Rmu_sc0003565.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003565.1
OG0014297
Physical Location & Seq
Forward (+)
50888 .. 53902
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003565.1_g000016.1.cds

Sequence Viewer

Length: 597 bp
atgatcgacctgactgcaccaattgggctgcttatggaggtggggtggccaaagattgatgattgcttatcagaagaaacccaaacgcaaccgcatcaaaaacagcgaagctctccccaatcttcaccggtacagattccgcatccggtgaaaatgcaggattcaaagattcccctttcggatgaattttcgattcccaagtcacggaagaagaaagcctcggcccagaaaggccccttgtttcaggtacaagggaatgatgtgaatggggctccttctcttcctctaaaagctgggaacaaaccatccagaaggaacttgaagagggaagtttctccaatggtccagcagccagagaggtcaaactcaaattcgctgcctgattcatcttcgtctggaagcaactaccgtgagctgaggcttaagtacttgatgatggaggaagagagctttgcagtggggaaagatctacgagaggttgaagacgaggtcaagacccttgaggaggagaagtttcaactcttggatgagcttgttgtgttagaaggcctcgttgatccttcagagttgcacccccaggggttgcattcatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.11

Weight (kDa)

5.49

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 140
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 2 cut(s) 185, 370
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 3 cut(s) 132, 249, 428
AfiI CCNNNNNNNGG 2 cut(s) 204, 505
AflII CTTAAG 1 cut(s) 422
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 4 cut(s) 165, 322, 482, 518
AjnI CCWGG 1 cut(s) 576
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 5 cut(s) 111, 293, 415, 450, 532
AluI AGCT 5 cut(s) 111, 293, 415, 450, 532
AlwI GGATC 1 cut(s) 551
AoxI GGCC 4 cut(s) 47, 222, 232, 547
ApeKI GCWGC 3 cut(s) 28, 349, 376
ApoI RAATTY 2 cut(s) 185, 370
AsiGI ACCGGT 1 cut(s) 127
AspS9I GGNCC 3 cut(s) 223, 233, 343
AsuHPI GGTGA 2 cut(s) 117, 160
AvaII GGWCC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 49
BanII GRGCYC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 489
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 15, 361, 363
BccI CCATC 2 cut(s) 313, 430
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 578
BfaI CTAG 1 cut(s) 595
BfrI CTTAAG 1 cut(s) 422
BglII AGATCT 1 cut(s) 466
BisI GCNGC 3 cut(s) 29, 350, 377
BlsI GCNGC 3 cut(s) 30, 351, 378
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 223, 233, 343
BmiI GGNNCC 2 cut(s) 235, 273
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 2 cut(s) 103, 151
BpiI GAAGAC 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 219, 576, 577
BsaWI WCCGGW 2 cut(s) 127, 145
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 505
Bse118I RCCGGY 1 cut(s) 127
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 3 cut(s) 219, 576, 577
BseGI GGATG 5 cut(s) 142, 187, 305, 532, 590
BseLI CCNNNNNNNGG 2 cut(s) 204, 505
BseMII CTCAG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 518, 521
BseXI GCAGC 3 cut(s) 15, 361, 363
BseYI CCCAGC 1 cut(s) 293
BshFI GGCC 4 cut(s) 49, 224, 234, 549
BshTI ACCGGT 1 cut(s) 127
BsiSI CCGG 2 cut(s) 128, 146
BslI CCNNNNNNNGG 2 cut(s) 204, 505
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 4 cut(s) 49, 224, 234, 549
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 3, 466, 556
BspACI CCGC 2 cut(s) 92, 140
BspANI GGCC 4 cut(s) 49, 224, 234, 549
BspCNI CTCAG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 235, 273
BspPI GGATC 1 cut(s) 551
BspTI CTTAAG 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 219, 576, 577
BssMI GATC 3 cut(s) 3, 466, 556
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 3 cut(s) 285, 317, 438
BstAFI CTTAAG 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 416
BstENI CCTNNNNNAGG 1 cut(s) 503
BstF5I GGATG 5 cut(s) 142, 187, 305, 532, 590
BstKTI GATC 3 cut(s) 6, 469, 559
BstMBI GATC 3 cut(s) 3, 466, 556
BstNI CCWGG 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 15, 361, 363
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 4 cut(s) 49, 224, 234, 549
BtsCI GGATG 5 cut(s) 142, 187, 305, 532, 590
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 462
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 223, 233, 343
Csp6I GTAC 3 cut(s) 131, 248, 427
CspAI ACCGGT 1 cut(s) 127
CviQI GTAC 3 cut(s) 131, 248, 427
DdeI CTNAG 1 cut(s) 416
DpnI GATC 3 cut(s) 5, 468, 558
DpnII GATC 3 cut(s) 3, 466, 556
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 3 cut(s) 285, 317, 438
EarI CTCTTC 3 cut(s) 285, 317, 438
Eco147I AGGCCT 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 546
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 274
FaiI YATR 1 cut(s) 35
Fnu4HI GCNGC 3 cut(s) 29, 350, 377
FokI GGATG 5 cut(s) 129, 194, 292, 539, 577
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 29, 350, 377
FspBI CTAG 1 cut(s) 595
GluI GCNGC 3 cut(s) 29, 350, 377
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 4 cut(s) 49, 224, 234, 549
HapII CCGG 2 cut(s) 128, 146
HinfI GANTC 5 cut(s) 136, 161, 169, 193, 383
HpaII CCGG 2 cut(s) 128, 146
HphI GGTGA 2 cut(s) 117, 160
Hpy188I TCNGA 3 cut(s) 73, 181, 565
Hpy188III TCNNGA 3 cut(s) 309, 396, 493
HpyAV CCTTC 4 cut(s) 285, 306, 539, 570
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 5 cut(s) 17, 157, 455, 571, 586
HpyF3I CTNAG 1 cut(s) 416
Kzo9I GATC 3 cut(s) 3, 466, 556
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 3 cut(s) 15, 361, 363
LweI GCATC 2 cut(s) 103, 151
MaeI CTAG 1 cut(s) 595
MaeIII GTNAC 1 cut(s) 201
MalI GATC 3 cut(s) 5, 468, 558
MboI GATC 3 cut(s) 3, 466, 556
MboII GAAGA 9 cut(s) 86, 114, 220, 223, 272, 334, 381, 455, 494
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 3 cut(s) 21, 185, 370
MluNI TGGCCA 1 cut(s) 49
Mox20I TGGCCA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 49
MseI TTAA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 49
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 2 cut(s) 128, 146
MspR9I CCNGG 1 cut(s) 578
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 578
NdeII GATC 3 cut(s) 3, 466, 556
NlaIV GGNNCC 2 cut(s) 235, 273
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 201
PasI CCCWGGG 1 cut(s) 577
PceI AGGCCT 1 cut(s) 549
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 5 cut(s) 136, 161, 169, 193, 383
PflFI GACNNNGTC 1 cut(s) 488
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 3 cut(s) 30, 351, 378
Psp6I CCWGG 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 235, 273
PspPI GGNCC 3 cut(s) 223, 233, 343
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 488
RsaI GTAC 3 cut(s) 132, 249, 428
RsaNI GTAC 3 cut(s) 131, 248, 427
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 29, 350, 377
Sau3AI GATC 3 cut(s) 3, 466, 556
Sau96I GGNCC 3 cut(s) 223, 233, 343
ScaI AGTACT 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 2 cut(s) 103, 151
SinI GGWCC 1 cut(s) 343
SmlI CTYRAG 2 cut(s) 422, 500
SmoI CTYRAG 2 cut(s) 422, 500
Sse9I AATT 3 cut(s) 21, 185, 370
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 2 cut(s) 92, 140
SspMI CTAG 1 cut(s) 595
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 6, 191
TasI AATT 3 cut(s) 21, 185, 370
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 5 cut(s) 136, 161, 169, 193, 383
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 3 cut(s) 28, 349, 376
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 198, 375, 579
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 462
Tth111I GACNNNGTC 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 343
XagI CCTNNNNNAGG 1 cut(s) 503
XapI RAATTY 2 cut(s) 185, 370
XspI CTAG 1 cut(s) 595
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.