zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18090 AT2G18090 AT3G51120 |
| fragaria_vesca | FvH4_1g12170 FvH4_1g12170 |
| malus_domestica | MD02G1135700.v1.1 MD15G1249200.v1.1 |
| prunus_persica | Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 Prupe.7G165000_v2.0.a1 |
| pyrus_communis | pycom02g10700 pycom15g21940 |
| rosa_chinensis | RchiOBHm_Chr2g0099921 RchiOBHm_Chr2g0099931 |
| rosa_laevigata | RLG00000016923 |
| rosa_multiflora | Rmu_sc0008864.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142730 |
| rosa_rugosa | Rorug02G0084000 Rorug02G0084100 |
| rosa_samantha | Rh2AG133000 Rh2BG136500 Rh2CG138100 Rh2DG138500 |
| rosa_wichuraiana | Rw2G010350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1560 |
| Acc65I | GGTACC | 1 cut(s) | 1535 |
| AccB1I | GGYRCC | 2 cut(s) | 1535, 3274 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3161 |
| AccBSI | CCGCTC | 1 cut(s) | 258 |
| AccI | GTMKAC | 1 cut(s) | 49 |
| AccII | CGCG | 2 cut(s) | 530, 1812 |
| AccIII | TCCGGA | 1 cut(s) | 3283 |
| AclWI | GGATC | 8 cut(s) | 1070, 1345, 1952, 1964, 1977, 2909, 2922, 3405 |
| AcoI | YGGCCR | 5 cut(s) | 248, 2475, 2662, 2983, 3232 |
| AcsI | RAATTY | 9 cut(s) | 811, 1172, 1420, 1482, 1938, 2125, 2263, 2908, 3419 |
| AcuI | CTGAAG | 7 cut(s) | 765, 963, 1965, 2007, 2985, 3483, 4123 |
| AdeI | CACNNNGTG | 1 cut(s) | 920 |
| AflII | CTTAAG | 1 cut(s) | 3169 |
| AflIII | ACRYGT | 1 cut(s) | 572 |
| AgeI | ACCGGT | 1 cut(s) | 105 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 900, 932, 956, 988, 2894, 2926 |
| Alw21I | GWGCWC | 4 cut(s) | 972, 3248, 3620, 3698 |
| Alw26I | GTCTC | 5 cut(s) | 3010, 3159, 3370, 3473, 3813 |
| AlwI | GGATC | 8 cut(s) | 1070, 1345, 1952, 1964, 1977, 2909, 2922, 3405 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 821, 1900 |
| Aor13HI | TCCGGA | 1 cut(s) | 3283 |
| ApeKI | GCWGC | 6 cut(s) | 289, 470, 651, 752, 1364, 4270 |
| ApoI | RAATTY | 9 cut(s) | 811, 1172, 1420, 1482, 1938, 2125, 2263, 2908, 3419 |
| AseI | ATTAAT | 2 cut(s) | 1386, 2151 |
| AsiGI | ACCGGT | 1 cut(s) | 105 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3957 |
| Asp718I | GGTACC | 1 cut(s) | 1535 |
| AspLEI | GCGC | 3 cut(s) | 530, 1039, 1926 |
| AspS9I | GGNCC | 6 cut(s) | 244, 1030, 2347, 2369, 2694, 3998 |
| AsuC2I | CCSGG | 1 cut(s) | 178 |
| AvaII | GGWCC | 5 cut(s) | 1030, 2347, 2369, 2694, 3998 |
| AxyI | CCTNAGG | 1 cut(s) | 369 |
| BaeGI | GKGCMC | 3 cut(s) | 2415, 3277, 4302 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3541, 3574 |
| BalI | TGGCCA | 4 cut(s) | 2477, 2664, 2985, 3234 |
| BamHI | GGATCC | 2 cut(s) | 1969, 2914 |
| BanI | GGYRCC | 2 cut(s) | 1535, 3274 |
| BanII | GRGCYC | 4 cut(s) | 628, 972, 3620, 3698 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3166, 3198 |
| BauI | CACGAG | 3 cut(s) | 341, 1448, 4060 |
| BbsI | GAAGAC | 5 cut(s) | 63, 312, 951, 1437, 1995 |
| Bbv12I | GWGCWC | 4 cut(s) | 972, 3248, 3620, 3698 |
| BbvI | GCAGC | 6 cut(s) | 301, 457, 663, 739, 1376, 4282 |
| BceAI | ACGGC | 3 cut(s) | 291, 346, 3061 |
| BclI | TGATCA | 4 cut(s) | 1273, 1495, 2425, 2893 |
| BcnI | CCSGG | 1 cut(s) | 178 |
| BcoDI | GTCTC | 5 cut(s) | 3010, 3159, 3370, 3473, 3813 |
| BfaI | CTAG | 4 cut(s) | 879, 1488, 2724, 3255 |
| BfmI | CTRYAG | 6 cut(s) | 37, 829, 1892, 2283, 3339, 3567 |
| BfoI | RGCGCY | 1 cut(s) | 1040 |
| BfrI | CTTAAG | 1 cut(s) | 3169 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 182, 259, 2991 |
| BglII | AGATCT | 5 cut(s) | 1596, 1638, 2042, 3451, 3779 |
| BlpI | GCTNAGC | 1 cut(s) | 18 |
| Bme18I | GGWCC | 5 cut(s) | 1030, 2347, 2369, 2694, 3998 |
| BmgT120I | GGNCC | 6 cut(s) | 244, 1030, 2347, 2369, 2694, 3998 |
| BmrI | ACTGGG | 2 cut(s) | 39, 3310 |
| BmuI | ACTGGG | 2 cut(s) | 39, 3310 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3303 |
| BpiI | GAAGAC | 5 cut(s) | 63, 312, 951, 1437, 1995 |
| BpmI | CTGGAG | 6 cut(s) | 110, 2019, 2634, 3034, 3262, 3306 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1871 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 6 cut(s) | 29, 612, 919, 1067, 1613, 2916 |
| BpuMI | CCSGG | 1 cut(s) | 178 |
| BsaI | GGTCTC | 1 cut(s) | 3010 |
| BsaWI | WCCGGW | 2 cut(s) | 105, 3283 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bse118I | RCCGGY | 4 cut(s) | 105, 115, 246, 3964 |
| Bse21I | CCTNAGG | 1 cut(s) | 369 |
| Bse3DI | GCAATG | 5 cut(s) | 1749, 1883, 2270, 3166, 3480 |
| BseAI | TCCGGA | 1 cut(s) | 3283 |
| BseMI | GCAATG | 5 cut(s) | 1749, 1883, 2270, 3166, 3480 |
| BseMII | CTCAG | 6 cut(s) | 32, 1034, 1717, 1922, 2238, 2552 |
| BseRI | GAGGAG | 2 cut(s) | 224, 2889 |
| BseSI | GKGCMC | 3 cut(s) | 2415, 3277, 4302 |
| BseX3I | CGGCCG | 1 cut(s) | 248 |
| BseXI | GCAGC | 6 cut(s) | 301, 457, 663, 739, 1376, 4282 |
| BseYI | CCCAGC | 4 cut(s) | 654, 2408, 2608, 3583 |
| BsgI | GTGCAG | 4 cut(s) | 855, 2685, 3117, 3867 |
| Bsh1236I | CGCG | 2 cut(s) | 530, 1812 |
| Bsh1285I | CGRYCG | 4 cut(s) | 110, 159, 251, 1816 |
| BshNI | GGYRCC | 2 cut(s) | 1535, 3274 |
| BshTI | ACCGGT | 1 cut(s) | 105 |
| BsiEI | CGRYCG | 4 cut(s) | 110, 159, 251, 1816 |
| BsiHKAI | GWGCWC | 4 cut(s) | 972, 3248, 3620, 3698 |
| BsiSI | CCGG | 6 cut(s) | 106, 116, 177, 247, 3284, 3965 |
| BslFI | GGGAC | 4 cut(s) | 413, 2130, 3126, 3877 |
| BsmAI | GTCTC | 5 cut(s) | 3010, 3159, 3370, 3473, 3813 |
| BsmFI | GGGAC | 4 cut(s) | 413, 2130, 3126, 3877 |
| BsmI | GAATGC | 3 cut(s) | 1673, 2003, 2299 |
| Bso31I | GGTCTC | 1 cut(s) | 3010 |
| Bsp1286I | GDGCHC | 8 cut(s) | 628, 972, 2415, 3248, 3277, 3620, 3698, 4302 |
| Bsp13I | TCCGGA | 1 cut(s) | 3283 |
| Bsp1407I | TGTACA | 2 cut(s) | 494, 3787 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 18 |
| Bsp19I | CCATGG | 2 cut(s) | 3642, 3720 |
| Bsp68I | TCGCGA | 1 cut(s) | 1812 |
| BspCNI | CTCAG | 6 cut(s) | 31, 1033, 1716, 1923, 2239, 2551 |
| BspEI | TCCGGA | 1 cut(s) | 3283 |
| BspFNI | CGCG | 2 cut(s) | 530, 1812 |
| BspHI | TCATGA | 2 cut(s) | 1648, 3513 |
| BspPI | GGATC | 8 cut(s) | 1070, 1345, 1952, 1964, 1977, 2909, 2922, 3405 |
| BspT107I | GGYRCC | 2 cut(s) | 1535, 3274 |
| BspTI | CTTAAG | 1 cut(s) | 3169 |
| BspTNI | GGTCTC | 1 cut(s) | 3010 |
| BsrBI | CCGCTC | 1 cut(s) | 258 |
| BsrDI | GCAATG | 5 cut(s) | 1749, 1883, 2270, 3166, 3480 |
| BsrFI | RCCGGY | 4 cut(s) | 105, 115, 246, 3964 |
| BsrGI | TGTACA | 2 cut(s) | 494, 3787 |
| BssAI | RCCGGY | 4 cut(s) | 105, 115, 246, 3964 |
| BssNAI | GTATAC | 1 cut(s) | 50 |
| BssSI | CACGAG | 3 cut(s) | 341, 1448, 4060 |
| BssT1I | CCWWGG | 6 cut(s) | 132, 1200, 2078, 3642, 3720, 4006 |
| Bst1107I | GTATAC | 1 cut(s) | 50 |
| Bst2BI | CACGAG | 3 cut(s) | 341, 1448, 4060 |
| Bst6I | CTCTTC | 2 cut(s) | 671, 2631 |
| BstAFI | CTTAAG | 1 cut(s) | 3169 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 363, 1754 |
| BstAUI | TGTACA | 2 cut(s) | 494, 3787 |
| BstC8I | GCNNGC | 9 cut(s) | 15, 24, 117, 248, 260, 1246, 3232, 4089, 4298 |
| BstDEI | CTNAG | 9 cut(s) | 18, 369, 522, 1020, 1703, 1871, 1931, 2247, 2538 |
| BstDSI | CCRYGG | 2 cut(s) | 3642, 3720 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3600 |
| BstFNI | CGCG | 2 cut(s) | 530, 1812 |
| BstH2I | RGCGCY | 1 cut(s) | 1040 |
| BstHHI | GCGC | 3 cut(s) | 530, 1039, 1926 |
| BstMAI | GTCTC | 5 cut(s) | 3010, 3159, 3370, 3473, 3813 |
| BstMCI | CGRYCG | 4 cut(s) | 110, 159, 251, 1816 |
| BstNSI | RCATGY | 2 cut(s) | 576, 4102 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3303 |
| BstSFI | CTRYAG | 6 cut(s) | 37, 829, 1892, 2283, 3339, 3567 |
| BstSLI | GKGCMC | 3 cut(s) | 2415, 3277, 4302 |
| BstUI | CGCG | 2 cut(s) | 530, 1812 |
| BstV1I | GCAGC | 6 cut(s) | 301, 457, 663, 739, 1376, 4282 |
| BstV2I | GAAGAC | 5 cut(s) | 63, 312, 951, 1437, 1995 |
| BstX2I | RGATCY | 7 cut(s) | 1596, 1638, 1969, 2042, 2914, 3451, 3779 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1252, 3920 |
| BstYI | RGATCY | 7 cut(s) | 1596, 1638, 1969, 2042, 2914, 3451, 3779 |
| BstZ17I | GTATAC | 1 cut(s) | 50 |
| BstZI | CGGCCG | 1 cut(s) | 248 |
| Bsu36I | CCTNAGG | 1 cut(s) | 369 |
| BtgI | CCRYGG | 2 cut(s) | 3642, 3720 |
| BtsI | GCAGTG | 3 cut(s) | 2697, 3879, 4300 |
| BtuMI | TCGCGA | 1 cut(s) | 1812 |
| Cac8I | GCNNGC | 9 cut(s) | 15, 24, 117, 248, 260, 1246, 3232, 4089, 4298 |
| CaiI | CAGNNNCTG | 2 cut(s) | 821, 1900 |
| CciI | TCATGA | 2 cut(s) | 1648, 3513 |
| CfoI | GCGC | 3 cut(s) | 530, 1039, 1926 |
| Cfr10I | RCCGGY | 4 cut(s) | 105, 115, 246, 3964 |
| Cfr13I | GGNCC | 6 cut(s) | 244, 1030, 2347, 2369, 2694, 3998 |
| CseI | GACGC | 5 cut(s) | 1391, 1842, 2166, 3236, 4305 |
| CspAI | ACCGGT | 1 cut(s) | 105 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2686, 2721 |
| DdeI | CTNAG | 9 cut(s) | 18, 369, 522, 1020, 1703, 1871, 1931, 2247, 2538 |
| DraI | TTTAAA | 2 cut(s) | 415, 3382 |
| DraIII | CACNNNGTG | 1 cut(s) | 920 |
| EaeI | YGGCCR | 5 cut(s) | 248, 2475, 2662, 2983, 3232 |
| EagI | CGGCCG | 1 cut(s) | 248 |
| Eam1104I | CTCTTC | 2 cut(s) | 671, 2631 |
| EarI | CTCTTC | 2 cut(s) | 671, 2631 |
| EciI | GGCGGA | 3 cut(s) | 19, 81, 348 |
| Ecl136II | GAGCTC | 3 cut(s) | 970, 3618, 3696 |
| EclXI | CGGCCG | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 6 cut(s) | 132, 1200, 2078, 3642, 3720, 4006 |
| Eco147I | AGGCCT | 2 cut(s) | 407, 4255 |
| Eco24I | GRGCYC | 4 cut(s) | 628, 972, 3620, 3698 |
| Eco31I | GGTCTC | 1 cut(s) | 3010 |
| Eco47I | GGWCC | 5 cut(s) | 1030, 2347, 2369, 2694, 3998 |
| Eco52I | CGGCCG | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 3 cut(s) | 970, 3618, 3696 |
| Eco57I | CTGAAG | 7 cut(s) | 765, 963, 1965, 2007, 2985, 3483, 4123 |
| Eco81I | CCTNAGG | 1 cut(s) | 369 |
| EcoICRI | GAGCTC | 3 cut(s) | 970, 3618, 3696 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3600 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2347 |
| EcoRI | GAATTC | 1 cut(s) | 1482 |
| EcoT14I | CCWWGG | 6 cut(s) | 132, 1200, 2078, 3642, 3720, 4006 |
| EcoT22I | ATGCAT | 2 cut(s) | 1360, 2485 |
| EcoT38I | GRGCYC | 4 cut(s) | 628, 972, 3620, 3698 |
| ErhI | CCWWGG | 6 cut(s) | 132, 1200, 2078, 3642, 3720, 4006 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 956, 988, 2050, 2082, 3022, 3054 |
| FaqI | GGGAC | 4 cut(s) | 413, 2130, 3126, 3877 |
| FauI | CCCGC | 9 cut(s) | 112, 178, 208, 234, 251, 390, 4096, 4266, 4289 |
| FauNDI | CATATG | 1 cut(s) | 990 |
| FbaI | TGATCA | 4 cut(s) | 1273, 1495, 2425, 2893 |
| FblI | GTMKAC | 1 cut(s) | 49 |
| FriOI | GRGCYC | 4 cut(s) | 628, 972, 3620, 3698 |
| FseI | GGCCGGCC | 1 cut(s) | 250 |
| FspBI | CTAG | 4 cut(s) | 879, 1488, 2724, 3255 |
| GlaI | GCGC | 3 cut(s) | 529, 1038, 1925 |
| GsaI | CCCAGC | 4 cut(s) | 658, 2412, 2612, 3587 |
| GsuI | CTGGAG | 6 cut(s) | 110, 2019, 2634, 3034, 3262, 3306 |
| HaeII | RGCGCY | 1 cut(s) | 1040 |
| HapII | CCGG | 6 cut(s) | 106, 116, 177, 247, 3284, 3965 |
| HgaI | GACGC | 5 cut(s) | 1391, 1842, 2166, 3236, 4305 |
| HhaI | GCGC | 3 cut(s) | 530, 1039, 1926 |
| Hin6I | GCGC | 3 cut(s) | 528, 1037, 1924 |
| HinP1I | GCGC | 3 cut(s) | 528, 1037, 1924 |
| HincII | GTYRAC | 4 cut(s) | 708, 826, 1716, 3847 |
| HindII | GTYRAC | 4 cut(s) | 708, 826, 1716, 3847 |
| HindIII | AAGCTT | 1 cut(s) | 1163 |
| HpaI | GTTAAC | 2 cut(s) | 708, 3847 |
| HpaII | CCGG | 6 cut(s) | 106, 116, 177, 247, 3284, 3965 |
| Hpy99I | CGWCG | 4 cut(s) | 277, 1407, 3892, 4321 |
| HpyCH4IV | ACGT | 5 cut(s) | 309, 1434, 1681, 1918, 3670 |
| HpyF3I | CTNAG | 9 cut(s) | 18, 369, 522, 1020, 1703, 1871, 1931, 2247, 2538 |
| HpySE526I | ACGT | 5 cut(s) | 309, 1434, 1681, 1918, 3670 |
| HspAI | GCGC | 3 cut(s) | 528, 1037, 1924 |
| Kpn2I | TCCGGA | 1 cut(s) | 3283 |
| KpnI | GGTACC | 1 cut(s) | 1539 |
| KroI | GCCGGC | 2 cut(s) | 115, 246 |
| KroNI | GCCGGC | 2 cut(s) | 117, 248 |
| Ksp22I | TGATCA | 4 cut(s) | 1273, 1495, 2425, 2893 |
| KspAI | GTTAAC | 2 cut(s) | 708, 3847 |
| Lsp1109I | GCAGC | 6 cut(s) | 301, 457, 663, 739, 1376, 4282 |
| MaeI | CTAG | 4 cut(s) | 879, 1488, 2724, 3255 |
| MaeII | ACGT | 5 cut(s) | 309, 1434, 1681, 1918, 3670 |
| MaeIII | GTNAC | 7 cut(s) | 1145, 1406, 1802, 2287, 2459, 2529, 3296 |
| MbiI | CCGCTC | 1 cut(s) | 258 |
| MfeI | CAATTG | 2 cut(s) | 1467, 1629 |
| MflI | RGATCY | 7 cut(s) | 1596, 1638, 1969, 2042, 2914, 3451, 3779 |
| MhlI | GDGCHC | 8 cut(s) | 628, 972, 2415, 3248, 3277, 3620, 3698, 4302 |
| MlsI | TGGCCA | 4 cut(s) | 2477, 2664, 2985, 3234 |
| MluNI | TGGCCA | 4 cut(s) | 2477, 2664, 2985, 3234 |
| MlyI | GAGTC | 3 cut(s) | 1695, 2456, 3475 |
| MmeI | TCCRAC | 2 cut(s) | 3081, 3870 |
| Mox20I | TGGCCA | 4 cut(s) | 2477, 2664, 2985, 3234 |
| Mph1103I | ATGCAT | 2 cut(s) | 1360, 2485 |
| MroI | TCCGGA | 1 cut(s) | 3283 |
| MroNI | GCCGGC | 2 cut(s) | 115, 246 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3957 |
| MscI | TGGCCA | 4 cut(s) | 2477, 2664, 2985, 3234 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2679, 3918 |
| Msp20I | TGGCCA | 4 cut(s) | 2477, 2664, 2985, 3234 |
| MspA1I | CMGCKG | 4 cut(s) | 654, 2408, 2612, 4273 |
| MspCI | CTTAAG | 1 cut(s) | 3169 |
| MspI | CCGG | 6 cut(s) | 106, 116, 177, 247, 3284, 3965 |
| MunI | CAATTG | 2 cut(s) | 1467, 1629 |
| Mva1269I | GAATGC | 3 cut(s) | 1673, 2003, 2299 |
| MvnI | CGCG | 2 cut(s) | 530, 1812 |
| NaeI | GCCGGC | 2 cut(s) | 117, 248 |
| NciI | CCSGG | 1 cut(s) | 178 |
| NcoI | CCATGG | 2 cut(s) | 3642, 3720 |
| NdeI | CATATG | 1 cut(s) | 990 |
| NgoMIV | GCCGGC | 2 cut(s) | 115, 246 |
| NmeAIII | GCCGAG | 1 cut(s) | 279 |
| NmuCI | GTSAC | 5 cut(s) | 1145, 1802, 2287, 2459, 3296 |
| NruI | TCGCGA | 1 cut(s) | 1812 |
| NsiI | ATGCAT | 2 cut(s) | 1360, 2485 |
| NspI | RCATGY | 2 cut(s) | 576, 4102 |
| PagI | TCATGA | 2 cut(s) | 1648, 3513 |
| PceI | AGGCCT | 2 cut(s) | 407, 4255 |
| PciI | ACATGT | 1 cut(s) | 572 |
| PctI | GAATGC | 3 cut(s) | 1673, 2003, 2299 |
| PdiI | GCCGGC | 2 cut(s) | 117, 248 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3957 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3161 |
| PinAI | ACCGGT | 1 cut(s) | 105 |
| Ple19I | CGATCG | 2 cut(s) | 159, 1816 |
| PleI | GAGTC | 3 cut(s) | 1695, 2456, 3475 |
| PpsI | GAGTC | 3 cut(s) | 1695, 2456, 3475 |
| PpuMI | RGGWCCY | 1 cut(s) | 2347 |
| PscI | ACATGT | 1 cut(s) | 572 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3303 |
| PshBI | ATTAAT | 2 cut(s) | 1386, 2151 |
| PsiI | TTATAA | 1 cut(s) | 1560 |
| Psp124BI | GAGCTC | 3 cut(s) | 972, 3620, 3698 |
| Psp5II | RGGWCCY | 1 cut(s) | 2347 |
| PspFI | CCCAGC | 4 cut(s) | 654, 2408, 2608, 3583 |
| PspPI | GGNCC | 6 cut(s) | 244, 1030, 2347, 2369, 2694, 3998 |
| PspPPI | RGGWCCY | 1 cut(s) | 2347 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3547, 3579 |
| PstNI | CAGNNNCTG | 2 cut(s) | 821, 1900 |
| PsuI | RGATCY | 7 cut(s) | 1596, 1638, 1969, 2042, 2914, 3451, 3779 |
| PvuI | CGATCG | 2 cut(s) | 159, 1816 |
| PvuII | CAGCTG | 3 cut(s) | 654, 2408, 2612 |
| RigI | GGCCGGCC | 1 cut(s) | 250 |
| RruI | TCGCGA | 1 cut(s) | 1812 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2679, 3918 |
| SacI | GAGCTC | 3 cut(s) | 972, 3620, 3698 |
| Sau96I | GGNCC | 6 cut(s) | 244, 1030, 2347, 2369, 2694, 3998 |
| SchI | GAGTC | 3 cut(s) | 1695, 2456, 3475 |
| SduI | GDGCHC | 8 cut(s) | 628, 972, 2415, 3248, 3277, 3620, 3698, 4302 |
| SfcI | CTRYAG | 6 cut(s) | 37, 829, 1892, 2283, 3339, 3567 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2991 |
| SinI | GGWCC | 5 cut(s) | 1030, 2347, 2369, 2694, 3998 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2679, 3918 |
| SmlI | CTYRAG | 7 cut(s) | 8, 627, 898, 1046, 1592, 2931, 3169 |
| SmoI | CTYRAG | 7 cut(s) | 8, 627, 898, 1046, 1592, 2931, 3169 |
| SseBI | AGGCCT | 2 cut(s) | 407, 4255 |
| SspI | AATATT | 2 cut(s) | 1213, 4286 |
| SspMI | CTAG | 4 cut(s) | 879, 1488, 2724, 3255 |
| SstI | GAGCTC | 3 cut(s) | 972, 3620, 3698 |
| StuI | AGGCCT | 2 cut(s) | 407, 4255 |
| StyI | CCWWGG | 6 cut(s) | 132, 1200, 2078, 3642, 3720, 4006 |
| TaiI | ACGT | 5 cut(s) | 312, 1437, 1684, 1921, 3673 |
| TatI | WGTACW | 9 cut(s) | 494, 518, 1050, 2402, 2496, 3425, 3787, 3828, 3902 |
| TauI | GCSGC | 5 cut(s) | 85, 140, 253, 2518, 3650 |
| TseFI | GTSAC | 5 cut(s) | 1145, 1802, 2287, 2459, 3296 |
| TseI | GCWGC | 6 cut(s) | 289, 470, 651, 752, 1364, 4270 |
| Tsp45I | GTSAC | 5 cut(s) | 1145, 1802, 2287, 2459, 3296 |
| TspGWI | ACGGA | 7 cut(s) | 75, 1810, 2134, 2455, 3743, 4248, 4254 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3161 |
| Vha464I | CTTAAG | 1 cut(s) | 3169 |
| VpaK11BI | GGWCC | 5 cut(s) | 1030, 2347, 2369, 2694, 3998 |
| VspI | ATTAAT | 2 cut(s) | 1386, 2151 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3600 |
| XapI | RAATTY | 9 cut(s) | 811, 1172, 1420, 1482, 1938, 2125, 2263, 2908, 3419 |
| XceI | RCATGY | 2 cut(s) | 576, 4102 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2351 |
| XmiI | GTMKAC | 1 cut(s) | 49 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3957 |
| XspI | CTAG | 4 cut(s) | 879, 1488, 2724, 3255 |
| Zsp2I | ATGCAT | 2 cut(s) | 1360, 2485 |