MD02G1107400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014297
Physical Location & Seq
Forward (+)
8674352 .. 8675422
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1107400.v1.1.491

Sequence Viewer

Length: 282 bp
ATGAAGAATGAAGTTTCTCCGTCGTTCCAGCAGCAGCCAGAGAGGTTGAGCTCAGATTCGTTGCCGGAGTCCTCCCCATCTGGAAGTGGGTACCGTGCACTGAGGCTCAAGTATCTGCTGCTGGAAGAAGAGAGCTTTGCGTTGGGGAGAGATCTAAGAGAGGTTGAAGATGAGGTCAAGACCCTCGAGGACGAGAAGCATGCACTCTTGGACAAGCTTGTTGTGCTAGAAGGCCTTGTTGATCCTTCGGAATTGCAGCCGCAGGGGTTGCATTTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.45

Weight (kDa)

4.57

Isoelectric Point (pI)

65.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 236
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 3 cut(s) 51, 135, 217
AluI AGCT 3 cut(s) 51, 135, 217
Alw21I GWGCWC 2 cut(s) 53, 100
Alw44I GTGCAC 1 cut(s) 96
AlwI GGATC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 96
ApeKI GCWGC 4 cut(s) 31, 34, 118, 256
Asp718I GGTACC 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 53, 100
BbvI GCAGC 4 cut(s) 43, 46, 105, 268
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BfaI CTAG 1 cut(s) 227
BglII AGATCT 1 cut(s) 151
BisI GCNGC 5 cut(s) 32, 35, 119, 257, 260
BlsI GCNGC 5 cut(s) 33, 36, 120, 258, 261
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 66, 92
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 4 cut(s) 43, 46, 105, 268
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 53, 100
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 53, 100
Bsp143I GATC 2 cut(s) 151, 241
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 65, 93
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 90
BssMI GATC 2 cut(s) 151, 241
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 52, 101, 155
BstKTI GATC 2 cut(s) 154, 244
BstMBI GATC 2 cut(s) 151, 241
BstMWI GCNNNNNNNGC 2 cut(s) 223, 268
BstNSI RCATGY 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 43, 46, 105, 268
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 200
CviJI RGCY 7 cut(s) 37, 51, 106, 135, 217, 234, 259
CviKI_1 RGCY 7 cut(s) 37, 51, 106, 135, 217, 234, 259
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 52, 101, 155
DpnI GATC 2 cut(s) 153, 243
DpnII GATC 2 cut(s) 151, 241
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 203
FaiI YATR 1 cut(s) 201
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 32, 35, 119, 257, 260
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 5 cut(s) 32, 35, 119, 257, 260
FspBI CTAG 1 cut(s) 227
GluI GCNGC 5 cut(s) 32, 35, 119, 257, 260
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 56, 68
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 55, 250
Hpy188III TCNNGA 2 cut(s) 81, 178
Hpy8I GTNNAC 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 224, 255
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 98, 203, 256, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 268
HpyF3I CTNAG 3 cut(s) 52, 101, 155
Hsp92II CATG 1 cut(s) 203
KpnI GGTACC 1 cut(s) 94
Kzo9I GATC 2 cut(s) 151, 241
LpnPI CCDG 6 cut(s) 41, 51, 66, 78, 107, 248
Lsp1109I GCAGC 4 cut(s) 43, 46, 105, 268
MaeI CTAG 1 cut(s) 227
MalI GATC 2 cut(s) 153, 243
MboI GATC 2 cut(s) 151, 241
MboII GAAGA 4 cut(s) 16, 137, 140, 179
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 53, 100
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 7 cut(s) 36, 82, 96, 154, 166, 181, 194
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 223, 268
NdeII GATC 2 cut(s) 151, 241
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 92
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 185
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 5 cut(s) 33, 36, 120, 258, 261
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 185
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 53
SatI GCNGC 5 cut(s) 32, 35, 119, 257, 260
Sau3AI GATC 2 cut(s) 151, 241
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 2 cut(s) 53, 100
SetI ASST 6 cut(s) 47, 53, 137, 165, 177, 219
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 107, 185
SmoI CTYRAG 2 cut(s) 107, 185
SphI GCATGC 1 cut(s) 203
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 53
StuI AGGCCT 1 cut(s) 234
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 251
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 105
TseI GCWGC 4 cut(s) 31, 34, 118, 256
TspDTI ATGAA 2 cut(s) 17, 24
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 96
XceI RCATGY 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.