zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1437 |
| Acc65I | GGTACC | 1 cut(s) | 1412 |
| AccB1I | GGYRCC | 2 cut(s) | 363, 1412 |
| AccI | GTMKAC | 1 cut(s) | 49 |
| AccII | CGCG | 1 cut(s) | 951 |
| AclWI | GGATC | 1 cut(s) | 947 |
| AcoI | YGGCCR | 2 cut(s) | 138, 248 |
| AcsI | RAATTY | 3 cut(s) | 724, 1049, 1359 |
| AcyI | GRCGYC | 1 cut(s) | 836 |
| AfaI | GTAC | 3 cut(s) | 459, 929, 1414 |
| AfeI | AGCGCT | 1 cut(s) | 1099 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 1066 |
| AflIII | ACRYGT | 1 cut(s) | 485 |
| AgeI | ACCGGT | 1 cut(s) | 105 |
| AjnI | CCWGG | 2 cut(s) | 909, 1538 |
| Alw21I | GWGCWC | 1 cut(s) | 849 |
| Alw26I | GTCTC | 1 cut(s) | 982 |
| AlwI | GGATC | 1 cut(s) | 947 |
| Ama87I | CYCGRG | 1 cut(s) | 923 |
| Aor51HI | AGCGCT | 1 cut(s) | 1099 |
| AoxI | GGCC | 5 cut(s) | 30, 138, 244, 248, 405 |
| ApeKI | GCWGC | 4 cut(s) | 564, 665, 1122, 1241 |
| ApoI | RAATTY | 3 cut(s) | 724, 1049, 1359 |
| AseI | ATTAAT | 1 cut(s) | 1263 |
| AsiGI | ACCGGT | 1 cut(s) | 105 |
| Asp718I | GGTACC | 1 cut(s) | 1412 |
| AspLEI | GCGC | 2 cut(s) | 443, 1100 |
| AspS9I | GGNCC | 3 cut(s) | 41, 244, 1214 |
| AsuHPI | GGTGA | 3 cut(s) | 292, 890, 1382 |
| AvaI | CYCGRG | 1 cut(s) | 923 |
| AvaII | GGWCC | 2 cut(s) | 41, 1214 |
| AxyI | CCTNAGG | 1 cut(s) | 369 |
| BaeGI | GKGCMC | 1 cut(s) | 368 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 873, 906 |
| BanI | GGYRCC | 2 cut(s) | 363, 1412 |
| BanII | GRGCYC | 2 cut(s) | 541, 849 |
| BauI | CACGAG | 1 cut(s) | 341 |
| BbsI | GAAGAC | 4 cut(s) | 63, 312, 828, 1314 |
| Bbv12I | GWGCWC | 1 cut(s) | 849 |
| BbvI | GCAGC | 4 cut(s) | 576, 652, 1134, 1253 |
| BccI | CCATC | 6 cut(s) | 163, 187, 387, 391, 704, 1133 |
| BceAI | ACGGC | 1 cut(s) | 653 |
| BciT130I | CCWGG | 2 cut(s) | 911, 1540 |
| BclI | TGATCA | 1 cut(s) | 1372 |
| BcoDI | GTCTC | 1 cut(s) | 982 |
| BfoI | RGCGCY | 1 cut(s) | 1101 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 259 |
| BglII | AGATCT | 2 cut(s) | 751, 1473 |
| BisI | GCNGC | 9 cut(s) | 83, 120, 138, 251, 565, 666, 1123, 1242, 1280 |
| BlpI | GCTNAGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 9 cut(s) | 84, 121, 139, 252, 566, 667, 1124, 1243, 1281 |
| Bme1390I | CCNGG | 2 cut(s) | 911, 1540 |
| Bme18I | GGWCC | 2 cut(s) | 41, 1214 |
| BmeT110I | CYCGRG | 1 cut(s) | 923 |
| BmgT120I | GGNCC | 3 cut(s) | 41, 244, 1214 |
| BmiI | GGNNCC | 4 cut(s) | 43, 245, 365, 1414 |
| BmrFI | CCNGG | 2 cut(s) | 911, 1540 |
| BmrI | ACTGGG | 2 cut(s) | 39, 1359 |
| BmsI | GCATC | 4 cut(s) | 102, 279, 399, 1222 |
| BmuI | ACTGGG | 2 cut(s) | 39, 1359 |
| BpiI | GAAGAC | 4 cut(s) | 63, 312, 828, 1314 |
| BpmI | CTGGAG | 1 cut(s) | 1122 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 3 cut(s) | 29, 525, 1490 |
| Bsa29I | ATCGAT | 1 cut(s) | 1516 |
| BsaHI | GRCGYC | 1 cut(s) | 836 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 267, 653, 1077, 1538 |
| BsaWI | WCCGGW | 1 cut(s) | 105 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 1066 |
| Bse118I | RCCGGY | 3 cut(s) | 105, 115, 246 |
| Bse1I | ACTGG | 3 cut(s) | 45, 596, 1365 |
| Bse21I | CCTNAGG | 1 cut(s) | 369 |
| BseBI | CCWGG | 2 cut(s) | 911, 1540 |
| BseCI | ATCGAT | 1 cut(s) | 1516 |
| BseDI | CCNNGG | 5 cut(s) | 27, 267, 653, 1077, 1538 |
| BseGI | GGATG | 3 cut(s) | 174, 379, 1548 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 1066 |
| BseMII | CTCAG | 2 cut(s) | 32, 911 |
| BseNI | ACTGG | 3 cut(s) | 45, 596, 1365 |
| BseRI | GAGGAG | 3 cut(s) | 84, 87, 224 |
| BseSI | GKGCMC | 1 cut(s) | 368 |
| BseX3I | CGGCCG | 2 cut(s) | 138, 248 |
| BseXI | GCAGC | 4 cut(s) | 576, 652, 1134, 1253 |
| BseYI | CCCAGC | 1 cut(s) | 567 |
| BsgI | GTGCAG | 2 cut(s) | 753, 768 |
| Bsh1236I | CGCG | 1 cut(s) | 951 |
| Bsh1285I | CGRYCG | 5 cut(s) | 110, 141, 159, 251, 1516 |
| BshFI | GGCC | 5 cut(s) | 32, 140, 246, 250, 407 |
| BshNI | GGYRCC | 2 cut(s) | 363, 1412 |
| BshTI | ACCGGT | 1 cut(s) | 105 |
| BshVI | ATCGAT | 1 cut(s) | 1516 |
| BsiEI | CGRYCG | 5 cut(s) | 110, 141, 159, 251, 1516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 849 |
| BsiHKCI | CYCGRG | 1 cut(s) | 923 |
| BsiSI | CCGG | 3 cut(s) | 106, 116, 247 |
| BsiWI | CGTACG | 1 cut(s) | 457 |
| BslFI | GGGAC | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 1066 |
| BsmAI | GTCTC | 1 cut(s) | 982 |
| BsmFI | GGGAC | 1 cut(s) | 413 |
| BsmI | GAATGC | 2 cut(s) | 1235, 1552 |
| BsnI | GGCC | 5 cut(s) | 32, 140, 246, 250, 407 |
| BsoBI | CYCGRG | 1 cut(s) | 923 |
| Bsp1286I | GDGCHC | 3 cut(s) | 368, 541, 849 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 18 |
| Bsp19I | CCATGG | 1 cut(s) | 653 |
| Bsp68I | TCGCGA | 1 cut(s) | 951 |
| BspANI | GGCC | 5 cut(s) | 32, 140, 246, 250, 407 |
| BspCNI | CTCAG | 2 cut(s) | 31, 910 |
| BspDI | ATCGAT | 1 cut(s) | 1516 |
| BspFNI | CGCG | 1 cut(s) | 951 |
| BspLI | GGNNCC | 4 cut(s) | 43, 245, 365, 1414 |
| BspPI | GGATC | 1 cut(s) | 947 |
| BspT107I | GGYRCC | 2 cut(s) | 363, 1412 |
| BsrFI | RCCGGY | 3 cut(s) | 105, 115, 246 |
| BsrI | ACTGG | 3 cut(s) | 45, 596, 1365 |
| BssAI | RCCGGY | 3 cut(s) | 105, 115, 246 |
| BssECI | CCNNGG | 5 cut(s) | 27, 267, 653, 1077, 1538 |
| BssNAI | GTATAC | 1 cut(s) | 50 |
| BssNI | GRCGYC | 1 cut(s) | 836 |
| BssSI | CACGAG | 1 cut(s) | 341 |
| BssT1I | CCWWGG | 3 cut(s) | 267, 653, 1077 |
| Bst1107I | GTATAC | 1 cut(s) | 50 |
| Bst2BI | CACGAG | 1 cut(s) | 341 |
| Bst2UI | CCWGG | 2 cut(s) | 911, 1540 |
| Bst4CI | ACNGT | 5 cut(s) | 277, 332, 743, 829, 1117 |
| Bst6I | CTCTTC | 1 cut(s) | 584 |
| BstACI | GRCGYC | 1 cut(s) | 836 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 5 cut(s) | 15, 24, 117, 248, 264 |
| BstDEI | CTNAG | 3 cut(s) | 18, 369, 897 |
| BstDSI | CCRYGG | 1 cut(s) | 653 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1064 |
| BstF5I | GGATG | 3 cut(s) | 174, 379, 1548 |
| BstFNI | CGCG | 1 cut(s) | 951 |
| BstH2I | RGCGCY | 1 cut(s) | 1101 |
| BstHHI | GCGC | 2 cut(s) | 443, 1100 |
| BstMAI | GTCTC | 1 cut(s) | 982 |
| BstMCI | CGRYCG | 5 cut(s) | 110, 141, 159, 251, 1516 |
| BstNI | CCWGG | 2 cut(s) | 911, 1540 |
| BstNSI | RCATGY | 2 cut(s) | 266, 489 |
| BstSCI | CCNGG | 2 cut(s) | 909, 1538 |
| BstSLI | GKGCMC | 1 cut(s) | 368 |
| BstUI | CGCG | 1 cut(s) | 951 |
| BstV1I | GCAGC | 4 cut(s) | 576, 652, 1134, 1253 |
| BstV2I | GAAGAC | 4 cut(s) | 63, 312, 828, 1314 |
| BstX2I | RGATCY | 2 cut(s) | 751, 1473 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 799 |
| BstYI | RGATCY | 2 cut(s) | 751, 1473 |
| BstZ17I | GTATAC | 1 cut(s) | 50 |
| BstZI | CGGCCG | 2 cut(s) | 138, 248 |
| Bsu15I | ATCGAT | 1 cut(s) | 1516 |
| Bsu36I | CCTNAGG | 1 cut(s) | 369 |
| BsuRI | GGCC | 5 cut(s) | 32, 140, 246, 250, 407 |
| BsuTUI | ATCGAT | 1 cut(s) | 1516 |
| BtgI | CCRYGG | 1 cut(s) | 653 |
| BtsCI | GGATG | 3 cut(s) | 174, 379, 1548 |
| BtsIMutI | CAGTG | 1 cut(s) | 1372 |
| BtuMI | TCGCGA | 1 cut(s) | 951 |
| Cac8I | GCNNGC | 5 cut(s) | 15, 24, 117, 248, 264 |
| CfoI | GCGC | 2 cut(s) | 443, 1100 |
| Cfr10I | RCCGGY | 3 cut(s) | 105, 115, 246 |
| Cfr13I | GGNCC | 3 cut(s) | 41, 244, 1214 |
| ClaI | ATCGAT | 1 cut(s) | 1516 |
| CseI | GACGC | 1 cut(s) | 825 |
| Csp6I | GTAC | 3 cut(s) | 458, 928, 1413 |
| CspAI | ACCGGT | 1 cut(s) | 105 |
| CviAII | CATG | 7 cut(s) | 133, 263, 387, 486, 654, 1291, 1325 |
| CviQI | GTAC | 3 cut(s) | 458, 928, 1413 |
| DdeI | CTNAG | 3 cut(s) | 18, 369, 897 |
| DraI | TTTAAA | 2 cut(s) | 415, 640 |
| EaeI | YGGCCR | 2 cut(s) | 138, 248 |
| EagI | CGGCCG | 2 cut(s) | 138, 248 |
| Eam1104I | CTCTTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 584 |
| EciI | GGCGGA | 2 cut(s) | 81, 137 |
| Ecl136II | GAGCTC | 1 cut(s) | 847 |
| EclXI | CGGCCG | 2 cut(s) | 138, 248 |
| Eco130I | CCWWGG | 3 cut(s) | 267, 653, 1077 |
| Eco147I | AGGCCT | 1 cut(s) | 407 |
| Eco24I | GRGCYC | 2 cut(s) | 541, 849 |
| Eco47I | GGWCC | 2 cut(s) | 41, 1214 |
| Eco47III | AGCGCT | 1 cut(s) | 1099 |
| Eco52I | CGGCCG | 2 cut(s) | 138, 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 847 |
| Eco81I | CCTNAGG | 1 cut(s) | 369 |
| Eco88I | CYCGRG | 1 cut(s) | 923 |
| EcoICRI | GAGCTC | 1 cut(s) | 847 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1064 |
| EcoRI | GAATTC | 1 cut(s) | 1359 |
| EcoRII | CCWGG | 2 cut(s) | 909, 1538 |
| EcoT14I | CCWWGG | 3 cut(s) | 267, 653, 1077 |
| EcoT22I | ATGCAT | 2 cut(s) | 392, 1237 |
| EcoT38I | GRGCYC | 2 cut(s) | 541, 849 |
| ErhI | CCWWGG | 3 cut(s) | 267, 653, 1077 |
| FaeI | CATG | 7 cut(s) | 136, 266, 390, 489, 657, 1294, 1328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 833, 865 |
| FaqI | GGGAC | 1 cut(s) | 413 |
| FatI | CATG | 7 cut(s) | 132, 262, 386, 485, 653, 1290, 1324 |
| FauI | CCCGC | 5 cut(s) | 155, 178, 208, 234, 390 |
| FbaI | TGATCA | 1 cut(s) | 1372 |
| FblI | GTMKAC | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 9 cut(s) | 83, 120, 138, 251, 565, 666, 1123, 1242, 1280 |
| FokI | GGATG | 3 cut(s) | 181, 366, 1555 |
| FriOI | GRGCYC | 2 cut(s) | 541, 849 |
| FseI | GGCCGGCC | 1 cut(s) | 250 |
| Fsp4HI | GCNGC | 9 cut(s) | 83, 120, 138, 251, 565, 666, 1123, 1242, 1280 |
| GlaI | GCGC | 2 cut(s) | 442, 1099 |
| GluI | GCNGC | 9 cut(s) | 83, 120, 138, 251, 565, 666, 1123, 1242, 1280 |
| GsaI | CCCAGC | 1 cut(s) | 571 |
| GsuI | CTGGAG | 1 cut(s) | 1122 |
| HaeII | RGCGCY | 1 cut(s) | 1101 |
| HaeIII | GGCC | 5 cut(s) | 32, 140, 246, 250, 407 |
| HapII | CCGG | 3 cut(s) | 106, 116, 247 |
| HgaI | GACGC | 1 cut(s) | 825 |
| HhaI | GCGC | 2 cut(s) | 443, 1100 |
| Hin1I | GRCGYC | 1 cut(s) | 836 |
| Hin1II | CATG | 7 cut(s) | 136, 266, 390, 489, 657, 1294, 1328 |
| Hin6I | GCGC | 2 cut(s) | 441, 1098 |
| HinP1I | GCGC | 2 cut(s) | 441, 1098 |
| HincII | GTYRAC | 2 cut(s) | 739, 1315 |
| HindII | GTYRAC | 2 cut(s) | 739, 1315 |
| HindIII | AAGCTT | 2 cut(s) | 1040, 1466 |
| HinfI | GANTC | 5 cut(s) | 595, 689, 983, 990, 1297 |
| HpaII | CCGG | 3 cut(s) | 106, 116, 247 |
| HphI | GGTGA | 3 cut(s) | 292, 890, 1382 |
| Hpy166II | GTNNAC | 4 cut(s) | 50, 589, 739, 1315 |
| Hpy188I | TCNGA | 2 cut(s) | 628, 1269 |
| Hpy188III | TCNNGA | 7 cut(s) | 755, 950, 987, 1046, 1229, 1477, 1528 |
| Hpy8I | GTNNAC | 4 cut(s) | 50, 589, 739, 1315 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 332 |
| HpyAV | CCTTC | 5 cut(s) | 43, 175, 418, 527, 1324 |
| HpyCH4III | ACNGT | 5 cut(s) | 277, 332, 743, 829, 1117 |
| HpyCH4IV | ACGT | 4 cut(s) | 309, 516, 1311, 1560 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 369, 897 |
| HpySE526I | ACGT | 4 cut(s) | 309, 516, 1311, 1560 |
| Hsp92I | GRCGYC | 1 cut(s) | 836 |
| Hsp92II | CATG | 7 cut(s) | 136, 266, 390, 489, 657, 1294, 1328 |
| HspAI | GCGC | 2 cut(s) | 441, 1098 |
| KpnI | GGTACC | 1 cut(s) | 1416 |
| KroI | GCCGGC | 2 cut(s) | 115, 246 |
| KroNI | GCCGGC | 2 cut(s) | 117, 248 |
| Ksp22I | TGATCA | 1 cut(s) | 1372 |
| LmnI | GCTCC | 2 cut(s) | 4, 844 |
| Lsp1109I | GCAGC | 4 cut(s) | 576, 652, 1134, 1253 |
| LweI | GCATC | 4 cut(s) | 102, 279, 399, 1222 |
| MaeII | ACGT | 4 cut(s) | 309, 516, 1311, 1560 |
| MaeIII | GTNAC | 3 cut(s) | 1022, 1283, 1405 |
| MfeI | CAATTG | 2 cut(s) | 1344, 1506 |
| MflI | RGATCY | 2 cut(s) | 751, 1473 |
| MhlI | GDGCHC | 3 cut(s) | 368, 541, 849 |
| MluCI | AATT | 9 cut(s) | 433, 507, 724, 972, 1049, 1319, 1344, 1359, 1506 |
| MlyI | GAGTC | 1 cut(s) | 984 |
| Mph1103I | ATGCAT | 2 cut(s) | 392, 1237 |
| MroNI | GCCGGC | 2 cut(s) | 115, 246 |
| MseI | TTAA | 7 cut(s) | 414, 620, 639, 1037, 1110, 1263, 1484 |
| MspA1I | CMGCKG | 1 cut(s) | 567 |
| MspI | CCGG | 3 cut(s) | 106, 116, 247 |
| MspR9I | CCNGG | 2 cut(s) | 911, 1540 |
| MunI | CAATTG | 2 cut(s) | 1344, 1506 |
| Mva1269I | GAATGC | 2 cut(s) | 1235, 1552 |
| MvaI | CCWGG | 2 cut(s) | 911, 1540 |
| MvnI | CGCG | 1 cut(s) | 951 |
| NaeI | GCCGGC | 2 cut(s) | 117, 248 |
| NcoI | CCATGG | 1 cut(s) | 653 |
| NgoMIV | GCCGGC | 2 cut(s) | 115, 246 |
| NlaIII | CATG | 7 cut(s) | 136, 266, 390, 489, 657, 1294, 1328 |
| NlaIV | GGNNCC | 4 cut(s) | 43, 245, 365, 1414 |
| NmeAIII | GCCGAG | 1 cut(s) | 8 |
| NmuCI | GTSAC | 2 cut(s) | 1022, 1405 |
| NruI | TCGCGA | 1 cut(s) | 951 |
| NsiI | ATGCAT | 2 cut(s) | 392, 1237 |
| NspI | RCATGY | 2 cut(s) | 266, 489 |
| PaeI | GCATGC | 1 cut(s) | 266 |
| PaeR7I | CTCGAG | 1 cut(s) | 923 |
| PceI | AGGCCT | 1 cut(s) | 407 |
| PciI | ACATGT | 1 cut(s) | 485 |
| PctI | GAATGC | 2 cut(s) | 1235, 1552 |
| PdiI | GCCGGC | 2 cut(s) | 117, 248 |
| PfeI | GAWTC | 4 cut(s) | 595, 689, 983, 1297 |
| Pfl23II | CGTACG | 1 cut(s) | 457 |
| PinAI | ACCGGT | 1 cut(s) | 105 |
| PkrI | GCNGC | 9 cut(s) | 84, 121, 139, 252, 566, 667, 1124, 1243, 1281 |
| Ple19I | CGATCG | 2 cut(s) | 159, 1516 |
| PleI | GAGTC | 1 cut(s) | 984 |
| PpsI | GAGTC | 1 cut(s) | 984 |
| PscI | ACATGT | 1 cut(s) | 485 |
| PshBI | ATTAAT | 1 cut(s) | 1263 |
| PsiI | TTATAA | 1 cut(s) | 1437 |
| Psp124BI | GAGCTC | 1 cut(s) | 849 |
| Psp6I | CCWGG | 2 cut(s) | 909, 1538 |
| PspFI | CCCAGC | 1 cut(s) | 567 |
| PspGI | CCWGG | 2 cut(s) | 909, 1538 |
| PspLI | CGTACG | 1 cut(s) | 457 |
| PspN4I | GGNNCC | 4 cut(s) | 43, 245, 365, 1414 |
| PspPI | GGNCC | 3 cut(s) | 41, 244, 1214 |
| PspXI | VCTCGAGB | 1 cut(s) | 923 |
| PsuI | RGATCY | 2 cut(s) | 751, 1473 |
| PvuI | CGATCG | 2 cut(s) | 159, 1516 |
| PvuII | CAGCTG | 1 cut(s) | 567 |
| RigI | GGCCGGCC | 1 cut(s) | 250 |
| RruI | TCGCGA | 1 cut(s) | 951 |
| RsaI | GTAC | 3 cut(s) | 459, 929, 1414 |
| RsaNI | GTAC | 3 cut(s) | 458, 928, 1413 |
| SacI | GAGCTC | 1 cut(s) | 849 |
| SaqAI | TTAA | 7 cut(s) | 414, 620, 639, 1037, 1110, 1263, 1484 |
| SatI | GCNGC | 9 cut(s) | 83, 120, 138, 251, 565, 666, 1123, 1242, 1280 |
| Sau96I | GGNCC | 3 cut(s) | 41, 244, 1214 |
| SchI | GAGTC | 1 cut(s) | 984 |
| ScrFI | CCNGG | 2 cut(s) | 911, 1540 |
| SduI | GDGCHC | 3 cut(s) | 368, 541, 849 |
| SfaNI | GCATC | 4 cut(s) | 102, 279, 399, 1222 |
| Sfr274I | CTCGAG | 1 cut(s) | 923 |
| SinI | GGWCC | 2 cut(s) | 41, 1214 |
| SlaI | CTCGAG | 1 cut(s) | 923 |
| SmlI | CTYRAG | 4 cut(s) | 8, 540, 923, 1469 |
| SmoI | CTYRAG | 4 cut(s) | 8, 540, 923, 1469 |
| SphI | GCATGC | 1 cut(s) | 266 |
| Sse9I | AATT | 9 cut(s) | 433, 507, 724, 972, 1049, 1319, 1344, 1359, 1506 |
| SseBI | AGGCCT | 1 cut(s) | 407 |
| SstI | GAGCTC | 1 cut(s) | 849 |
| StuI | AGGCCT | 1 cut(s) | 407 |
| StyD4I | CCNGG | 2 cut(s) | 909, 1538 |
| StyI | CCWWGG | 3 cut(s) | 267, 653, 1077 |
| TaaI | ACNGT | 5 cut(s) | 277, 332, 743, 829, 1117 |
| TaiI | ACGT | 4 cut(s) | 312, 519, 1314, 1563 |
| TaqI | TCGA | 6 cut(s) | 110, 327, 419, 924, 986, 1516 |
| TasI | AATT | 9 cut(s) | 433, 507, 724, 972, 1049, 1319, 1344, 1359, 1506 |
| TatI | WGTACW | 1 cut(s) | 927 |
| TauI | GCSGC | 5 cut(s) | 85, 122, 140, 253, 1282 |
| TfiI | GAWTC | 4 cut(s) | 595, 689, 983, 1297 |
| Tru1I | TTAA | 7 cut(s) | 414, 620, 639, 1037, 1110, 1263, 1484 |
| Tru9I | TTAA | 7 cut(s) | 414, 620, 639, 1037, 1110, 1263, 1484 |
| TscAI | CASTG | 1 cut(s) | 1372 |
| TseFI | GTSAC | 2 cut(s) | 1022, 1405 |
| TseI | GCWGC | 4 cut(s) | 564, 665, 1122, 1241 |
| Tsp45I | GTSAC | 2 cut(s) | 1022, 1405 |
| TspDTI | ATGAA | 3 cut(s) | 307, 675, 1559 |
| TspGWI | ACGGA | 1 cut(s) | 75 |
| TspRI | CASTG | 1 cut(s) | 1372 |
| VpaK11BI | GGWCC | 2 cut(s) | 41, 1214 |
| VspI | ATTAAT | 1 cut(s) | 1263 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1064 |
| XapI | RAATTY | 3 cut(s) | 724, 1049, 1359 |
| XceI | RCATGY | 2 cut(s) | 266, 489 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 274 |
| XhoI | CTCGAG | 1 cut(s) | 923 |
| XmiI | GTMKAC | 1 cut(s) | 49 |
| Zsp2I | ATGCAT | 2 cut(s) | 392, 1237 |