut(s) | 127 |
| BstHHI | GCGC | 6 cut(s) | 68, 83, 126, 169, 1383, 1827 |
| BstMAI | GTCTC | 7 cut(s) | 262, 3167, 3231, 3276, 3903, 4425, 4569 |
| BstMCI | CGRYCG | 2 cut(s) | 251, 2133 |
| BstNI | CCWGG | 7 cut(s) | 1010, 1637, 2081, 2249, 3759, 4158, 4293 |
| BstNSI | RCATGY | 4 cut(s) | 579, 3789, 4057, 4339 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3423 |
| BstSFI | CTRYAG | 6 cut(s) | 2187, 2622, 2703, 2784, 4181, 4344 |
| BstSLI | GKGCMC | 1 cut(s) | 3838 |
| BstUI | CGCG | 6 cut(s) | 50, 66, 68, 83, 169, 1050 |
| BstV1I | GCAGC | 9 cut(s) | 70, 449, 471, 666, 742, 745, 1352, 1769, 3580 |
| BstV2I | GAAGAC | 4 cut(s) | 1896, 2311, 3072, 3270 |
| BstX2I | RGATCY | 6 cut(s) | 872, 1614, 1870, 1943, 3613, 4017 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2669, 2750 |
| BstYI | RGATCY | 6 cut(s) | 872, 1614, 1870, 1943, 3613, 4017 |
| BstZI | CGGCCG | 1 cut(s) | 248 |
| Bsu36I | CCTNAGG | 1 cut(s) | 372 |
| BsuI | GTATCC | 2 cut(s) | 678, 994 |
| BsuRI | GGCC | 7 cut(s) | 250, 410, 428, 473, 4557, 4699, 4713 |
| BtgI | CCRYGG | 2 cut(s) | 743, 4073 |
| BtgZI | GCGATG | 1 cut(s) | 3824 |
| BtrI | CACGTC | 2 cut(s) | 193, 3839 |
| BtsI | GCAGTG | 3 cut(s) | 204, 2196, 4308 |
| BtuMI | TCGCGA | 1 cut(s) | 1050 |
| BveI | ACCTGC | 4 cut(s) | 2629, 2710, 3115, 3995 |
| Cac8I | GCNNGC | 9 cut(s) | 33, 44, 48, 1755, 2579, 2784, 3847, 4659, 4715 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1801, 2630, 2711, 2792, 3274, 4157 |
| CciI | TCATGA | 2 cut(s) | 1423, 4732 |
| CfoI | GCGC | 6 cut(s) | 68, 83, 126, 169, 1383, 1827 |
| Cfr10I | RCCGGY | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| Cfr9I | CCCGGG | 1 cut(s) | 4471 |
| CseI | GACGC | 3 cut(s) | 88, 289, 3945 |
| DinI | GGCGCC | 1 cut(s) | 125 |
| EaeI | YGGCCR | 1 cut(s) | 248 |
| EagI | CGGCCG | 1 cut(s) | 248 |
| Eam1104I | CTCTTC | 4 cut(s) | 209, 674, 2538, 3726 |
| EarI | CTCTTC | 4 cut(s) | 209, 674, 2538, 3726 |
| EciI | GGCGGA | 2 cut(s) | 89, 101 |
| Ecl136II | GAGCTC | 1 cut(s) | 946 |
| EclXI | CGGCCG | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 7 cut(s) | 743, 1951, 2463, 4073, 4320, 4355, 4364 |
| Eco147I | AGGCCT | 2 cut(s) | 410, 473 |
| Eco24I | GRGCYC | 1 cut(s) | 948 |
| Eco31I | GGTCTC | 2 cut(s) | 262, 4425 |
| Eco47I | GGWCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| Eco52I | CGGCCG | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 946 |
| Eco57I | CTGAAG | 8 cut(s) | 939, 1548, 1908, 2619, 2700, 2781, 3645, 3750 |
| Eco81I | CCTNAGG | 1 cut(s) | 372 |
| Eco88I | CYCGRG | 3 cut(s) | 3012, 4471, 4707 |
| EcoICRI | GAGCTC | 1 cut(s) | 946 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1163, 3762, 4707 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2251 |
| EcoRI | GAATTC | 2 cut(s) | 1628, 4189 |
| EcoRII | CCWGG | 7 cut(s) | 1008, 1635, 2079, 2247, 3757, 4156, 4291 |
| EcoT14I | CCWWGG | 7 cut(s) | 743, 1951, 2463, 4073, 4320, 4355, 4364 |
| EcoT22I | ATGCAT | 2 cut(s) | 1336, 2389 |
| EcoT38I | GRGCYC | 1 cut(s) | 948 |
| EgeI | GGCGCC | 1 cut(s) | 125 |
| EheI | GGCGCC | 1 cut(s) | 125 |
| ErhI | CCWWGG | 7 cut(s) | 743, 1951, 2463, 4073, 4320, 4355, 4364 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 932, 964, 1957, 1989, 3103, 3135 |
| FaqI | GGGAC | 8 cut(s) | 416, 919, 1525, 3198, 3431, 3628, 4064, 4346 |
| FauI | CCCGC | 4 cut(s) | 234, 393, 4710, 4733 |
| FauNDI | CATATG | 4 cut(s) | 183, 966, 1336, 2923 |
| FbaI | TGATCA | 5 cut(s) | 1471, 1609, 1621, 1680, 3964 |
| FblI | GTMKAC | 2 cut(s) | 24, 4340 |
| FriOI | GRGCYC | 1 cut(s) | 948 |
| FspBI | CTAG | 8 cut(s) | 888, 1464, 3546, 3921, 4059, 4083, 4236, 4365 |
| FspI | TGCGCA | 1 cut(s) | 1826 |
| GlaI | GCGC | 6 cut(s) | 67, 82, 125, 168, 1382, 1826 |
| GsaI | CCCAGC | 3 cut(s) | 661, 3395, 4426 |
| HaeII | RGCGCY | 1 cut(s) | 127 |
| HaeIII | GGCC | 7 cut(s) | 250, 410, 428, 473, 4557, 4699, 4713 |
| HapII | CCGG | 6 cut(s) | 32, 254, 1811, 3746, 4472, 4539 |
| HgaI | GACGC | 3 cut(s) | 88, 289, 3945 |
| HhaI | GCGC | 6 cut(s) | 68, 83, 126, 169, 1383, 1827 |
| Hin1I | GRCGYC | 3 cut(s) | 124, 281, 908 |
| Hin6I | GCGC | 6 cut(s) | 66, 81, 124, 167, 1381, 1825 |
| HinP1I | GCGC | 6 cut(s) | 66, 81, 124, 167, 1381, 1825 |
| HincII | GTYRAC | 2 cut(s) | 3991, 4279 |
| HindII | GTYRAC | 2 cut(s) | 3991, 4279 |
| HindIII | AAGCTT | 3 cut(s) | 1139, 1565, 2575 |
| HpaI | GTTAAC | 1 cut(s) | 4279 |
| HpaII | CCGG | 6 cut(s) | 32, 254, 1811, 3746, 4472, 4539 |
| Hpy99I | CGWCG | 4 cut(s) | 104, 134, 149, 283 |
| HpyCH4III | ACNGT | 8 cut(s) | 1653, 1696, 2292, 2405, 2442, 3798, 4352, 4513 |
| HpyCH4IV | ACGT | 6 cut(s) | 192, 908, 1291, 1819, 3474, 3838 |
| HpySE526I | ACGT | 6 cut(s) | 192, 908, 1291, 1819, 3474, 3838 |
| Hsp92I | GRCGYC | 3 cut(s) | 124, 281, 908 |
| HspAI | GCGC | 6 cut(s) | 66, 81, 124, 167, 1381, 1825 |
| KasI | GGCGCC | 1 cut(s) | 123 |
| KroI | GCCGGC | 1 cut(s) | 31 |
| KroNI | GCCGGC | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 5 cut(s) | 1471, 1609, 1621, 1680, 3964 |
| KspAI | GTTAAC | 1 cut(s) | 4279 |
| Lsp1109I | GCAGC | 9 cut(s) | 70, 449, 471, 666, 742, 745, 1352, 1769, 3580 |
| MaeI | CTAG | 8 cut(s) | 888, 1464, 3546, 3921, 4059, 4083, 4236, 4365 |
| MaeII | ACGT | 6 cut(s) | 192, 908, 1291, 1819, 3474, 3838 |
| MaeIII | GTNAC | 6 cut(s) | 896, 1121, 1653, 3358, 3467, 4769 |
| MbiI | CCGCTC | 1 cut(s) | 55 |
| MfeI | CAATTG | 4 cut(s) | 1443, 1605, 3968, 4283 |
| MflI | RGATCY | 6 cut(s) | 872, 1614, 1870, 1943, 3613, 4017 |
| MhlI | GDGCHC | 3 cut(s) | 48, 948, 3838 |
| Mly113I | GGCGCC | 1 cut(s) | 124 |
| MlyI | GAGTC | 9 cut(s) | 1799, 2132, 2325, 2360, 2849, 2963, 3413, 3611, 3650 |
| MmeI | TCCRAC | 3 cut(s) | 127, 4436, 4472 |
| Mph1103I | ATGCAT | 2 cut(s) | 1336, 2389 |
| MroNI | GCCGGC | 1 cut(s) | 31 |
| MroXI | GAANNNNTTC | 4 cut(s) | 3348, 4116, 4270, 4398 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2667, 2748, 4169, 4220 |
| MspA1I | CMGCKG | 6 cut(s) | 462, 657, 1760, 2129, 3505, 4717 |
| MspI | CCGG | 6 cut(s) | 32, 254, 1811, 3746, 4472, 4539 |
| MunI | CAATTG | 4 cut(s) | 1443, 1605, 3968, 4283 |
| Mva1269I | GAATGC | 4 cut(s) | 1649, 2518, 3849, 3880 |
| MvaI | CCWGG | 7 cut(s) | 1010, 1637, 2081, 2249, 3759, 4158, 4293 |
| MvnI | CGCG | 6 cut(s) | 50, 66, 68, 83, 169, 1050 |
| NaeI | GCCGGC | 1 cut(s) | 33 |
| NarI | GGCGCC | 1 cut(s) | 124 |
| NciI | CCSGG | 4 cut(s) | 255, 3746, 4472, 4473 |
| NcoI | CCATGG | 2 cut(s) | 743, 4073 |
| NdeI | CATATG | 4 cut(s) | 183, 966, 1336, 2923 |
| NgoMIV | GCCGGC | 1 cut(s) | 31 |
| NlaIV | GGNNCC | 6 cut(s) | 125, 1513, 1872, 2253, 3750, 4290 |
| NmuCI | GTSAC | 3 cut(s) | 896, 1121, 3467 |
| NruI | TCGCGA | 1 cut(s) | 1050 |
| NsbI | TGCGCA | 1 cut(s) | 1826 |
| NsiI | ATGCAT | 2 cut(s) | 1336, 2389 |
| NspI | RCATGY | 4 cut(s) | 579, 3789, 4057, 4339 |
| OliI | CACNNNNGTG | 2 cut(s) | 4169, 4220 |
| PaeR7I | CTCGAG | 1 cut(s) | 4707 |
| PagI | TCATGA | 2 cut(s) | 1423, 4732 |
| PaqCI | CACCTGC | 4 cut(s) | 2629, 2710, 3115, 3995 |
| PceI | AGGCCT | 2 cut(s) | 410, 473 |
| PciI | ACATGT | 4 cut(s) | 575, 3785, 4053, 4335 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 108, 126 |
| PctI | GAATGC | 4 cut(s) | 1649, 2518, 3849, 3880 |
| PdiI | GCCGGC | 1 cut(s) | 33 |
| PdmI | GAANNNNTTC | 4 cut(s) | 3348, 4116, 4270, 4398 |
| Pfl23II | CGTACG | 1 cut(s) | 547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3233 |
| PleI | GAGTC | 9 cut(s) | 1799, 2131, 2324, 2360, 2848, 2963, 3413, 3610, 3649 |
| PluTI | GGCGCC | 1 cut(s) | 127 |
| PpsI | GAGTC | 9 cut(s) | 1799, 2131, 2324, 2360, 2848, 2963, 3413, 3610, 3649 |
| Ppu21I | YACGTR | 1 cut(s) | 1292 |
| PpuMI | RGGWCCY | 1 cut(s) | 2251 |
| PscI | ACATGT | 4 cut(s) | 575, 3785, 4053, 4335 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3423 |
| PshBI | ATTAAT | 1 cut(s) | 1362 |
| PsiI | TTATAA | 1 cut(s) | 1163 |
| Psp124BI | GAGCTC | 1 cut(s) | 948 |
| Psp5II | RGGWCCY | 1 cut(s) | 2251 |
| Psp6I | CCWGG | 7 cut(s) | 1008, 1635, 2079, 2247, 3757, 4156, 4291 |
| PspFI | CCCAGC | 3 cut(s) | 657, 3391, 4422 |
| PspGI | CCWGG | 7 cut(s) | 1008, 1635, 2079, 2247, 3757, 4156, 4291 |
| PspLI | CGTACG | 1 cut(s) | 547 |
| PspN4I | GGNNCC | 6 cut(s) | 125, 1513, 1872, 2253, 3750, 4290 |
| PspPI | GGNCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| PspPPI | RGGWCCY | 1 cut(s) | 2251 |
| PspXI | VCTCGAGB | 1 cut(s) | 4707 |
| PstI | CTGCAG | 4 cut(s) | 2191, 2626, 2707, 2788 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1801, 2630, 2711, 2792, 3274, 4157 |
| PsuI | RGATCY | 6 cut(s) | 872, 1614, 1870, 1943, 3613, 4017 |
| PvuII | CAGCTG | 4 cut(s) | 462, 657, 1760, 3505 |
| RruI | TCGCGA | 1 cut(s) | 1050 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2667, 2748, 4169, 4220 |
| SacI | GAGCTC | 1 cut(s) | 948 |
| Sau96I | GGNCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| ScaI | AGTACT | 1 cut(s) | 2402 |
| SchI | GAGTC | 9 cut(s) | 1799, 2132, 2325, 2360, 2849, 2963, 3413, 3611, 3650 |
| SduI | GDGCHC | 3 cut(s) | 48, 948, 3838 |
| SfcI | CTRYAG | 6 cut(s) | 2187, 2622, 2703, 2784, 4181, 4344 |
| SfoI | GGCGCC | 1 cut(s) | 125 |
| Sfr274I | CTCGAG | 1 cut(s) | 4707 |
| SinI | GGWCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| SlaI | CTCGAG | 1 cut(s) | 4707 |
| SmaI | CCCGGG | 1 cut(s) | 4473 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2667, 2748, 4169, 4220 |
| SmlI | CTYRAG | 3 cut(s) | 630, 1391, 4707 |
| SmoI | CTYRAG | 3 cut(s) | 630, 1391, 4707 |
| SseBI | AGGCCT | 2 cut(s) | 410, 473 |
| SspDI | GGCGCC | 1 cut(s) | 123 |
| SspI | AATATT | 2 cut(s) | 1189, 1360 |
| SspMI | CTAG | 8 cut(s) | 888, 1464, 3546, 3921, 4059, 4083, 4236, 4365 |
| SstI | GAGCTC | 1 cut(s) | 948 |
| StuI | AGGCCT | 2 cut(s) | 410, 473 |
| StyI | CCWWGG | 7 cut(s) | 743, 1951, 2463, 4073, 4320, 4355, 4364 |
| TaaI | ACNGT | 8 cut(s) | 1653, 1696, 2292, 2405, 2442, 3798, 4352, 4513 |
| TaiI | ACGT | 6 cut(s) | 195, 911, 1294, 1822, 3477, 3841 |
| TaqI | TCGA | 9 cut(s) | 102, 129, 938, 1549, 2133, 2335, 3671, 3782, 4708 |
| TaqII | GACCGA | 1 cut(s) | 4449 |
| TatI | WGTACW | 8 cut(s) | 497, 678, 1026, 2400, 2696, 4061, 4442, 4513 |
| TauI | GCSGC | 8 cut(s) | 58, 71, 74, 86, 253, 629, 1381, 4702 |
| TseFI | GTSAC | 3 cut(s) | 896, 1121, 3467 |
| TseI | GCWGC | 9 cut(s) | 58, 459, 462, 654, 755, 758, 1340, 1757, 3593 |
| Tsp45I | GTSAC | 3 cut(s) | 896, 1121, 3467 |
| TspGWI | ACGGA | 6 cut(s) | 915, 976, 1936, 3061, 3921, 4584 |
| TspMI | CCCGGG | 1 cut(s) | 4471 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3233 |
| VpaK11BI | GGWCC | 6 cut(s) | 4, 1512, 2251, 2273, 4463, 4589 |
| VspI | ATTAAT | 1 cut(s) | 1362 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1163, 3762, 4707 |
| XceI | RCATGY | 4 cut(s) | 579, 3789, 4057, 4339 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2255 |
| XhoI | CTCGAG | 1 cut(s) | 4707 |
| XmaI | CCCGGG | 1 cut(s) | 4471 |
| XmaJI | CCTAGG | 1 cut(s) | 4364 |
| XmiI | GTMKAC | 2 cut(s) | 24, 4340 |
| XmnI | GAANNNNTTC | 4 cut(s) | 3348, 4116, 4270, 4398 |
| XspI | CTAG | 8 cut(s) | 888, 1464, 3546, 3921, 4059, 4083, 4236, 4365 |
| ZraI | GACGTC | 1 cut(s) | 909 |
| ZrmI | AGTACT | 1 cut(s) | 2402 |
| Zsp2I | ATGCAT | 2 cut(s) | 1336, 2389 |