FvH4_1g09810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014297
Physical Location & Seq
Reverse (-)
5326747 .. 5328053
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09810.t1

Sequence Viewer

Length: 444 bp
ATGCAGGATTCGAAGATTCCCCTTTCGGATGAATTTTCGATTCCCAAGTCACGGAAGAAGAAAGTCACAGCCCAGAAAGGCCCCTTGTTTCAGGTACAAGGGAATGATGTAAATGGGGCACCTTCTCTTCCTGTGAAAGCAGGGAACAAACCATCGAAAAGAAACTTGAAGAGGGAAGTTTCTCCAATGGTACAGCAATCAGAGAGGTCAAACTCGAATTCGTTGCCTGATTCATCTACTTCTGGAAGCAAGTATCGTGAGCTAAGGCTTAAGTACTTGATGATGGAGGAAGAGAGTTTTGCTGTGGGGAAAGATCTACGAGATGTTGAGGAAGAGGTTAAGACCCTTGAGGAGGAGAAGTTTGCACTCTTGGACCAGCTTGTTGTGTTGGAAGGCCTCGTTGATCCTTCAGAGTTGCACCCCCAGGGTCTGCATTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

6.17

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 2 cut(s) 32, 217
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 96, 192, 275
AfiI CCNNNNNNNGG 2 cut(s) 51, 352
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 2 cut(s) 262, 379
AluI AGCT 2 cut(s) 262, 379
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 430
AoxI GGCC 2 cut(s) 79, 394
ApoI RAATTY 2 cut(s) 32, 217
AspS9I GGNCC 2 cut(s) 80, 373
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 118
BccI CCATC 2 cut(s) 160, 277
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 425
BfrI CTTAAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 80, 373
BmiI GGNNCC 2 cut(s) 82, 120
BmrFI CCNGG 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 423, 424
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 352
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 423, 424
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 51, 352
BseRI GAGGAG 2 cut(s) 365, 368
BseSI GKGCMC 1 cut(s) 121
BshFI GGCC 2 cut(s) 81, 396
BshNI GGYRCC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 51, 352
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 81, 396
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 313, 403
BspANI GGCC 2 cut(s) 81, 396
BspLI GGNNCC 2 cut(s) 82, 120
BspPI GGATC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 118
BspTI CTTAAG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 423, 424
BssMI GATC 2 cut(s) 313, 403
Bst2UI CCWGG 1 cut(s) 425
Bst6I CTCTTC 4 cut(s) 132, 164, 285, 327
BstAFI CTTAAG 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 263
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 316, 406
BstMBI GATC 2 cut(s) 313, 403
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 2 cut(s) 81, 396
BtsCI GGATG 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 80, 373
Csp6I GTAC 3 cut(s) 95, 191, 274
CviJI RGCY 6 cut(s) 71, 81, 262, 268, 379, 396
CviKI_1 RGCY 6 cut(s) 71, 81, 262, 268, 379, 396
CviQI GTAC 3 cut(s) 95, 191, 274
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 315, 405
DpnII GATC 2 cut(s) 313, 403
Eam1104I CTCTTC 4 cut(s) 132, 164, 285, 327
EarI CTCTTC 4 cut(s) 132, 164, 285, 327
Eco147I AGGCCT 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 423
FaiI YATR 1 cut(s) 442
FokI GGATG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 81, 396
HinfI GANTC 4 cut(s) 8, 16, 40, 230
Hpy188I TCNGA 3 cut(s) 28, 202, 412
Hpy188III TCNNGA 2 cut(s) 243, 257
HpyAV CCTTC 3 cut(s) 132, 386, 417
HpyCH4V TGCA 4 cut(s) 4, 365, 418, 433
HpyF3I CTNAG 1 cut(s) 263
Kzo9I GATC 2 cut(s) 313, 403
LpnPI CCDG 9 cut(s) 77, 86, 126, 144, 228, 240, 389, 410, 437
MaeIII GTNAC 2 cut(s) 48, 64
MalI GATC 2 cut(s) 315, 405
MboI GATC 2 cut(s) 313, 403
MboII GAAGA 7 cut(s) 25, 67, 70, 119, 181, 302, 344
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 32, 217
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 8 cut(s) 165, 198, 280, 322, 328, 343, 346, 407
MseI TTAA 2 cut(s) 270, 339
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 425
NdeII GATC 2 cut(s) 313, 403
NlaIV GGNNCC 2 cut(s) 82, 120
NmuCI GTSAC 2 cut(s) 48, 64
NspV TTCGAA 1 cut(s) 11
PasI CCCWGGG 1 cut(s) 424
PceI AGGCCT 1 cut(s) 396
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 4 cut(s) 8, 16, 40, 230
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 82, 120
PspPI GGNCC 2 cut(s) 80, 373
PstNI CAGNNNCTG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 3 cut(s) 96, 192, 275
RsaNI GTAC 3 cut(s) 95, 191, 274
SaqAI TTAA 2 cut(s) 270, 339
Sau3AI GATC 2 cut(s) 313, 403
Sau96I GGNCC 2 cut(s) 80, 373
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 425
SduI GDGCHC 1 cut(s) 121
SetI ASST 6 cut(s) 96, 124, 209, 264, 339, 381
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 269, 347
SmoI CTYRAG 2 cut(s) 269, 347
Sse9I AATT 2 cut(s) 32, 217
SseBI AGGCCT 1 cut(s) 396
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 423
TaqI TCGA 4 cut(s) 11, 38, 155, 215
TasI AATT 2 cut(s) 32, 217
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 4 cut(s) 8, 16, 40, 230
Tru1I TTAA 2 cut(s) 270, 339
Tru9I TTAA 2 cut(s) 270, 339
TseFI GTSAC 2 cut(s) 48, 64
Tsp45I GTSAC 2 cut(s) 48, 64
TspDTI ATGAA 3 cut(s) 45, 222, 426
TspGWI ACGGA 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 2 cut(s) 32, 217
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.