AT3G52170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006827
Physical Location & Seq
Reverse (-)
19346752 .. 19349555
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52170.2

Sequence Viewer

Length: 1500 bp
ATGCACTCTCTTAAGACTACTTGCGTTGGGCAAATATTTGCTCTAGCTAAGCCTCACGATTCTGTAGGCAAGAGGACTCGTAATCGGATTCCTAAAGAAGAGAGAAAGACACTGGTTGAATCTTTTATAAAGAAGCATCAGAAACTAAACAATGGGAGTTTTCCTTCACTTAGCCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAAGGGAGATTGTTAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTACTTGAGGGAAATGGCTCTGTGCAAGATCAAAGTCTGTCAAGTTCAATCCTGATGGATCCTGTGCCCCCTTTATCTTTGTCCCCAAACGGATTTCATTCTGGGTCATATCAAAGTCTTGATTTTTCTTCTGAGTCACCTGAGGGAAACGTTAACGGTAGCCAGGTTTGCTTGGATAATTGCAGGGAAGTGAGTGGAAGTCAACTTTTGAAAGAAGACATTGGGCTCGTACACCAGTCAATGGACTCCACTGACATATCTATGACTCAGCTTGCAACATCTTGCAGTGAAGACAATGATATCAAGAGTAATGCAGGGCTACAAAATAGAATGGAGACAGTGTGCGATAGCGTTGACACCAAACCACAGGATAAAAGACTCGATGTGGATAACAAAGACGAAGGATTTGAGGAACTTCGTTTCATGGAATCAGACGGCACAAAGCCTGTTAACAATGACGATAGAGTGAATGATGCAGGAGCAGCAATGACCGAAATTAAGAACGGATTAGGCACAATTGATATGTCAGCAGAAACAGTTGTTGAGACGTTTCCATTAAAATCTGTGACTTCAACGATGGACTCACCGGATGCACAACCTACTGAGTTGAACAAAGTTTGTGAGGGTGGGAAAGGAACTGAAACGGAGGTGGAAGCTGATCGCAGCACAGTAAATCATGTTGATCTTGGGGAGATTTCATCATCCACTTCATCTGCTGTACTTGAAGACATAGGGACGGAAGTCATTGTTGGTCAAATACCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGGAAATTGTAAATTCTGCTTCAGTAGATGTTGAATGTGCTGATGCTAAAGAGACAGTTGTTGTGAATGGTGTGATTGGCAACGTCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAGCTGAACAGAAAATGCCAACATCTAGCACTGAGTCGGGAAGTCGTAAGAACGACAGAGCAAAAGTGGACACTGTGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAACCATGGAAAAAGGGAAAATTGATGCTCCAGATAGTTCCAGCTCTCAAAAAGAAAACAATGCAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAGAAACAAATCCTCTCTTGGCAGTTCTGAAATCTTTCGTGACAGCCTTTGTGAAGTTTTGGTCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

499

Amino Acids

54.03

Weight (kDa)

4.83

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 31 - 79 3.5e-22 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 511
AclI AACGTT 1 cut(s) 420
AclWI GGATC 3 cut(s) 205, 323, 336
AcsI RAATTY 2 cut(s) 1081, 1169
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 2 cut(s) 501, 990
AfiI CCNNNNNNNGG 1 cut(s) 511
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 7 cut(s) 119, 318, 481, 843, 880, 995, 1103
AjnI CCWGG 2 cut(s) 259, 432
AjuI GAANNNNNNNTTGG 6 cut(s) 1002, 1024, 1034, 1047, 1056, 1079
AluBI AGCT 6 cut(s) 47, 541, 926, 1193, 1272, 1353
AluI AGCT 6 cut(s) 47, 541, 926, 1193, 1272, 1353
Alw26I GTCTC 4 cut(s) 599, 809, 1115, 1154
AlwI GGATC 3 cut(s) 205, 323, 336
ApeKI GCWGC 2 cut(s) 752, 933
ApoI RAATTY 2 cut(s) 1081, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 1 cut(s) 1463
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 1279
AsuHPI GGTGA 3 cut(s) 275, 399, 846
AvaII GGWCC 1 cut(s) 257
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 339
BamHI GGATCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 498
BbsI GAAGAC 4 cut(s) 492, 567, 1002, 1432
BbvI GCAGC 2 cut(s) 764, 945
BccI CCATC 2 cut(s) 319, 841
BceAI ACGGC 1 cut(s) 721
BciT130I CCWGG 2 cut(s) 261, 434
BcnI CCSGG 1 cut(s) 1279
BcoDI GTCTC 4 cut(s) 599, 809, 1115, 1154
BfaI CTAG 2 cut(s) 44, 1215
BfmI CTRYAG 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 753, 934
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 2 cut(s) 754, 935
Bme1390I CCNGG 3 cut(s) 261, 434, 1279
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 3 cut(s) 261, 434, 1279
BmsI GCATC 5 cut(s) 145, 733, 850, 1102, 1324
BoxI GACNNNNGTC 1 cut(s) 1010
BpiI GAAGAC 4 cut(s) 492, 567, 1002, 1432
BpmI CTGGAG 1 cut(s) 1323
Bpu1102I GCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 1279
BsaJI CCNNGG 2 cut(s) 253, 1314
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 117, 505
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 2 cut(s) 261, 434
BseDI CCNNGG 2 cut(s) 253, 1314
BseGI GGATG 2 cut(s) 865, 971
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 5 cut(s) 393, 402, 551, 864, 1212
BseNI ACTGG 2 cut(s) 117, 505
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 2 cut(s) 764, 945
BsiSI CCGG 2 cut(s) 857, 1278
BslFI GGGAC 3 cut(s) 337, 1018, 1031
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 4 cut(s) 599, 809, 1115, 1154
BsmBI CGTCTC 1 cut(s) 809
BsmFI GGGAC 3 cut(s) 337, 1018, 1031
Bsp1286I GDGCHC 2 cut(s) 339, 498
Bsp143I GATC 5 cut(s) 197, 298, 328, 928, 952
Bsp1720I GCTNAGC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 1314
BspCNI CTCAG 5 cut(s) 394, 403, 550, 865, 1213
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 3 cut(s) 205, 323, 336
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 2 cut(s) 117, 505
BssECI CCNNGG 2 cut(s) 253, 1314
BssMI GATC 5 cut(s) 197, 298, 328, 928, 952
BssT1I CCWWGG 2 cut(s) 253, 1314
Bst2UI CCWGG 2 cut(s) 261, 434
Bst4CI ACNGT 6 cut(s) 428, 610, 808, 940, 1126, 1264
Bst6I CTCTTC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 7 cut(s) 48, 170, 402, 411, 537, 873, 1221
BstDSI CCRYGG 1 cut(s) 1314
BstF5I GGATG 2 cut(s) 865, 971
BstKTI GATC 5 cut(s) 200, 301, 331, 931, 955
BstMAI GTCTC 4 cut(s) 599, 809, 1115, 1154
BstMBI GATC 5 cut(s) 197, 298, 328, 928, 952
BstMWI GCNNNNNNNGC 2 cut(s) 438, 752
BstNI CCWGG 2 cut(s) 261, 434
BstPAI GACNNNNGTC 1 cut(s) 1010
BstSCI CCNGG 3 cut(s) 259, 432, 1277
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 764, 945
BstV2I GAAGAC 4 cut(s) 492, 567, 1002, 1432
BstX2I RGATCY 2 cut(s) 197, 328
BstYI RGATCY 2 cut(s) 197, 328
Bsu36I CCTNAGG 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 1314
BtsCI GGATG 2 cut(s) 865, 971
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 6 cut(s) 110, 519, 562, 615, 1218, 1260
Cac8I GCNNGC 1 cut(s) 543
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 500, 989
CviAII CATG 4 cut(s) 694, 947, 1157, 1315
CviQI GTAC 2 cut(s) 500, 989
DdeI CTNAG 7 cut(s) 48, 170, 402, 411, 537, 873, 1221
DpnI GATC 5 cut(s) 199, 300, 330, 930, 954
DpnII GATC 5 cut(s) 197, 298, 328, 928, 952
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 253, 1314
Eco24I GRGCYC 1 cut(s) 498
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 1074
Eco81I CCTNAGG 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 259, 432
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 253, 1314
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 2 cut(s) 253, 1314
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 4 cut(s) 697, 950, 1160, 1318
FaqI GGGAC 3 cut(s) 337, 1018, 1031
FatI CATG 4 cut(s) 693, 946, 1156, 1314
Fnu4HI GCNGC 2 cut(s) 753, 934
FokI GGATG 2 cut(s) 872, 958
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 753, 934
FspBI CTAG 2 cut(s) 44, 1215
GluI GCNGC 2 cut(s) 753, 934
GsuI CTGGAG 1 cut(s) 1323
HapII CCGG 2 cut(s) 857, 1278
Hin1II CATG 4 cut(s) 697, 950, 1160, 1318
HincII GTYRAC 4 cut(s) 424, 473, 625, 721
HindII GTYRAC 4 cut(s) 424, 473, 625, 721
HpaI GTTAAC 2 cut(s) 424, 721
HpaII CCGG 2 cut(s) 857, 1278
HphI GGTGA 3 cut(s) 275, 399, 846
Hpy166II GTNNAC 6 cut(s) 424, 473, 502, 625, 721, 1258
Hpy188I TCNGA 6 cut(s) 87, 141, 403, 703, 1458, 1495
Hpy188III TCNNGA 7 cut(s) 56, 322, 389, 574, 1227, 1340, 1468
Hpy8I GTNNAC 6 cut(s) 424, 473, 502, 625, 721, 1258
HpyAV CCTTC 3 cut(s) 174, 665, 1300
HpyCH4III ACNGT 6 cut(s) 428, 610, 808, 940, 1126, 1264
HpyCH4IV ACGT 3 cut(s) 420, 818, 1152
HpyCH4V TGCA 9 cut(s) 4, 295, 453, 545, 555, 584, 746, 863, 1373
HpyF10VI GCNNNNNNNGC 2 cut(s) 438, 752
HpyF3I CTNAG 7 cut(s) 48, 170, 402, 411, 537, 873, 1221
HpySE526I ACGT 3 cut(s) 420, 818, 1152
Hsp92II CATG 4 cut(s) 697, 950, 1160, 1318
KspAI GTTAAC 2 cut(s) 424, 721
Kzo9I GATC 5 cut(s) 197, 298, 328, 928, 952
LmnI GCTCC 2 cut(s) 749, 1342
Lsp1109I GCAGC 2 cut(s) 764, 945
LweI GCATC 5 cut(s) 145, 733, 850, 1102, 1324
MaeI CTAG 2 cut(s) 44, 1215
MaeII ACGT 3 cut(s) 420, 818, 1152
MaeIII GTNAC 4 cut(s) 263, 405, 835, 1468
MalI GATC 5 cut(s) 199, 300, 330, 930, 954
MboI GATC 5 cut(s) 197, 298, 328, 928, 952
MboII GAAGA 7 cut(s) 110, 390, 497, 572, 1007, 1315, 1437
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 2 cut(s) 197, 328
MhlI GDGCHC 2 cut(s) 339, 498
MluCI AATT 8 cut(s) 448, 765, 786, 1074, 1081, 1169, 1329, 1386
MlyI GAGTC 8 cut(s) 70, 258, 413, 509, 529, 642, 845, 1232
MmeI TCCRAC 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 1463
MseI TTAA 7 cut(s) 12, 423, 720, 768, 827, 1379, 1389
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 1193
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 2 cut(s) 857, 1278
MspR9I CCNGG 3 cut(s) 261, 434, 1279
MunI CAATTG 1 cut(s) 786
MvaI CCWGG 2 cut(s) 261, 434
MwoI GCNNNNNNNGC 2 cut(s) 438, 752
NciI CCSGG 1 cut(s) 1279
NcoI CCATGG 1 cut(s) 1314
NdeII GATC 5 cut(s) 197, 298, 328, 928, 952
NlaIII CATG 4 cut(s) 697, 950, 1160, 1318
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 4 cut(s) 263, 405, 835, 1468
PdmI GAANNNNTTC 1 cut(s) 1463
PfeI GAWTC 6 cut(s) 59, 88, 119, 698, 1397, 1412
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 2 cut(s) 754, 935
PleI GAGTC 8 cut(s) 70, 257, 412, 509, 529, 642, 845, 1231
PpsI GAGTC 8 cut(s) 70, 257, 412, 509, 529, 642, 845, 1231
PshAI GACNNNNGTC 1 cut(s) 1010
PsiI TTATAA 1 cut(s) 128
Psp1406I AACGTT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 259, 432
PspGI CCWGG 2 cut(s) 259, 432
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 2 cut(s) 197, 328
PvuII CAGCTG 1 cut(s) 1193
RsaI GTAC 2 cut(s) 501, 990
RsaNI GTAC 2 cut(s) 500, 989
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 7 cut(s) 12, 423, 720, 768, 827, 1379, 1389
SatI GCNGC 2 cut(s) 753, 934
Sau3AI GATC 5 cut(s) 197, 298, 328, 928, 952
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 8 cut(s) 70, 258, 413, 509, 529, 642, 845, 1232
ScrFI CCNGG 3 cut(s) 261, 434, 1279
SduI GDGCHC 2 cut(s) 339, 498
SfaNI GCATC 5 cut(s) 145, 733, 850, 1102, 1324
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 2 cut(s) 11, 275
SmoI CTYRAG 2 cut(s) 11, 275
Sse9I AATT 8 cut(s) 448, 765, 786, 1074, 1081, 1169, 1329, 1386
SspI AATATT 1 cut(s) 36
SspMI CTAG 2 cut(s) 44, 1215
StyD4I CCNGG 3 cut(s) 259, 432, 1277
StyI CCWWGG 2 cut(s) 253, 1314
TaaI ACNGT 6 cut(s) 428, 610, 808, 940, 1126, 1264
TaiI ACGT 3 cut(s) 423, 821, 1155
TaqI TCGA 1 cut(s) 651
TaqII GACCGA 1 cut(s) 776
TasI AATT 8 cut(s) 448, 765, 786, 1074, 1081, 1169, 1329, 1386
TatI WGTACW 1 cut(s) 988
TfiI GAWTC 6 cut(s) 59, 88, 119, 698, 1397, 1412
Tru1I TTAA 7 cut(s) 12, 423, 720, 768, 827, 1379, 1389
Tru9I TTAA 7 cut(s) 12, 423, 720, 768, 827, 1379, 1389
TscAI CASTG 6 cut(s) 117, 526, 562, 615, 1225, 1267
TseFI GTSAC 4 cut(s) 263, 405, 835, 1468
TseI GCWGC 2 cut(s) 752, 933
Tsp45I GTSAC 4 cut(s) 263, 405, 835, 1468
TspDTI ATGAA 5 cut(s) 356, 682, 957, 969, 1299
TspGWI ACGGA 4 cut(s) 375, 789, 929, 1022
TspRI CASTG 6 cut(s) 117, 526, 562, 615, 1225, 1267
Van91I CCANNNNNTGG 1 cut(s) 511
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 1081, 1169
XmnI GAANNNNTTC 1 cut(s) 1463
XspI CTAG 2 cut(s) 44, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.