zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1238, 1611, 2535 |
| AarI | CACCTGC | 1 cut(s) | 3431 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 251 |
| AatII | GACGTC | 1 cut(s) | 3140 |
| Acc36I | ACCTGC | 1 cut(s) | 3431 |
| Acc65I | GGTACC | 2 cut(s) | 1586, 3769 |
| AccB1I | GGYRCC | 3 cut(s) | 1586, 3769, 4070 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3203 |
| AccII | CGCG | 4 cut(s) | 116, 172, 1863, 3461 |
| AclI | AACGTT | 1 cut(s) | 2724 |
| AcoI | YGGCCR | 5 cut(s) | 299, 2589, 2611, 2698, 3366 |
| AcuI | CTGAAG | 3 cut(s) | 1014, 3618, 3882 |
| AcyI | GRCGYC | 2 cut(s) | 326, 3137 |
| AdeI | CACNNNGTG | 1 cut(s) | 971 |
| AfeI | AGCGCT | 1 cut(s) | 3859 |
| AflII | CTTAAG | 1 cut(s) | 3745 |
| AflIII | ACRYGT | 2 cut(s) | 620, 1364 |
| AgeI | ACCGGT | 1 cut(s) | 99 |
| AhlI | ACTAGT | 1 cut(s) | 1286 |
| AjiI | CACGTC | 2 cut(s) | 247, 316 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 951, 983 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 698, 730 |
| Alw21I | GWGCWC | 6 cut(s) | 9, 187, 771, 1023, 1980, 3290 |
| Alw26I | GTCTC | 8 cut(s) | 2022, 2348, 3052, 3128, 3412, 3621, 3867, 4173 |
| Alw44I | GTGCAC | 1 cut(s) | 1976 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 411, 1927 |
| Ama87I | CYCGRG | 1 cut(s) | 1097 |
| Aor51HI | AGCGCT | 1 cut(s) | 3859 |
| ApaLI | GTGCAC | 1 cut(s) | 1976 |
| AseI | ATTAAT | 1 cut(s) | 774 |
| AsiGI | ACCGGT | 1 cut(s) | 99 |
| Asp718I | GGTACC | 2 cut(s) | 1586, 3769 |
| AspLEI | GCGC | 5 cut(s) | 88, 1455, 1953, 3860, 4108 |
| AvaI | CYCGRG | 1 cut(s) | 1097 |
| AvaII | GGWCC | 9 cut(s) | 121, 157, 797, 1388, 2332, 2402, 3275, 3917, 4193 |
| AxyI | CCTNAGG | 1 cut(s) | 417 |
| BaeGI | GKGCMC | 4 cut(s) | 315, 1980, 2448, 3319 |
| BalI | TGGCCA | 3 cut(s) | 2591, 2613, 2700 |
| BamHI | GGATCC | 5 cut(s) | 1317, 1996, 2806, 2956, 3545 |
| BanI | GGYRCC | 3 cut(s) | 1586, 3769, 4070 |
| BanII | GRGCYC | 5 cut(s) | 9, 187, 771, 1023, 1755 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2812, 2844 |
| BauI | CACGAG | 1 cut(s) | 389 |
| BbsI | GAAGAC | 4 cut(s) | 1112, 1488, 2022, 2333 |
| Bbv12I | GWGCWC | 6 cut(s) | 9, 187, 771, 1023, 1980, 3290 |
| BceAI | ACGGC | 4 cut(s) | 1440, 1862, 2247, 4189 |
| BclI | TGATCA | 3 cut(s) | 136, 1546, 2935 |
| BcoDI | GTCTC | 8 cut(s) | 2022, 2348, 3052, 3128, 3412, 3621, 3867, 4173 |
| BcuI | ACTAGT | 1 cut(s) | 1286 |
| BfmI | CTRYAG | 6 cut(s) | 37, 1275, 2316, 2751, 2871, 3702 |
| BfoI | RGCGCY | 1 cut(s) | 3861 |
| BfrI | CTTAAG | 1 cut(s) | 3745 |
| BfuAI | ACCTGC | 1 cut(s) | 3431 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 310, 3033 |
| BglII | AGATCT | 2 cut(s) | 1689, 3586 |
| BlpI | GCTNAGC | 1 cut(s) | 18 |
| Bme18I | GGWCC | 9 cut(s) | 121, 157, 797, 1388, 2332, 2402, 3275, 3917, 4193 |
| BmeT110I | CYCGRG | 1 cut(s) | 1097 |
| BmgBI | CACGTC | 2 cut(s) | 247, 316 |
| BmrI | ACTGGG | 2 cut(s) | 2451, 3174 |
| BmuI | ACTGGG | 2 cut(s) | 2451, 3174 |
| BpiI | GAAGAC | 4 cut(s) | 1112, 1488, 2022, 2333 |
| BpmI | CTGGAG | 6 cut(s) | 1920, 2046, 3076, 3304, 3736, 4122 |
| Bpu10I | CCTNAGC | 3 cut(s) | 277, 1898, 2973 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 1 cut(s) | 3404 |
| BsaAI | YACGTR | 1 cut(s) | 1367 |
| BsaHI | GRCGYC | 2 cut(s) | 326, 3137 |
| BsaI | GGTCTC | 1 cut(s) | 3052 |
| BsaWI | WCCGGW | 2 cut(s) | 99, 2783 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 280, 310, 698, 728 |
| Bse118I | RCCGGY | 4 cut(s) | 99, 200, 328, 799 |
| Bse21I | CCTNAGG | 1 cut(s) | 417 |
| Bse3DI | GCAATG | 3 cut(s) | 1800, 3208, 3615 |
| BseMI | GCAATG | 3 cut(s) | 1800, 3208, 3615 |
| BseMII | CTCAG | 7 cut(s) | 32, 1982, 2271, 2588, 2987, 2994, 3634 |
| BseRI | GAGGAG | 7 cut(s) | 16, 78, 81, 90, 2931, 4287, 4293 |
| BseSI | GKGCMC | 4 cut(s) | 315, 1980, 2448, 3319 |
| BseX3I | CGGCCG | 1 cut(s) | 299 |
| BseYI | CCCAGC | 3 cut(s) | 702, 4047, 4142 |
| BsgI | GTGCAG | 1 cut(s) | 3921 |
| Bsh1236I | CGCG | 4 cut(s) | 116, 172, 1863, 3461 |
| Bsh1285I | CGRYCG | 6 cut(s) | 104, 114, 153, 198, 302, 1867 |
| BshNI | GGYRCC | 3 cut(s) | 1586, 3769, 4070 |
| BshTI | ACCGGT | 1 cut(s) | 99 |
| BsiEI | CGRYCG | 6 cut(s) | 104, 114, 153, 198, 302, 1867 |
| BsiHKAI | GWGCWC | 6 cut(s) | 9, 187, 771, 1023, 1980, 3290 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1097 |
| BsiSI | CCGG | 7 cut(s) | 100, 201, 329, 800, 1135, 2784, 3365 |
| BslFI | GGGAC | 3 cut(s) | 170, 461, 3971 |
| BsmAI | GTCTC | 8 cut(s) | 2022, 2348, 3052, 3128, 3412, 3621, 3867, 4173 |
| BsmBI | CGTCTC | 1 cut(s) | 3128 |
| BsmFI | GGGAC | 3 cut(s) | 170, 461, 3971 |
| BsmI | GAATGC | 4 cut(s) | 1724, 2647, 3806, 3844 |
| Bso31I | GGTCTC | 1 cut(s) | 3052 |
| BsoBI | CYCGRG | 1 cut(s) | 1097 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 18 |
| Bsp19I | CCATGG | 3 cut(s) | 788, 2111, 2592 |
| Bsp68I | TCGCGA | 1 cut(s) | 1863 |
| BspCNI | CTCAG | 7 cut(s) | 31, 1981, 2272, 2587, 2986, 2995, 3633 |
| BspFNI | CGCG | 4 cut(s) | 116, 172, 1863, 3461 |
| BspHI | TCATGA | 2 cut(s) | 1498, 3648 |
| BspMAI | CTGCAG | 2 cut(s) | 1279, 2320 |
| BspMI | ACCTGC | 1 cut(s) | 3431 |
| BspQI | GCTCTTC | 1 cut(s) | 266 |
| BspT107I | GGYRCC | 3 cut(s) | 1586, 3769, 4070 |
| BspTI | CTTAAG | 1 cut(s) | 3745 |
| BspTNI | GGTCTC | 1 cut(s) | 3052 |
| BsrDI | GCAATG | 3 cut(s) | 1800, 3208, 3615 |
| BsrFI | RCCGGY | 4 cut(s) | 99, 200, 328, 799 |
| BssAI | RCCGGY | 4 cut(s) | 99, 200, 328, 799 |
| BssNI | GRCGYC | 2 cut(s) | 326, 3137 |
| BssSI | CACGAG | 1 cut(s) | 389 |
| BssT1I | CCWWGG | 4 cut(s) | 788, 2063, 2111, 2592 |
| Bst2BI | CACGAG | 1 cut(s) | 389 |
| Bst4CI | ACNGT | 9 cut(s) | 196, 955, 1003, 1118, 1764, 1771, 2529, 2587, 2997 |
| Bst6I | CTCTTC | 4 cut(s) | 67, 266, 345, 2667 |
| BstACI | GRCGYC | 2 cut(s) | 326, 3137 |
| BstAFI | CTTAAG | 1 cut(s) | 3745 |
| BstBAI | YACGTR | 1 cut(s) | 1367 |
| BstC8I | GCNNGC | 4 cut(s) | 202, 2286, 2708, 4310 |
| BstDSI | CCRYGG | 5 cut(s) | 114, 788, 2111, 2592, 3459 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1238, 3732 |
| BstFNI | CGCG | 4 cut(s) | 116, 172, 1863, 3461 |
| BstH2I | RGCGCY | 1 cut(s) | 3861 |
| BstHHI | GCGC | 5 cut(s) | 88, 1455, 1953, 3860, 4108 |
| BstMAI | GTCTC | 8 cut(s) | 2022, 2348, 3052, 3128, 3412, 3621, 3867, 4173 |
| BstMCI | CGRYCG | 6 cut(s) | 104, 114, 153, 198, 302, 1867 |
| BstNSI | RCATGY | 1 cut(s) | 624 |
| BstSFI | CTRYAG | 6 cut(s) | 37, 1275, 2316, 2751, 2871, 3702 |
| BstSLI | GKGCMC | 4 cut(s) | 315, 1980, 2448, 3319 |
| BstUI | CGCG | 4 cut(s) | 116, 172, 1863, 3461 |
| BstV2I | GAAGAC | 4 cut(s) | 1112, 1488, 2022, 2333 |
| BstX2I | RGATCY | 7 cut(s) | 1317, 1689, 1996, 2806, 2956, 3545, 3586 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 1303, 2506, 2621, 2852, 3044 |
| BstYI | RGATCY | 7 cut(s) | 1317, 1689, 1996, 2806, 2956, 3545, 3586 |
| BstZI | CGGCCG | 1 cut(s) | 299 |
| Bsu36I | CCTNAGG | 1 cut(s) | 417 |
| BtgI | CCRYGG | 5 cut(s) | 114, 788, 2111, 2592, 3459 |
| BtgZI | GCGATG | 2 cut(s) | 2286, 2426 |
| BtrI | CACGTC | 2 cut(s) | 247, 316 |
| BtsI | GCAGTG | 5 cut(s) | 1276, 2325, 2523, 3288, 3933 |
| BtuMI | TCGCGA | 1 cut(s) | 1863 |
| BveI | ACCTGC | 1 cut(s) | 3431 |
| Cac8I | GCNNGC | 4 cut(s) | 202, 2286, 2708, 4310 |
| CaiI | CAGNNNCTG | 2 cut(s) | 411, 1927 |
| CciI | TCATGA | 2 cut(s) | 1498, 3648 |
| CfoI | GCGC | 5 cut(s) | 88, 1455, 1953, 3860, 4108 |
| Cfr10I | RCCGGY | 4 cut(s) | 99, 200, 328, 799 |
| Cfr42I | CCGCGG | 2 cut(s) | 117, 3462 |
| CseI | GACGC | 1 cut(s) | 334 |
| CsiI | ACCWGGT | 1 cut(s) | 2208 |
| CspAI | ACCGGT | 1 cut(s) | 99 |
| DraI | TTTAAA | 1 cut(s) | 463 |
| DraIII | CACNNNGTG | 1 cut(s) | 971 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 251 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 251 |
| EaeI | YGGCCR | 5 cut(s) | 299, 2589, 2611, 2698, 3366 |
| EagI | CGGCCG | 1 cut(s) | 299 |
| Eam1104I | CTCTTC | 4 cut(s) | 67, 266, 345, 2667 |
| EarI | CTCTTC | 4 cut(s) | 67, 266, 345, 2667 |
| EciI | GGCGGA | 2 cut(s) | 257, 4191 |
| Ecl136II | GAGCTC | 4 cut(s) | 7, 185, 769, 1021 |
| EclXI | CGGCCG | 1 cut(s) | 299 |
| Eco130I | CCWWGG | 4 cut(s) | 788, 2063, 2111, 2592 |
| Eco147I | AGGCCT | 1 cut(s) | 4294 |
| Eco24I | GRGCYC | 5 cut(s) | 9, 187, 771, 1023, 1755 |
| Eco31I | GGTCTC | 1 cut(s) | 3052 |
| Eco47I | GGWCC | 9 cut(s) | 121, 157, 797, 1388, 2332, 2402, 3275, 3917, 4193 |
| Eco47III | AGCGCT | 1 cut(s) | 3859 |
| Eco52I | CGGCCG | 1 cut(s) | 299 |
| Eco53kI | GAGCTC | 4 cut(s) | 7, 185, 769, 1021 |
| Eco57I | CTGAAG | 3 cut(s) | 1014, 3618, 3882 |
| Eco81I | CCTNAGG | 1 cut(s) | 417 |
| Eco88I | CYCGRG | 1 cut(s) | 1097 |
| EcoICRI | GAGCTC | 4 cut(s) | 7, 185, 769, 1021 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1238, 3732 |
| EcoO109I | RGGNCCY | 1 cut(s) | 157 |
| EcoRI | GAATTC | 1 cut(s) | 1703 |
| EcoT14I | CCWWGG | 4 cut(s) | 788, 2063, 2111, 2592 |
| EcoT22I | ATGCAT | 1 cut(s) | 3520 |
| EcoT38I | GRGCYC | 5 cut(s) | 9, 187, 771, 1023, 1755 |
| ErhI | CCWWGG | 4 cut(s) | 788, 2063, 2111, 2592 |
| Esp3I | CGTCTC | 1 cut(s) | 3128 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2083, 2115, 3064, 3096 |
| FaqI | GGGAC | 3 cut(s) | 170, 461, 3971 |
| FauI | CCCGC | 5 cut(s) | 256, 285, 438, 4305, 4328 |
| FauNDI | CATATG | 4 cut(s) | 1041, 1411, 2890, 4267 |
| FbaI | TGATCA | 3 cut(s) | 136, 1546, 2935 |
| FriOI | GRGCYC | 5 cut(s) | 9, 187, 771, 1023, 1755 |
| GlaI | GCGC | 5 cut(s) | 87, 1454, 1952, 3859, 4107 |
| GsaI | CCCAGC | 3 cut(s) | 706, 4051, 4146 |
| GsuI | CTGGAG | 6 cut(s) | 1920, 2046, 3076, 3304, 3736, 4122 |
| HaeII | RGCGCY | 1 cut(s) | 3861 |
| HapII | CCGG | 7 cut(s) | 100, 201, 329, 800, 1135, 2784, 3365 |
| HgaI | GACGC | 1 cut(s) | 334 |
| HhaI | GCGC | 5 cut(s) | 88, 1455, 1953, 3860, 4108 |
| Hin1I | GRCGYC | 2 cut(s) | 326, 3137 |
| Hin6I | GCGC | 5 cut(s) | 86, 1453, 1951, 3858, 4106 |
| HinP1I | GCGC | 5 cut(s) | 86, 1453, 1951, 3858, 4106 |
| HincII | GTYRAC | 2 cut(s) | 1767, 3901 |
| HindII | GTYRAC | 2 cut(s) | 1767, 3901 |
| HindIII | AAGCTT | 2 cut(s) | 1640, 2704 |
| HpaII | CCGG | 7 cut(s) | 100, 201, 329, 800, 1135, 2784, 3365 |
| Hpy99I | CGWCG | 1 cut(s) | 328 |
| HpyCH4III | ACNGT | 9 cut(s) | 196, 955, 1003, 1118, 1764, 1771, 2529, 2587, 2997 |
| HpyCH4IV | ACGT | 8 cut(s) | 246, 315, 357, 1366, 1732, 1945, 2724, 3137 |
| HpySE526I | ACGT | 8 cut(s) | 246, 315, 357, 1366, 1732, 1945, 2724, 3137 |
| Hsp92I | GRCGYC | 2 cut(s) | 326, 3137 |
| HspAI | GCGC | 5 cut(s) | 86, 1453, 1951, 3858, 4106 |
| KpnI | GGTACC | 2 cut(s) | 1590, 3773 |
| KroI | GCCGGC | 1 cut(s) | 200 |
| KroNI | GCCGGC | 1 cut(s) | 202 |
| Ksp22I | TGATCA | 3 cut(s) | 136, 1546, 2935 |
| KspI | CCGCGG | 2 cut(s) | 117, 3462 |
| LguI | GCTCTTC | 1 cut(s) | 266 |
| MabI | ACCWGGT | 1 cut(s) | 2208 |
| MaeII | ACGT | 8 cut(s) | 246, 315, 357, 1366, 1732, 1945, 2724, 3137 |
| MaeIII | GTNAC | 6 cut(s) | 398, 1196, 1282, 1457, 2120, 3778 |
| MfeI | CAATTG | 1 cut(s) | 1680 |
| MflI | RGATCY | 7 cut(s) | 1317, 1689, 1996, 2806, 2956, 3545, 3586 |
| MlsI | TGGCCA | 3 cut(s) | 2591, 2613, 2700 |
| MluNI | TGGCCA | 3 cut(s) | 2591, 2613, 2700 |
| MlyI | GAGTC | 4 cut(s) | 2018, 2489, 3478, 3623 |
| MmeI | TCCRAC | 3 cut(s) | 160, 3123, 4134 |
| Mox20I | TGGCCA | 3 cut(s) | 2591, 2613, 2700 |
| Mph1103I | ATGCAT | 1 cut(s) | 3520 |
| MreI | CGCCGGCG | 1 cut(s) | 200 |
| MroNI | GCCGGC | 1 cut(s) | 200 |
| MscI | TGGCCA | 3 cut(s) | 2591, 2613, 2700 |
| MseI | TTAA | 7 cut(s) | 462, 755, 774, 1211, 1851, 3110, 3746 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2376, 2715 |
| Msp20I | TGGCCA | 3 cut(s) | 2591, 2613, 2700 |
| MspA1I | CMGCKG | 9 cut(s) | 116, 702, 1406, 2422, 3461, 3481, 3624, 4142, 4312 |
| MspCI | CTTAAG | 1 cut(s) | 3745 |
| MspI | CCGG | 7 cut(s) | 100, 201, 329, 800, 1135, 2784, 3365 |
| MunI | CAATTG | 1 cut(s) | 1680 |
| Mva1269I | GAATGC | 4 cut(s) | 1724, 2647, 3806, 3844 |
| MvnI | CGCG | 4 cut(s) | 116, 172, 1863, 3461 |
| NaeI | GCCGGC | 1 cut(s) | 202 |
| NcoI | CCATGG | 3 cut(s) | 788, 2111, 2592 |
| NdeI | CATATG | 4 cut(s) | 1041, 1411, 2890, 4267 |
| NgoMIV | GCCGGC | 1 cut(s) | 200 |
| NmuCI | GTSAC | 4 cut(s) | 398, 1196, 2120, 3778 |
| NruI | TCGCGA | 1 cut(s) | 1863 |
| NsiI | ATGCAT | 1 cut(s) | 3520 |
| NspI | RCATGY | 1 cut(s) | 624 |
| PaeR7I | CTCGAG | 1 cut(s) | 1097 |
| PagI | TCATGA | 2 cut(s) | 1498, 3648 |
| PaqCI | CACCTGC | 1 cut(s) | 3431 |
| PasI | CCCWGGG | 1 cut(s) | 4027 |
| PceI | AGGCCT | 1 cut(s) | 4294 |
| PciI | ACATGT | 1 cut(s) | 620 |
| PciSI | GCTCTTC | 1 cut(s) | 266 |
| PctI | GAATGC | 4 cut(s) | 1724, 2647, 3806, 3844 |
| PdiI | GCCGGC | 1 cut(s) | 202 |
| PflFI | GACNNNGTC | 2 cut(s) | 45, 2054 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3203 |
| PinAI | ACCGGT | 1 cut(s) | 99 |
| Ple19I | CGATCG | 1 cut(s) | 153 |
| PleI | GAGTC | 4 cut(s) | 2017, 2489, 3478, 3622 |
| PpsI | GAGTC | 4 cut(s) | 2017, 2489, 3478, 3622 |
| Ppu21I | YACGTR | 1 cut(s) | 1367 |
| PpuMI | RGGWCCY | 1 cut(s) | 157 |
| PscI | ACATGT | 1 cut(s) | 620 |
| PshBI | ATTAAT | 1 cut(s) | 774 |
| PsiI | TTATAA | 3 cut(s) | 1238, 1611, 2535 |
| Psp124BI | GAGCTC | 4 cut(s) | 9, 187, 771, 1023 |
| Psp1406I | AACGTT | 1 cut(s) | 2724 |
| Psp5II | RGGWCCY | 1 cut(s) | 157 |
| PspFI | CCCAGC | 3 cut(s) | 702, 4047, 4142 |
| PspPPI | RGGWCCY | 1 cut(s) | 157 |
| PspXI | VCTCGAGB | 1 cut(s) | 1097 |
| PstI | CTGCAG | 2 cut(s) | 1279, 2320 |
| PstNI | CAGNNNCTG | 2 cut(s) | 411, 1927 |
| PsuI | RGATCY | 7 cut(s) | 1317, 1689, 1996, 2806, 2956, 3545, 3586 |
| PsyI | GACNNNGTC | 2 cut(s) | 45, 2054 |
| PvuI | CGATCG | 1 cut(s) | 153 |
| PvuII | CAGCTG | 5 cut(s) | 702, 1406, 2422, 3481, 4142 |
| RruI | TCGCGA | 1 cut(s) | 1863 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2376, 2715 |
| SacI | GAGCTC | 4 cut(s) | 9, 187, 771, 1023 |
| SacII | CCGCGG | 2 cut(s) | 117, 3462 |
| SapI | GCTCTTC | 1 cut(s) | 266 |
| SaqAI | TTAA | 7 cut(s) | 462, 755, 774, 1211, 1851, 3110, 3746 |
| SchI | GAGTC | 4 cut(s) | 2018, 2489, 3478, 3623 |
| SexAI | ACCWGGT | 1 cut(s) | 2208 |
| SfcI | CTRYAG | 6 cut(s) | 37, 1275, 2316, 2751, 2871, 3702 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 3033 |
| Sfr274I | CTCGAG | 1 cut(s) | 1097 |
| Sfr303I | CCGCGG | 2 cut(s) | 117, 3462 |
| SgrAI | CRCCGGYG | 2 cut(s) | 200, 328 |
| SgrBI | CCGCGG | 2 cut(s) | 117, 3462 |
| SinI | GGWCC | 9 cut(s) | 121, 157, 797, 1388, 2332, 2402, 3275, 3917, 4193 |
| SlaI | CTCGAG | 1 cut(s) | 1097 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2376, 2715 |
| SmlI | CTYRAG | 3 cut(s) | 1097, 3383, 3745 |
| SmoI | CTYRAG | 3 cut(s) | 1097, 3383, 3745 |
| SpeI | ACTAGT | 1 cut(s) | 1286 |
| SseBI | AGGCCT | 1 cut(s) | 4294 |
| SspI | AATATT | 3 cut(s) | 1264, 2137, 4325 |
| SstI | GAGCTC | 4 cut(s) | 9, 187, 771, 1023 |
| StuI | AGGCCT | 1 cut(s) | 4294 |
| StyI | CCWWGG | 4 cut(s) | 788, 2063, 2111, 2592 |
| TaaI | ACNGT | 9 cut(s) | 196, 955, 1003, 1118, 1764, 1771, 2529, 2587, 2997 |
| TaiI | ACGT | 8 cut(s) | 249, 318, 360, 1369, 1735, 1948, 2727, 3140 |
| TaqI | TCGA | 4 cut(s) | 375, 1098, 2161, 4166 |
| TaqII | GACCGA | 2 cut(s) | 1881, 4181 |
| TatI | WGTACW | 8 cut(s) | 542, 566, 1101, 2195, 2435, 2744, 2999, 3968 |
| TauI | GCSGC | 5 cut(s) | 175, 207, 210, 304, 3627 |
| Tru1I | TTAA | 7 cut(s) | 462, 755, 774, 1211, 1851, 3110, 3746 |
| Tru9I | TTAA | 7 cut(s) | 462, 755, 774, 1211, 1851, 3110, 3746 |
| TseFI | GTSAC | 4 cut(s) | 398, 1196, 2120, 3778 |
| Tsp45I | GTSAC | 4 cut(s) | 398, 1196, 2120, 3778 |
| TspGWI | ACGGA | 3 cut(s) | 301, 875, 2345 |
| Tth111I | GACNNNGTC | 2 cut(s) | 45, 2054 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3203 |
| Vha464I | CTTAAG | 1 cut(s) | 3745 |
| VneI | GTGCAC | 1 cut(s) | 1976 |
| VpaK11BI | GGWCC | 9 cut(s) | 121, 157, 797, 1388, 2332, 2402, 3275, 3917, 4193 |
| VspI | ATTAAT | 1 cut(s) | 774 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1238, 3732 |
| XbaI | TCTAGA | 1 cut(s) | 49 |
| XceI | RCATGY | 1 cut(s) | 624 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2384 |
| XhoI | CTCGAG | 1 cut(s) | 1097 |
| ZraI | GACGTC | 1 cut(s) | 3138 |
| Zsp2I | ATGCAT | 1 cut(s) | 3520 |