Rorug02G0084100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007634
Physical Location & Seq
Reverse (-)
6760300 .. 6763429
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0084100.1

Sequence Viewer

Length: 1218 bp
ATGTCTAATTGCGACGAACCCATGGAGGAGTACGCGGAGCCCGTCGAAGAAACTAATGGTCATTCGTTTTACAGAGTGAAACAACGGTTAAAAGATCGATCTAAGAAAGTGGCGCAAACGAAAGAGATTTTGTCTAAGCAAGCGGTTCAGACCAAGGAGATCCTGTCAAAACAGGCTGTGAAGATCGCTAAACAAGCTGAAGAACATGAAAAGTTCATCAATAAGGTGACGCATCTTGTTGGGGTGCTTGGGTTTGGTGCCTTTTGCTTTCTGTTAGGAGCCAGACCTCAAGATACTCGATATGTATATTGTTTGTTCTATTTCATCTTCGTTCCTCTTCGCTGGATATACTATCGGTACAAGAAATGGCATTACTACCTCTTGGACTTCTGCTACTACGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTGATTGTTTGGCGTTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATTTGCAGCCATGCATCCTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAGAACTCTCGAAGAAGGCACAAAAGGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTACATTGTGCTCCAAGCCATATTTACTGTGGCTACCATGGCACTCACAGTCCCTATCTTCTTGTCGTATGAATTACATGTAGGTTTCCAGATCCTCAAGGTCTCTGCATCTGTTTGGAATGGAGGAAGCTTTTTACTTGAGGTAATGCCTAGACAAGTGATTCTCAAGGAGAAGAAGAAGAAAGCAGAAGTACAACCAACAGAAACACAGGTAGACCAAATTTTAGAAGTGCAGCCAATACAAACGCAGCTAGATCAATCCTTAAACCATGACGCAGCTGCCAACAATTCTGTTGAAATTGTTGAGGCTTCCCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GYF Plus-3 SWIB zf-CCCH

Protein Analysis

405

Amino Acids

47.3

Weight (kDa)

8.99

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 75 - 184 2.6e-36 Protein of unknown function (DUF2838)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
AccB1I GGYRCC 2 cut(s) 257, 706
AccI GTMKAC 1 cut(s) 1110
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 35, 143, 864
AclI AACGTT 1 cut(s) 759
AclWI GGATC 8 cut(s) 154, 599, 612, 646, 782, 795, 885, 982
AcsI RAATTY 1 cut(s) 1116
AcuI CTGAAG 3 cut(s) 219, 654, 813
AfaI GTAC 4 cut(s) 32, 359, 899, 1089
AflII CTTAAG 1 cut(s) 859
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 1 cut(s) 1193
AjnI CCWGG 2 cut(s) 571, 711
AluBI AGCT 7 cut(s) 197, 519, 653, 736, 1026, 1147, 1175
AluI AGCT 7 cut(s) 197, 519, 653, 736, 1026, 1147, 1175
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 1 cut(s) 1003
AlwI GGATC 8 cut(s) 154, 599, 612, 646, 782, 795, 885, 982
AoxI GGCC 2 cut(s) 482, 659
ApeKI GCWGC 6 cut(s) 620, 733, 1129, 1144, 1172, 1175
ApoI RAATTY 1 cut(s) 1116
AspLEI GCGC 2 cut(s) 115, 858
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 2 cut(s) 499, 711
BamHI GGATCC 2 cut(s) 604, 787
BanI GGYRCC 2 cut(s) 257, 706
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 909
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
BccI CCATC 1 cut(s) 591
BciT130I CCWGG 2 cut(s) 573, 713
BcoDI GTCTC 1 cut(s) 1003
BfaI CTAG 2 cut(s) 1047, 1148
BfoI RGCGCY 1 cut(s) 859
BfrI CTTAAG 1 cut(s) 859
BisI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
BlsI GCNGC 6 cut(s) 622, 735, 1131, 1146, 1174, 1177
Bme1390I CCNGG 2 cut(s) 573, 713
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 7 cut(s) 39, 259, 280, 483, 606, 708, 789
BmrFI CCNGG 2 cut(s) 573, 713
BmsI GCATC 3 cut(s) 241, 637, 1013
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 4 cut(s) 273, 977, 1046, 1055
Bsa29I ATCGAT 2 cut(s) 97, 886
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 1003
BsaJI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 573, 713
BseCI ATCGAT 2 cut(s) 97, 886
BseDI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 882
BseMII CTCAG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 499, 711
BseXI GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
BsgI GTGCAG 1 cut(s) 1148
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 484, 661
BshNI GGYRCC 2 cut(s) 257, 706
BshVI ATCGAT 2 cut(s) 97, 886
BsiHKAI GWGCWC 1 cut(s) 909
BslFI GGGAC 1 cut(s) 932
BsmAI GTCTC 1 cut(s) 1003
BsmFI GGGAC 1 cut(s) 932
BsnI GGCC 2 cut(s) 484, 661
Bso31I GGTCTC 1 cut(s) 1003
Bsp1286I GDGCHC 4 cut(s) 42, 499, 711, 909
Bsp1407I TGTACA 1 cut(s) 897
Bsp19I CCATGG 2 cut(s) 21, 933
BspACI CCGC 3 cut(s) 35, 143, 864
BspANI GGCC 2 cut(s) 484, 661
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 2 cut(s) 97, 886
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 7 cut(s) 39, 259, 280, 483, 606, 708, 789
BspPI GGATC 8 cut(s) 154, 599, 612, 646, 782, 795, 885, 982
BspT107I GGYRCC 2 cut(s) 257, 706
BspTI CTTAAG 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 1003
BsrGI TGTACA 1 cut(s) 897
BssECI CCNNGG 6 cut(s) 21, 153, 437, 572, 711, 933
BssT1I CCWWGG 4 cut(s) 21, 153, 437, 933
Bst2UI CCWGG 2 cut(s) 573, 713
Bst4CI ACNGT 3 cut(s) 87, 925, 946
Bst6I CTCTTC 1 cut(s) 342
BstAFI CTTAAG 1 cut(s) 859
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 897
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 102, 135, 477
BstDSI CCRYGG 2 cut(s) 21, 933
BstF5I GGATG 1 cut(s) 628
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 2 cut(s) 115, 858
BstMAI GTCTC 1 cut(s) 1003
BstMWI GCNNNNNNNGC 4 cut(s) 194, 617, 836, 935
BstNI CCWGG 2 cut(s) 573, 713
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 2 cut(s) 571, 711
BstSLI GKGCMC 2 cut(s) 499, 711
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
BstX2I RGATCY 5 cut(s) 159, 604, 638, 787, 987
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 5 cut(s) 159, 604, 638, 787, 987
Bsu15I ATCGAT 2 cut(s) 97, 886
BsuRI GGCC 2 cut(s) 484, 661
BsuTUI ATCGAT 2 cut(s) 97, 886
BtgI CCRYGG 2 cut(s) 21, 933
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 2 cut(s) 497, 556
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 115, 858
Cfr13I GGNCC 1 cut(s) 482
ClaI ATCGAT 2 cut(s) 97, 886
CseI GACGC 2 cut(s) 238, 1178
Csp6I GTAC 4 cut(s) 31, 358, 898, 1088
CviAII CATG 9 cut(s) 22, 206, 457, 492, 625, 693, 934, 974, 1166
CviQI GTAC 4 cut(s) 31, 358, 898, 1088
DdeI CTNAG 3 cut(s) 102, 135, 477
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 4 cut(s) 21, 153, 437, 933
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 1003
Eco57I CTGAAG 3 cut(s) 219, 654, 813
EcoRII CCWGG 2 cut(s) 571, 711
EcoT14I CCWWGG 4 cut(s) 21, 153, 437, 933
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 4 cut(s) 21, 153, 437, 933
FaeI CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FaqI GGGAC 1 cut(s) 932
FatI CATG 9 cut(s) 21, 205, 456, 491, 624, 692, 933, 973, 1165
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
FokI GGATG 1 cut(s) 615
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
FspBI CTAG 2 cut(s) 1047, 1148
GlaI GCGC 2 cut(s) 114, 857
GluI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
HaeII RGCGCY 1 cut(s) 859
HaeIII GGCC 2 cut(s) 484, 661
HgaI GACGC 2 cut(s) 238, 1178
HhaI GCGC 2 cut(s) 115, 858
Hin1II CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
Hin6I GCGC 2 cut(s) 113, 856
HinP1I GCGC 2 cut(s) 113, 856
HincII GTYRAC 2 cut(s) 421, 757
HindII GTYRAC 2 cut(s) 421, 757
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 1 cut(s) 1057
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 5 cut(s) 421, 533, 690, 757, 1111
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 6 cut(s) 290, 556, 632, 791, 820, 985
Hpy8I GTNNAC 5 cut(s) 421, 533, 690, 757, 1111
Hpy99I CGWCG 2 cut(s) 17, 47
HpyAV CCTTC 3 cut(s) 434, 629, 820
HpyCH4III ACNGT 3 cut(s) 87, 925, 946
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 4 cut(s) 620, 628, 1004, 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 617, 836, 935
HpyF3I CTNAG 3 cut(s) 102, 135, 477
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
HspAI GCGC 2 cut(s) 113, 856
LmnI GCTCC 3 cut(s) 37, 278, 912
Lsp1109I GCAGC 6 cut(s) 632, 745, 1141, 1156, 1162, 1184
LweI GCATC 3 cut(s) 241, 637, 1013
MaeI CTAG 2 cut(s) 1047, 1148
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 1 cut(s) 226
MflI RGATCY 5 cut(s) 159, 604, 638, 787, 987
MhlI GDGCHC 4 cut(s) 42, 499, 711, 909
MluCI AATT 7 cut(s) 7, 542, 844, 968, 1116, 1183, 1194
Mph1103I ATGCAT 1 cut(s) 630
MseI TTAA 4 cut(s) 89, 782, 860, 1160
MslI CAYNNNNRTG 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 1175
MspCI CTTAAG 1 cut(s) 859
MspR9I CCNGG 2 cut(s) 573, 713
MvaI CCWGG 2 cut(s) 573, 713
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 194, 617, 836, 935
NcoI CCATGG 2 cut(s) 21, 933
NlaIII CATG 9 cut(s) 25, 209, 460, 495, 628, 696, 937, 977, 1169
NlaIV GGNNCC 7 cut(s) 39, 259, 280, 483, 606, 708, 789
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 1 cut(s) 977
PciI ACATGT 1 cut(s) 973
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 1057
PkrI GCNGC 6 cut(s) 622, 735, 1131, 1146, 1174, 1177
PscI ACATGT 1 cut(s) 973
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 571, 711
PspGI CCWGG 2 cut(s) 571, 711
PspN4I GGNNCC 7 cut(s) 39, 259, 280, 483, 606, 708, 789
PspPI GGNCC 1 cut(s) 482
PsuI RGATCY 5 cut(s) 159, 604, 638, 787, 987
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 4 cut(s) 32, 359, 899, 1089
RsaNI GTAC 4 cut(s) 31, 358, 898, 1088
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 4 cut(s) 89, 782, 860, 1160
SatI GCNGC 6 cut(s) 621, 734, 1130, 1145, 1173, 1176
Sau96I GGNCC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 573, 713
SduI GDGCHC 4 cut(s) 42, 499, 711, 909
SfaNI GCATC 3 cut(s) 241, 637, 1013
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 5 cut(s) 288, 859, 992, 1034, 1061
SmoI CTYRAG 5 cut(s) 288, 859, 992, 1034, 1061
Sse9I AATT 7 cut(s) 7, 542, 844, 968, 1116, 1183, 1194
SsiI CCGC 3 cut(s) 35, 143, 864
SspMI CTAG 2 cut(s) 1047, 1148
StyD4I CCNGG 2 cut(s) 571, 711
StyI CCWWGG 4 cut(s) 21, 153, 437, 933
TaaI ACNGT 3 cut(s) 87, 925, 946
TaiI ACGT 1 cut(s) 762
TaqI TCGA 6 cut(s) 45, 97, 298, 595, 821, 886
TasI AATT 7 cut(s) 7, 542, 844, 968, 1116, 1183, 1194
TatI WGTACW 2 cut(s) 897, 1087
TfiI GAWTC 1 cut(s) 1057
Tru1I TTAA 4 cut(s) 89, 782, 860, 1160
Tru9I TTAA 4 cut(s) 89, 782, 860, 1160
TscAI CASTG 2 cut(s) 504, 556
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 6 cut(s) 620, 733, 1129, 1144, 1172, 1175
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 6 cut(s) 205, 222, 313, 445, 459, 981
TspRI CASTG 2 cut(s) 504, 556
Vha464I CTTAAG 1 cut(s) 859
XapI RAATTY 1 cut(s) 1116
XceI RCATGY 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 1110
XspI CTAG 2 cut(s) 1047, 1148
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.