Rh2AG106600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014297
Physical Location & Seq
Forward (+)
9388110 .. 9388469
360 bp
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UTR
Exon/CDS
Intron
Rh2AG106600.1

Sequence Viewer

Length: 360 bp
ATGCAGGATTCAAAGATTCCCCTTTCGGATGAATTTTCGATTCCCAAGTCACGGAAGAAGAAAGTCTCGGCCCAGAAAGGCCCCTTGTTTCAGGTACAAGGGAATGATGTGAATGGGGCTCCTTCTCTTCCTCTAAAAGCTGGGAACAAACCATCCAAAAGGAACTTGAAGAGGGAAGTTTCTCCAATGGTCCAGCAGCCAGAGAGGTCAAACTCAAATTCGCTGCCTGATTCATCTTCGTCTGGAAGCAACTACCGTGAGCTAAGGCTTAAGTACTTGATGATGGAGGAAGAGAGCTTTGCAGTGGGGAAAGATCTACGAGAGGTTGAAGACGAGGTCAAGACCCTTGAGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

7.9

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 32, 217
AfaI GTAC 2 cut(s) 96, 275
AfiI CCNNNNNNNGG 2 cut(s) 51, 352
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 12, 169, 329
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 3 cut(s) 140, 262, 297
AluI AGCT 3 cut(s) 140, 262, 297
Alw26I GTCTC 1 cut(s) 70
AoxI GGCC 2 cut(s) 69, 79
ApeKI GCWGC 2 cut(s) 196, 223
ApoI RAATTY 2 cut(s) 32, 217
AspS9I GGNCC 3 cut(s) 70, 80, 190
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 208, 210
BccI CCATC 2 cut(s) 160, 277
BcoDI GTCTC 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 197, 224
BlsI GCNGC 2 cut(s) 198, 225
BmcAI AGTACT 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 70, 80, 190
BmiI GGNNCC 2 cut(s) 82, 120
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 263
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 352
BseGI GGATG 2 cut(s) 34, 152
BseLI CCNNNNNNNGG 2 cut(s) 51, 352
BseXI GCAGC 2 cut(s) 208, 210
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 71, 81
BslI CCNNNNNNNGG 2 cut(s) 51, 352
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 2 cut(s) 71, 81
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 313
BspANI GGCC 2 cut(s) 71, 81
BspLI GGNNCC 2 cut(s) 82, 120
BspTI CTTAAG 1 cut(s) 269
BssMI GATC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 3 cut(s) 132, 164, 285
BstAFI CTTAAG 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 263
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 34, 152
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 208, 210
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 2 cut(s) 71, 81
BtsCI GGATG 2 cut(s) 34, 152
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 70, 80, 190
Csp6I GTAC 2 cut(s) 95, 274
CviJI RGCY 8 cut(s) 71, 81, 119, 140, 199, 262, 268, 297
CviKI_1 RGCY 8 cut(s) 71, 81, 119, 140, 199, 262, 268, 297
CviQI GTAC 2 cut(s) 95, 274
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 132, 164, 285
EarI CTCTTC 3 cut(s) 132, 164, 285
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 197, 224
FokI GGATG 2 cut(s) 41, 139
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 197, 224
GluI GCNGC 2 cut(s) 197, 224
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 71, 81
HinfI GANTC 4 cut(s) 8, 16, 40, 230
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 243, 340
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 4, 302
HpyF3I CTNAG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 77, 86, 126, 206, 213, 228, 240
Lsp1109I GCAGC 2 cut(s) 208, 210
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 7 cut(s) 67, 70, 119, 181, 228, 302, 341
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 32, 217
MnlI CCTC 8 cut(s) 141, 165, 198, 280, 316, 328, 343, 346
MseI TTAA 1 cut(s) 270
MspCI CTTAAG 1 cut(s) 269
NdeII GATC 1 cut(s) 313
NlaIV GGNNCC 2 cut(s) 82, 120
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 48
PfeI GAWTC 4 cut(s) 8, 16, 40, 230
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 198, 225
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 82, 120
PspPI GGNCC 3 cut(s) 70, 80, 190
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 2 cut(s) 96, 275
RsaNI GTAC 2 cut(s) 95, 274
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 197, 224
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 70, 80, 190
ScaI AGTACT 1 cut(s) 275
SduI GDGCHC 1 cut(s) 121
SetI ASST 7 cut(s) 96, 142, 209, 264, 299, 327, 339
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 269, 347
SmoI CTYRAG 2 cut(s) 269, 347
Sse9I AATT 2 cut(s) 32, 217
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 32, 217
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 4 cut(s) 8, 16, 40, 230
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 2 cut(s) 196, 223
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 45, 222
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 309
Tth111I GACNNNGTC 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 2 cut(s) 32, 217
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.