Rroxscaffold_2G00145460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014297
Physical Location & Seq
Reverse (-)
83383949 .. 83385181
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145460.1

Sequence Viewer

Length: 447 bp
ATGCAGGATTCAAAGATTCCCCTTTCGGATGAATTTTCGATTCCCCAGTCACGGAAGAAGAAAGTCTCGGCGCAGAAAGGCCCCTTGTTTCAGGTACAAGGGAATGATGTGAATGGGGCTCCTCCTTCTCTTCCTCTAAAACCTGGGAACAAACCATCCAAAAGGAACTTGAAGAGGGAAGTTTCTCCAATGGTCCAGCAACCAGAGAGGTCAAACTCAAATTCGCTGCCTGATTCATCTTCGTCTGGAAGCAACTACCGCGAGCTAAGGCTTAAGTACTTGATGATGGAGGAAGAGAGCTTTGCAGTGGGGAAAGATCTACGAGAGGTTGAAAACGAGGTTAAGACCCTTGAGGAGGAGAAGTTTGCACTCTTGGATGAGCTTGTTGTGTTAGAAGGCCTCGTTGATCCTTCAGAGTTGCACCCCCTGGGGTTGCATTCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.49

Weight (kDa)

5.51

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51500
fragaria_vesca FvH4_1g09810 FvH4_1g09810
malus_domestica MD02G1107400.v1.1 MD15G1226600.v1.1
prunus_persica Prupe.7G188600_v2.0.a1
pyrus_communis pycom15g20150
rosa_chinensis RchiOBHm_Chr2g0096641
rosa_laevigata RLG00000016657
rosa_multiflora Rmu_sc0003565.1_g000016
rosa_roxburghii Rroxscaffold_2G00145460
rosa_rugosa Rorug02G0059200
rosa_samantha Rh2AG106600 Rh2BG109000 Rh2CG110800 Rh2DG110300
rosa_wichuraiana Rw2G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 1 cut(s) 259
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 2 cut(s) 32, 220
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 2 cut(s) 96, 278
AfiI CCNNNNNNNGG 2 cut(s) 51, 355
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 3 cut(s) 12, 172, 332
AjnI CCWGG 2 cut(s) 142, 426
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 265, 300, 382
AluI AGCT 3 cut(s) 265, 300, 382
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 401
AoxI GGCC 2 cut(s) 79, 397
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 32, 220
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 80, 193
AvaII GGWCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 213
BccI CCATC 2 cut(s) 163, 280
BciT130I CCWGG 2 cut(s) 144, 428
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 445
BfrI CTTAAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 316
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 144, 428
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 80, 193
BmiI GGNNCC 2 cut(s) 82, 120
BmrFI CCNGG 2 cut(s) 144, 428
BmrI ACTGGG 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 143, 426, 427
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 355
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 2 cut(s) 144, 428
BseDI CCNNGG 3 cut(s) 143, 426, 427
BseGI GGATG 4 cut(s) 34, 155, 382, 440
BseLI CCNNNNNNNGG 2 cut(s) 51, 355
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 3 cut(s) 111, 368, 371
BseXI GCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 81, 399
BslI CCNNNNNNNGG 2 cut(s) 51, 355
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 2 cut(s) 81, 399
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 316, 406
BspACI CCGC 1 cut(s) 259
BspANI GGCC 2 cut(s) 81, 399
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 82, 120
BspPI GGATC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 272
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 143, 426, 427
BssMI GATC 2 cut(s) 316, 406
Bst2UI CCWGG 2 cut(s) 144, 428
Bst6I CTCTTC 3 cut(s) 135, 167, 288
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 4 cut(s) 34, 155, 382, 440
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 319, 409
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 316, 406
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 144, 428
BstSCI CCNGG 2 cut(s) 142, 426
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 2 cut(s) 81, 399
BtsCI GGATG 4 cut(s) 34, 155, 382, 440
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 80, 193
Csp6I GTAC 2 cut(s) 95, 277
CviJI RGCY 7 cut(s) 81, 119, 265, 271, 300, 382, 399
CviKI_1 RGCY 7 cut(s) 81, 119, 265, 271, 300, 382, 399
CviQI GTAC 2 cut(s) 95, 277
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 318, 408
DpnII GATC 2 cut(s) 316, 406
Eam1104I CTCTTC 3 cut(s) 135, 167, 288
EarI CTCTTC 3 cut(s) 135, 167, 288
Eco147I AGGCCT 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 142, 426
EcoT38I GRGCYC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 4 cut(s) 41, 142, 389, 427
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 445
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 81, 399
HhaI GCGC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 4 cut(s) 8, 16, 40, 233
Hpy188I TCNGA 2 cut(s) 28, 415
Hpy188III TCNNGA 1 cut(s) 246
HpyAV CCTTC 3 cut(s) 135, 389, 420
HpyCH4V TGCA 5 cut(s) 4, 305, 368, 421, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 266
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 2 cut(s) 316, 406
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 213
MaeI CTAG 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 318, 408
MboI GATC 2 cut(s) 316, 406
MboII GAAGA 6 cut(s) 67, 70, 122, 184, 231, 305
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 32, 220
MseI TTAA 2 cut(s) 273, 342
MspCI CTTAAG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 144, 428
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 2 cut(s) 144, 428
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 2 cut(s) 316, 406
NlaIV GGNNCC 2 cut(s) 82, 120
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 48
PasI CCCWGGG 1 cut(s) 427
PceI AGGCCT 1 cut(s) 399
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 4 cut(s) 8, 16, 40, 233
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 142, 426
PspGI CCWGG 2 cut(s) 142, 426
PspN4I GGNNCC 2 cut(s) 82, 120
PspPI GGNCC 2 cut(s) 80, 193
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 2 cut(s) 96, 278
RsaNI GTAC 2 cut(s) 95, 277
SaqAI TTAA 2 cut(s) 273, 342
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 316, 406
Sau96I GGNCC 2 cut(s) 80, 193
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 144, 428
SduI GDGCHC 1 cut(s) 121
SetI ASST 8 cut(s) 96, 145, 212, 267, 302, 330, 342, 384
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 272, 350
SmoI CTYRAG 2 cut(s) 272, 350
Sse9I AATT 2 cut(s) 32, 220
SseBI AGGCCT 1 cut(s) 399
SsiI CCGC 1 cut(s) 259
SspMI CTAG 1 cut(s) 445
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 142, 426
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 32, 220
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 4 cut(s) 8, 16, 40, 233
Tru1I TTAA 2 cut(s) 273, 342
Tru9I TTAA 2 cut(s) 273, 342
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 45, 225, 429
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 32, 220
XspI CTAG 1 cut(s) 445
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.