pycom15g20150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014297
Physical Location & Seq
Forward (+)
14390531 .. 14390947
417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20150.1

Sequence Viewer

Length: 417 bp
ATGTCGCTGGCTGATGAGTTTTCAACTCCTAAGCTGAAGAAAAAGAAACCCTCAACCAAGAAGCGCCCCTTGTTTTTGCAACAAGGGAATGATGCGAACGGGGCTTCTCCACCTCCGGTAAAAGCAGGGCAGAAAGGAACCAAAAGAAACATGAAGAACGAAGTTTCTCCATCCTTCCAGCAGCAGTCCGAGAGGTTGAGCTCAGATTCGTTGCCTGACTCCTCCCCATCTGGAAGCGGGTACCGTGCACTGAGGCTCAAGTATTTGCTGCTGGAGGAAGAGAGCTTTGCATTGGGGAGCGATCTAAGAGCGGTTGAAGATGAGGTCAAGACCCTTGAGGACGAGAAGCATGCACTTTTGGACAAGCTTGTTGTGTTAGAAGGCCTCGTTGATCCTTCGGAATTGCATTTGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.18

Weight (kDa)

6.75

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 311
AciI CCGC 2 cut(s) 237, 311
AclWI GGATC 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 2 cut(s) 24, 317
AluBI AGCT 4 cut(s) 34, 201, 285, 367
AluI AGCT 4 cut(s) 34, 201, 285, 367
Alw21I GWGCWC 2 cut(s) 203, 250
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 1 cut(s) 386
AoxI GGCC 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 181, 268
Asp718I GGTACC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 203, 250
BbvI GCAGC 2 cut(s) 193, 255
BccI CCATC 2 cut(s) 178, 235
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BfoI RGCGCY 1 cut(s) 67
BisI GCNGC 2 cut(s) 182, 269
BlsI GCNGC 2 cut(s) 183, 270
BmiI GGNNCC 2 cut(s) 139, 242
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 242, 356
BsaWI WCCGGW 1 cut(s) 115
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 216, 242
BseRI GAGGAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 2 cut(s) 193, 255
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 203, 250
BsiSI CCGG 1 cut(s) 116
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 203, 250
Bsp143I GATC 2 cut(s) 301, 391
BspACI CCGC 2 cut(s) 237, 311
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 215, 243
BspLI GGNNCC 2 cut(s) 139, 242
BspPI GGATC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 240
BsrBI CCGCTC 1 cut(s) 311
BssMI GATC 2 cut(s) 301, 391
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 9, 351
BstDEI CTNAG 4 cut(s) 30, 202, 251, 305
BstF5I GGATG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 304, 394
BstMBI GATC 2 cut(s) 301, 391
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 193, 255
BsuRI GGCC 1 cut(s) 384
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 9, 351
CfoI GCGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 151, 350
CviJI RGCY 8 cut(s) 11, 34, 104, 201, 256, 285, 367, 384
CviKI_1 RGCY 8 cut(s) 11, 34, 104, 201, 256, 285, 367, 384
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 4 cut(s) 30, 202, 251, 305
DpnI GATC 2 cut(s) 303, 393
DpnII GATC 2 cut(s) 301, 391
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 201
Eco147I AGGCCT 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 2 cut(s) 154, 353
FaiI YATR 2 cut(s) 152, 351
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 2 cut(s) 150, 349
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 182, 269
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 182, 269
GlaI GCGC 1 cut(s) 65
GluI GCNGC 2 cut(s) 182, 269
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 66
Hin1II CATG 2 cut(s) 154, 353
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 206, 218
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 190, 205, 400
Hpy188III TCNNGA 2 cut(s) 231, 328
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 184, 374, 405
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 5 cut(s) 79, 248, 290, 353, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 4 cut(s) 30, 202, 251, 305
Hsp92II CATG 2 cut(s) 154, 353
HspAI GCGC 1 cut(s) 64
KpnI GGTACC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 301, 391
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 6 cut(s) 111, 129, 191, 216, 228, 257
Lsp1109I GCAGC 2 cut(s) 193, 255
LweI GCATC 1 cut(s) 82
MalI GATC 2 cut(s) 303, 393
MbiI CCGCTC 1 cut(s) 311
MboI GATC 2 cut(s) 301, 391
MboII GAAGA 4 cut(s) 49, 166, 290, 329
MhlI GDGCHC 2 cut(s) 203, 250
MluCI AATT 1 cut(s) 401
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 9 cut(s) 61, 123, 186, 232, 246, 268, 316, 331, 395
MspI CCGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 301, 391
NlaIII CATG 2 cut(s) 154, 353
NlaIV GGNNCC 2 cut(s) 139, 242
NspI RCATGY 1 cut(s) 353
PaeI GCATGC 1 cut(s) 353
PceI AGGCCT 1 cut(s) 384
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 183, 270
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 139, 242
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 203
SatI GCNGC 2 cut(s) 182, 269
Sau3AI GATC 2 cut(s) 301, 391
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 2 cut(s) 203, 250
SetI ASST 7 cut(s) 36, 115, 197, 203, 287, 327, 369
SfaNI GCATC 1 cut(s) 82
SmlI CTYRAG 2 cut(s) 257, 335
SmoI CTYRAG 2 cut(s) 257, 335
SphI GCATGC 1 cut(s) 353
Sse9I AATT 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 2 cut(s) 237, 311
SstI GAGCTC 1 cut(s) 203
StuI AGGCCT 1 cut(s) 384
TaaI ACNGT 1 cut(s) 245
TasI AATT 1 cut(s) 401
TfiI GAWTC 1 cut(s) 206
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 181, 268
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 246
XceI RCATGY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.