AT3G51500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014297
Physical Location & Seq
Forward (+)
19108080 .. 19108917
838 bp
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UTR
Exon/CDS
Intron
AT3G51500.1

Sequence Viewer

Length: 351 bp
ATGCAAGATTCAAAGATTCCACCTTTCTCTGAAGCAAAAAGAATGAAGATTCCTACTCCAAAACAACCCTTGACTCAACTACCACCACGTATCGGGAAAAAAGTTTCAAATCGGAGCAAATCGAACCAGGTTCATGCGATTTCACATCAACTTGAGATGTCTCCAAATTCAGATTCATCTCCAGGAAACGAGTACAGAGCACTGAGACGCAAGTATTTGCTGCTAGAGGAAGATAGTTTCGCGTTGGAGAGAGAGTTAAAGGAAGCAGAGGATGAGGTTAAAGCACTTGAAGATGAGAAACTTGAGCTCTTGGACAAACTCGTTGTTATGGAAGGTTTAGTTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.25

Weight (kDa)

5.76

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 242
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 3 cut(s) 12, 108, 290
AjnI CCWGG 2 cut(s) 126, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 202, 309
Alw26I GTCTC 2 cut(s) 165, 199
AlwI GGATC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 166
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 202, 309
BbvI GCAGC 1 cut(s) 207
BciT130I CCWGG 2 cut(s) 128, 183
BcoDI GTCTC 2 cut(s) 165, 199
BfaI CTAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 2 cut(s) 128, 183
BmrFI CCNGG 2 cut(s) 128, 183
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 173, 323
BsaAI YACGTR 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseBI CCWGG 2 cut(s) 128, 183
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 202, 309
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 165, 199
BsmBI CGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 202, 309
Bsp143I GATC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 242
BspPI GGATC 1 cut(s) 338
BssMI GATC 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 128, 183
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 242
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 2 cut(s) 165, 199
BstMBI GATC 1 cut(s) 343
BstNI CCWGG 2 cut(s) 128, 183
BstSCI CCNGG 2 cut(s) 126, 181
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 200
CseI GACGC 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 134
CviJI RGCY 1 cut(s) 307
CviKI_1 RGCY 1 cut(s) 307
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 126, 181
EcoT38I GRGCYC 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 135, 329
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 224
GluI GCNGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 165
HgaI GACGC 1 cut(s) 216
Hin1II CATG 1 cut(s) 137
HinfI GANTC 5 cut(s) 8, 16, 49, 73, 173
Hpy188I TCNGA 3 cut(s) 31, 114, 172
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 4 cut(s) 113, 140, 168, 195
Lsp1109I GCAGC 1 cut(s) 207
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 88
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 3 cut(s) 58, 242, 302
MhlI GDGCHC 2 cut(s) 202, 309
MluCI AATT 1 cut(s) 166
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 3 cut(s) 220, 262, 268
MseI TTAA 2 cut(s) 257, 279
MspR9I CCNGG 2 cut(s) 128, 183
MvaI CCWGG 2 cut(s) 128, 183
MvnI CGCG 1 cut(s) 242
NdeII GATC 1 cut(s) 343
NlaIII CATG 1 cut(s) 137
PfeI GAWTC 4 cut(s) 8, 16, 49, 173
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 126, 181
PspGI CCWGG 2 cut(s) 126, 181
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 257, 279
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 128, 183
SduI GDGCHC 2 cut(s) 202, 309
SetI ASST 6 cut(s) 25, 91, 132, 279, 309, 337
SexAI ACCWGGT 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 152, 302
SmoI CTYRAG 2 cut(s) 152, 302
Sse9I AATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 126, 181
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 122
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 4 cut(s) 8, 16, 49, 173
Tru1I TTAA 2 cut(s) 257, 279
Tru9I TTAA 2 cut(s) 257, 279
TscAI CASTG 1 cut(s) 207
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 59, 122, 165
TspRI CASTG 1 cut(s) 207
XapI RAATTY 1 cut(s) 166
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.