MD15G1226600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014297
Physical Location & Seq
Forward (+)
18416982 .. 18419928
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1226600.v1.1.491

Sequence Viewer

Length: 414 bp
ATGTCGCTGGCCGATGAGTTTTCGACTCCTAAGCTGAAGAAAAAGAAACCCTCAACTAAGAAGGCCCCCTTGTTTTTGCAACAAGGGAATGATGTGAACGGGGCTTCTCCACCTCCGGTAAAAGCAGGGCAGAAAGGAACCAAAAGAAAAAAGAACGAAGTTTCTCCGTCCTTCCAGCAGCAGCCCGAGAGGTTGAACTCAGATTCGTTGCCCAACTCCTCTCCATCTGGAAGCGGGTACCGTGCACTGAGGCTCAAGTATTTGCTGCTGGAGGAAGAGAGCTTTGCGTTGGGGAGAGATCTAAGAGAGGTTGAAGATGACGTCAAGACCCTTGAGGACGAGAAGCATGCACTTTTGGACAAGCTTGTTGTGTTAGAAGGGCTCGTTGATCCTTCGGAATTGCATTTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.15

Weight (kDa)

7.9

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 2 cut(s) 196, 314
AluBI AGCT 3 cut(s) 34, 282, 364
AluI AGCT 3 cut(s) 34, 282, 364
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 9, 63
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 178, 181, 265
Asp718I GGTACC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 3 cut(s) 190, 193, 252
BccI CCATC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BglII AGATCT 1 cut(s) 298
BisI GCNGC 3 cut(s) 179, 182, 266
BlsI GCNGC 3 cut(s) 180, 183, 267
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 3 cut(s) 66, 139, 239
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 239, 353
BsaHI GRCGYC 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 115
BseMII CTCAG 2 cut(s) 213, 239
BseRI GAGGAG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 3 cut(s) 190, 193, 252
BshFI GGCC 2 cut(s) 11, 65
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 116
BsnI GGCC 2 cut(s) 11, 65
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 247, 384
Bsp143I GATC 2 cut(s) 298, 388
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 11, 65
BspCNI CTCAG 2 cut(s) 212, 240
BspLI GGNNCC 3 cut(s) 66, 139, 239
BspPI GGATC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 237
BssMI GATC 2 cut(s) 298, 388
BssNI GRCGYC 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 9, 348
BstDEI CTNAG 5 cut(s) 30, 57, 199, 248, 302
BstKTI GATC 2 cut(s) 301, 391
BstMBI GATC 2 cut(s) 298, 388
BstNSI RCATGY 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 190, 193, 252
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 2 cut(s) 11, 65
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 9, 348
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 347
CviJI RGCY 9 cut(s) 11, 34, 65, 104, 184, 253, 282, 364, 382
CviKI_1 RGCY 9 cut(s) 11, 34, 65, 104, 184, 253, 282, 364, 382
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 5 cut(s) 30, 57, 199, 248, 302
DpnI GATC 2 cut(s) 300, 390
DpnII GATC 2 cut(s) 298, 388
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 1 cut(s) 350
FaiI YATR 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 1 cut(s) 346
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 3 cut(s) 179, 182, 266
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 3 cut(s) 179, 182, 266
GluI GCNGC 3 cut(s) 179, 182, 266
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 2 cut(s) 11, 65
HapII CCGG 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 2 cut(s) 25, 203
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 97, 245
Hpy188I TCNGA 2 cut(s) 202, 397
Hpy188III TCNNGA 2 cut(s) 228, 325
Hpy8I GTNNAC 2 cut(s) 97, 245
HpyAV CCTTC 4 cut(s) 55, 181, 371, 402
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 79, 245, 350, 403
HpyF3I CTNAG 5 cut(s) 30, 57, 199, 248, 302
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 1 cut(s) 350
KpnI GGTACC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 298, 388
LpnPI CCDG 5 cut(s) 111, 129, 188, 213, 254
Lsp1109I GCAGC 3 cut(s) 190, 193, 252
MaeII ACGT 1 cut(s) 321
MalI GATC 2 cut(s) 300, 390
MboI GATC 2 cut(s) 298, 388
MboII GAAGA 3 cut(s) 49, 287, 326
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 247, 384
MluCI AATT 1 cut(s) 398
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 8 cut(s) 61, 123, 183, 229, 243, 265, 301, 328
MspI CCGG 1 cut(s) 116
NdeII GATC 2 cut(s) 298, 388
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 3 cut(s) 66, 139, 239
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 3 cut(s) 180, 183, 267
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 66, 139, 239
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 3 cut(s) 179, 182, 266
Sau3AI GATC 2 cut(s) 298, 388
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 19
SduI GDGCHC 2 cut(s) 247, 384
SetI ASST 7 cut(s) 36, 115, 194, 284, 312, 324, 366
SmlI CTYRAG 2 cut(s) 254, 332
SmoI CTYRAG 2 cut(s) 254, 332
SphI GCATGC 1 cut(s) 350
Sse9I AATT 1 cut(s) 398
SsiI CCGC 1 cut(s) 234
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 398
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 252
TseI GCWGC 3 cut(s) 178, 181, 265
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 252
VneI GTGCAC 1 cut(s) 243
XceI RCATGY 1 cut(s) 350
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.