Prupe.7G188600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014297
Physical Location & Seq
Reverse (-)
18126816 .. 18128349
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G188600.1

Sequence Viewer

Length: 444 bp
ATGCAGGATCCAAAGATGTCGCTTGCTGAGGAATTTTCGAATCCTAAGCCACGGAAAAAGAAGCCCTCAACCCAGAAAGCCCCATTGTTTCAGTTACAAGGGAATGATGCCAATGGGACTCCTCCACTTCCATTGAAACCAGGGCAAAAGGTATCCAAAAGAAATTTTAAGAATGAAGTTTCTCCATCGTTTCAGCAGCCAGAGAGGTCAAACTCAGATTCATTGCCAGACTCTTCTACTTCTGGAAGCGGGTATCGTGCACTAAGGCTCAAGTATTTGCTGCTGGAGGAAGAGAGCTTTGCATTGGGGAGAGATCTAAGAGAGGTTGAAGATGAGGTTAAGACCCTTGAGGATGAGAAGCTTGCTCTCTTGGACCAACTTGTGGTGCTAGAAGGCCTAGTTGATCCTTCAGAGTTGCACCCCCAGGGGTTACATTTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.39

Weight (kDa)

5.48

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 1 cut(s) 249
AclWI GGATC 3 cut(s) 2, 15, 398
AcsI RAATTY 2 cut(s) 32, 163
AcuI CTGAAG 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 136, 329
AjnI CCWGG 2 cut(s) 139, 423
AluBI AGCT 2 cut(s) 297, 361
AluI AGCT 2 cut(s) 297, 361
Alw21I GWGCWC 1 cut(s) 262
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 3 cut(s) 2, 15, 398
AoxI GGCC 1 cut(s) 394
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 196, 280
ApoI RAATTY 2 cut(s) 32, 163
AspS9I GGNCC 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 262
BamHI GGATCC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 208, 267
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 141, 425
BciVI GTATCC 1 cut(s) 163
BfaI CTAG 2 cut(s) 389, 398
BfuI GTATCC 1 cut(s) 163
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 197, 281
BlsI GCNGC 2 cut(s) 198, 282
Bme1390I CCNGG 2 cut(s) 141, 425
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 141, 425
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 305
Bpu10I CCTNAGC 2 cut(s) 27, 45
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 254, 368
BsaJI CCNNGG 4 cut(s) 50, 140, 423, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 141, 425
BseDI CCNNGG 4 cut(s) 50, 140, 423, 424
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 18, 228
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 2 cut(s) 208, 267
BshFI GGCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 7, 313, 403
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 19, 227
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 3 cut(s) 2, 15, 398
BspT104I TTCGAA 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 221
BssECI CCNNGG 4 cut(s) 50, 140, 423, 424
BssMI GATC 3 cut(s) 7, 313, 403
Bst2UI CCWGG 2 cut(s) 141, 425
Bst6I CTCTTC 2 cut(s) 238, 285
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 24, 363
BstDEI CTNAG 5 cut(s) 27, 45, 214, 263, 317
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 3 cut(s) 10, 316, 406
BstMBI GATC 3 cut(s) 7, 313, 403
BstNI CCWGG 2 cut(s) 141, 425
BstSCI CCNGG 2 cut(s) 139, 423
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 208, 267
BstX2I RGATCY 2 cut(s) 7, 313
BstYI RGATCY 2 cut(s) 7, 313
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 24, 363
Cfr13I GGNCC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviJI RGCY 8 cut(s) 49, 64, 80, 199, 268, 297, 361, 396
CviKI_1 RGCY 8 cut(s) 49, 64, 80, 199, 268, 297, 361, 396
DdeI CTNAG 5 cut(s) 27, 45, 214, 263, 317
DpnI GATC 3 cut(s) 9, 315, 405
DpnII GATC 3 cut(s) 7, 313, 403
Eam1104I CTCTTC 2 cut(s) 238, 285
EarI CTCTTC 2 cut(s) 238, 285
Eco147I AGGCCT 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 139, 423
FaiI YATR 1 cut(s) 442
FaqI GGGAC 1 cut(s) 130
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 197, 281
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 197, 281
FspBI CTAG 2 cut(s) 389, 398
GluI GCNGC 2 cut(s) 197, 281
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 4 cut(s) 40, 118, 218, 230
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 217, 412
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 386, 417
HpyCH4V TGCA 4 cut(s) 4, 260, 302, 418
HpyF3I CTNAG 5 cut(s) 27, 45, 214, 263, 317
Kzo9I GATC 3 cut(s) 7, 313, 403
LpnPI CCDG 9 cut(s) 86, 126, 153, 213, 228, 240, 269, 410, 437
Lsp1109I GCAGC 2 cut(s) 208, 267
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 389, 398
MaeIII GTNAC 2 cut(s) 93, 429
MalI GATC 3 cut(s) 9, 315, 405
MboI GATC 3 cut(s) 7, 313, 403
MboII GAAGA 3 cut(s) 225, 302, 341
MflI RGATCY 2 cut(s) 7, 313
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 32, 163
MlyI GAGTC 2 cut(s) 112, 224
MnlI CCTC 8 cut(s) 22, 76, 132, 198, 280, 316, 328, 343
MseI TTAA 2 cut(s) 168, 339
MspR9I CCNGG 2 cut(s) 141, 425
MvaI CCWGG 2 cut(s) 141, 425
NdeII GATC 3 cut(s) 7, 313, 403
NlaIV GGNNCC 1 cut(s) 9
NspV TTCGAA 1 cut(s) 38
PasI CCCWGGG 1 cut(s) 424
PceI AGGCCT 1 cut(s) 396
PfeI GAWTC 2 cut(s) 40, 218
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 2 cut(s) 198, 282
PleI GAGTC 2 cut(s) 112, 224
PpsI GAGTC 2 cut(s) 112, 224
Psp6I CCWGG 2 cut(s) 139, 423
PspGI CCWGG 2 cut(s) 139, 423
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 373
PsuI RGATCY 2 cut(s) 7, 313
SaqAI TTAA 2 cut(s) 168, 339
SatI GCNGC 2 cut(s) 197, 281
Sau3AI GATC 3 cut(s) 7, 313, 403
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 2 cut(s) 112, 224
ScrFI CCNGG 2 cut(s) 141, 425
SduI GDGCHC 1 cut(s) 262
SetI ASST 6 cut(s) 153, 209, 299, 327, 339, 363
SfaNI GCATC 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 269, 347
SmoI CTYRAG 2 cut(s) 269, 347
Sse9I AATT 2 cut(s) 32, 163
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 1 cut(s) 249
SspMI CTAG 2 cut(s) 389, 398
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 139, 423
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 32, 163
TfiI GAWTC 2 cut(s) 40, 218
Tru1I TTAA 2 cut(s) 168, 339
Tru9I TTAA 2 cut(s) 168, 339
TseI GCWGC 2 cut(s) 196, 280
TspDTI ATGAA 2 cut(s) 189, 210
TspGWI ACGGA 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 2 cut(s) 32, 163
XspI CTAG 2 cut(s) 389, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.