FvH4_7g06800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006827
Physical Location & Seq
Reverse (-)
6812894 .. 6817990
5097 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06800.t2

Sequence Viewer

Length: 1452 bp
ATGCATGCTATAAAGGGTGGCTGGGTTGGGCAAACATTTGCCCTAGCTAAAAACAATGAATCTGAAGGAAGGAAGTCCCGAATTCGGCGTTCAAAGGAGGAGAGGAAAGAAATGGTTGTAGCCTTCATTAAAAAGTATCAGAATCTGCACAATGGGAGTTTTCCATCGCTTAATCTGACCCACAAGGAAGTTGGTGGGTCTTTCTACACTGTACGAGAAATTGTCCGAGATGTAATCCAAGAAAATAGAGTGCTGGGTCCTGCTAAGTTCATTGCAGAGGATCAGACCATTGATCAGTTCTTGGAACATAATCCACTTGGTTCGATTGCTGCAGAACCTCAAGATGCTTTGGCAGAAGCATCAAATGATTCTCAGTTTGCCAACAATCAACAACGAGATACAGTGCAAGAAATGGTTTTGGTTTCTGATGGGCATTCGTTTACTCTTGAGCATCAGATTTTTGGCCATGGCCGAGCCGTGAATGGCACTGCAGTAGAAGTGAATGGCAAAGAAACGGAGGGTAAAGAGTTGCAAGTAAATGTATCAGTGGAAACAGAAAATAAGGTAGGTGAAGAATCTGTAGTTTCTGATGGGAATTGTATTGGTCGAGAATATCAGATGTTTGACAATGGTAGTCAGGTTGATCAGAAATACAAACAAACTGAGGAACTGACATGTGCGGAGCATAAAGTAAGTGAGCCTTTGGAAGTAGAGAAGAATGTTGAGGAAGTTTGGGGAACATCTAGGTCTAGAGTGACCTCCATAGAGGCAGATGTAATAGTTGAGACATTCCCCTTACCACCTGTTACTAGGACTACTGAGAGCTTGGATGGAAAGGTAGAAGTAAGAAATTTTATTTTGTCTGCTGAGGATAAAGGAACCAAGGGGATGGGGTCGGCCGCTGGTGTTGATAGTTCGCCATCGGATACAATAGATTCCATGAAGAGCTTGGTTGATGATAAAGTAGCAATGAAAAGCTCCTTGGTTGGAAACAAATCCACCTCAGTGAATGCGGAAGCATTAGAAATTGTCAGTGATCCGTCCCTGGAGAGCTCAAATTGCTCAACCATTGAAGGAAATGTTATATATCAAAATGGAAGCACAGACCCTAAGGTCAAAGCACCCGGAAATGACGTTCCGATATCTGAGAGCTTTGAACAAATTGAAGGGACTGCTGGAGCTAAGACAAGAAAAGCTCCAGATACAAAAAACCTTAATGGTACCAGCAATCTCAATGGCCTGCCACAAACCAAAGAGGTGCTTGTGAATGAAGATGAAGTCGTTGTGCACTCTACTGCAGGCTTGCAAAAAGGAAACAACCCCACTTTAGACAGGATTAATCTCGAATCGTGGCAAAGGGGGCCTAAAAAGTCTGAAAAACGGGAAGGCAAACCTTTCTGGGCTGTACTTAAAGAGTATATAGACGCCTTTGTGAAGTTTTGGTCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

484

Amino Acids

53.02

Weight (kDa)

5.05

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_AT3G52170 PF25896 31 - 79 8.4e-22 Helix-turn-helix domain in AT3G52170-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1112
Acc65I GGTACC 1 cut(s) 1220
AccB1I GGYRCC 1 cut(s) 1220
AciI CCGC 3 cut(s) 680, 900, 1013
AclWI GGATC 2 cut(s) 288, 1031
AcoI YGGCCR 3 cut(s) 463, 469, 897
AcsI RAATTY 2 cut(s) 81, 850
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 1425
AfaI GTAC 3 cut(s) 213, 1222, 1407
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 674
AgsI TTSAA 4 cut(s) 93, 1073, 1157, 1166
AjnI CCWGG 1 cut(s) 1044
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AleI CACNNNNGTG 1 cut(s) 1004
AloI GAACNNNNNNTCC 2 cut(s) 1119, 1151
AluBI AGCT 8 cut(s) 47, 825, 948, 978, 1053, 1152, 1181, 1196
AluI AGCT 8 cut(s) 47, 825, 948, 978, 1053, 1152, 1181, 1196
Alw21I GWGCWC 2 cut(s) 1055, 1290
Alw26I GTCTC 1 cut(s) 779
Alw44I GTGCAC 1 cut(s) 1286
AlwI GGATC 2 cut(s) 288, 1031
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 5 cut(s) 463, 469, 897, 1237, 1361
ApaLI GTGCAC 1 cut(s) 1286
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 81, 850
AseI ATTAAT 1 cut(s) 1338
Asp718I GGTACC 1 cut(s) 1220
AspS9I GGNCC 2 cut(s) 257, 1361
AsuC2I CCSGG 1 cut(s) 1125
AsuHPI GGTGA 1 cut(s) 581
AvaII GGWCC 1 cut(s) 257
AxyI CCTNAGG 1 cut(s) 1110
BaeGI GKGCMC 1 cut(s) 1290
BalI TGGCCA 1 cut(s) 465
BanI GGYRCC 1 cut(s) 1220
BanII GRGCYC 1 cut(s) 1055
Bbv12I GWGCWC 2 cut(s) 1055, 1290
BbvCI CCTCAGC 1 cut(s) 867
BbvI GCAGC 1 cut(s) 316
BccI CCATC 6 cut(s) 172, 422, 584, 824, 883, 928
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 1046
BciVI GTATCC 1 cut(s) 919
BclI TGATCA 2 cut(s) 292, 643
BcnI CCSGG 1 cut(s) 1125
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 4 cut(s) 44, 744, 750, 810
BfmI CTRYAG 4 cut(s) 330, 489, 579, 1296
BfuI GTATCC 1 cut(s) 919
BisI GCNGC 2 cut(s) 330, 900
BlsI GCNGC 2 cut(s) 331, 901
Bme1390I CCNGG 2 cut(s) 1046, 1125
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 257, 1361
BmiI GGNNCC 4 cut(s) 258, 880, 1222, 1362
BmrFI CCNGG 2 cut(s) 1046, 1125
BmsI GCATC 3 cut(s) 334, 368, 460
BpmI CTGGAG 3 cut(s) 1067, 1182, 1197
Bpu10I CCTNAGC 1 cut(s) 867
BpuEI CTTGAG 2 cut(s) 324, 467
BpuMI CCSGG 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 1425
BsaJI CCNNGG 4 cut(s) 466, 882, 981, 1044
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse21I CCTNAGG 1 cut(s) 1110
Bse3DI GCAATG 2 cut(s) 270, 975
BseBI CCWGG 1 cut(s) 1046
BseDI CCNNGG 4 cut(s) 466, 882, 981, 1044
BseGI GGATG 2 cut(s) 835, 894
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 2 cut(s) 270, 975
BseMII CTCAG 6 cut(s) 386, 654, 810, 858, 1017, 1137
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 1290
BseX3I CGGCCG 1 cut(s) 897
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 2 cut(s) 21, 253
BsgI GTGCAG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 900
BshFI GGCC 5 cut(s) 465, 471, 899, 1239, 1363
BshNI GGYRCC 1 cut(s) 1220
BsiEI CGRYCG 1 cut(s) 900
BsiHKAI GWGCWC 2 cut(s) 1055, 1290
BsiSI CCGG 1 cut(s) 1125
BslFI GGGAC 3 cut(s) 61, 1027, 1183
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 3 cut(s) 61, 1027, 1183
BsmI GAATGC 2 cut(s) 433, 1015
BsnI GGCC 5 cut(s) 465, 471, 899, 1239, 1363
Bsp1286I GDGCHC 2 cut(s) 1055, 1290
Bsp143I GATC 4 cut(s) 280, 292, 643, 1036
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 3 cut(s) 680, 900, 1013
BspANI GGCC 5 cut(s) 465, 471, 899, 1239, 1363
BspCNI CTCAG 6 cut(s) 385, 655, 811, 859, 1016, 1138
BspLI GGNNCC 4 cut(s) 258, 880, 1222, 1362
BspMAI CTGCAG 3 cut(s) 334, 493, 1300
BspPI GGATC 2 cut(s) 288, 1031
BspQI GCTCTTC 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 1220
BsrDI GCAATG 2 cut(s) 270, 975
BssECI CCNNGG 4 cut(s) 466, 882, 981, 1044
BssMI GATC 4 cut(s) 280, 292, 643, 1036
BssNI GRCGYC 1 cut(s) 1425
BssT1I CCWWGG 3 cut(s) 466, 882, 981
Bst2UI CCWGG 1 cut(s) 1046
Bst4CI ACNGT 2 cut(s) 211, 403
Bst6I CTCTTC 1 cut(s) 938
BstACI GRCGYC 1 cut(s) 1425
BstC8I GCNNGC 4 cut(s) 6, 1241, 1300, 1304
BstDEI CTNAG 9 cut(s) 264, 372, 663, 819, 867, 1003, 1110, 1146, 1182
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 835, 894
BstKTI GATC 4 cut(s) 283, 295, 646, 1039
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 4 cut(s) 280, 292, 643, 1036
BstMCI CGRYCG 1 cut(s) 900
BstMWI GCNNNNNNNGC 2 cut(s) 1059, 1360
BstNI CCWGG 1 cut(s) 1046
BstNSI RCATGY 2 cut(s) 8, 678
BstSCI CCNGG 2 cut(s) 1044, 1123
BstSFI CTRYAG 4 cut(s) 330, 489, 579, 1296
BstSLI GKGCMC 1 cut(s) 1290
BstV1I GCAGC 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 889
BstZI CGGCCG 1 cut(s) 897
Bsu36I CCTNAGG 1 cut(s) 1110
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 5 cut(s) 465, 471, 899, 1239, 1363
BtgI CCRYGG 1 cut(s) 466
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 835, 894
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 6 cut(s) 207, 408, 486, 552, 1011, 1039
Cac8I GCNNGC 4 cut(s) 6, 1241, 1300, 1304
CaiI CAGNNNCTG 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 257, 1361
CseI GACGC 1 cut(s) 1433
Csp6I GTAC 3 cut(s) 212, 1221, 1406
CviAII CATG 4 cut(s) 5, 467, 675, 940
CviQI GTAC 3 cut(s) 212, 1221, 1406
DdeI CTNAG 9 cut(s) 264, 372, 663, 819, 867, 1003, 1110, 1146, 1182
DpnI GATC 4 cut(s) 282, 294, 645, 1038
DpnII GATC 4 cut(s) 280, 292, 643, 1036
DrdI GACNNNNNNGTC 1 cut(s) 1112
DseDI GACNNNNNNGTC 1 cut(s) 1112
EaeI YGGCCR 3 cut(s) 463, 469, 897
EagI CGGCCG 1 cut(s) 897
Eam1104I CTCTTC 1 cut(s) 938
EarI CTCTTC 1 cut(s) 938
Ecl136II GAGCTC 1 cut(s) 1053
EclXI CGGCCG 1 cut(s) 897
Eco130I CCWWGG 3 cut(s) 466, 882, 981
Eco24I GRGCYC 1 cut(s) 1055
Eco32I GATATC 1 cut(s) 1143
Eco47I GGWCC 1 cut(s) 257
Eco52I CGGCCG 1 cut(s) 897
Eco53kI GAGCTC 1 cut(s) 1053
Eco57I CTGAAG 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 1053
EcoO109I RGGNCCY 2 cut(s) 257, 1361
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 1044
EcoRV GATATC 1 cut(s) 1143
EcoT14I CCWWGG 3 cut(s) 466, 882, 981
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1055
ErhI CCWWGG 3 cut(s) 466, 882, 981
FaeI CATG 4 cut(s) 8, 470, 678, 943
FalI AAGNNNNNCTT 4 cut(s) 685, 717, 1245, 1277
FaqI GGGAC 3 cut(s) 61, 1027, 1183
FatI CATG 4 cut(s) 4, 466, 674, 939
FbaI TGATCA 2 cut(s) 292, 643
Fnu4HI GCNGC 2 cut(s) 330, 900
FokI GGATG 2 cut(s) 842, 901
FriOI GRGCYC 1 cut(s) 1055
Fsp4HI GCNGC 2 cut(s) 330, 900
FspBI CTAG 4 cut(s) 44, 744, 750, 810
GluI GCNGC 2 cut(s) 330, 900
GsaI CCCAGC 2 cut(s) 25, 257
GsuI CTGGAG 3 cut(s) 1067, 1182, 1197
HaeIII GGCC 5 cut(s) 465, 471, 899, 1239, 1363
HapII CCGG 1 cut(s) 1125
HgaI GACGC 1 cut(s) 1433
Hin1I GRCGYC 1 cut(s) 1425
Hin1II CATG 4 cut(s) 8, 470, 678, 943
HinfI GANTC 6 cut(s) 59, 142, 368, 575, 935, 1346
HpaII CCGG 1 cut(s) 1125
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 2 cut(s) 441, 1288
Hpy188III TCNNGA 7 cut(s) 78, 341, 446, 608, 750, 1199, 1343
Hpy8I GTNNAC 2 cut(s) 441, 1288
HpyAV CCTTC 6 cut(s) 59, 63, 133, 1067, 1160, 1379
HpyCH4III ACNGT 2 cut(s) 211, 403
HpyCH4IV ACGT 1 cut(s) 1134
HpyF10VI GCNNNNNNNGC 2 cut(s) 1059, 1360
HpyF3I CTNAG 9 cut(s) 264, 372, 663, 819, 867, 1003, 1110, 1146, 1182
HpySE526I ACGT 1 cut(s) 1134
Hsp92I GRCGYC 1 cut(s) 1425
Hsp92II CATG 4 cut(s) 8, 470, 678, 943
KpnI GGTACC 1 cut(s) 1224
Ksp22I TGATCA 2 cut(s) 292, 643
Kzo9I GATC 4 cut(s) 280, 292, 643, 1036
LguI GCTCTTC 1 cut(s) 938
LmnI GCTCC 4 cut(s) 682, 983, 1178, 1201
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 3 cut(s) 334, 368, 460
MaeI CTAG 4 cut(s) 44, 744, 750, 810
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 2 cut(s) 754, 805
MalI GATC 4 cut(s) 282, 294, 645, 1038
MboI GATC 4 cut(s) 280, 292, 643, 1036
MboII GAAGA 4 cut(s) 584, 727, 955, 1283
MhlI GDGCHC 2 cut(s) 1055, 1290
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 7 cut(s) 81, 219, 595, 850, 1026, 1057, 1161
MluNI TGGCCA 1 cut(s) 465
MmeI TCCRAC 2 cut(s) 967, 1425
Mox20I TGGCCA 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 465
MseI TTAA 5 cut(s) 129, 171, 1215, 1338, 1410
MslI CAYNNNNRTG 1 cut(s) 1004
Msp20I TGGCCA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 1 cut(s) 1125
MspR9I CCNGG 2 cut(s) 1046, 1125
Mva1269I GAATGC 2 cut(s) 433, 1015
MvaI CCWGG 1 cut(s) 1046
MwoI GCNNNNNNNGC 2 cut(s) 1059, 1360
NciI CCSGG 1 cut(s) 1125
NcoI CCATGG 1 cut(s) 466
NdeII GATC 4 cut(s) 280, 292, 643, 1036
NlaIII CATG 4 cut(s) 8, 470, 678, 943
NlaIV GGNNCC 4 cut(s) 258, 880, 1222, 1362
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 754
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 678
OliI CACNNNNGTG 1 cut(s) 1004
PaeI GCATGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 674
PciSI GCTCTTC 1 cut(s) 938
PctI GAATGC 2 cut(s) 433, 1015
PfeI GAWTC 6 cut(s) 59, 142, 368, 575, 935, 1346
PkrI GCNGC 2 cut(s) 331, 901
PpuMI RGGWCCY 1 cut(s) 257
PscI ACATGT 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 1338
Psp124BI GAGCTC 1 cut(s) 1055
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 1044
PspFI CCCAGC 2 cut(s) 21, 253
PspGI CCWGG 1 cut(s) 1044
PspN4I GGNNCC 4 cut(s) 258, 880, 1222, 1362
PspPI GGNCC 2 cut(s) 257, 1361
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 3 cut(s) 334, 493, 1300
PstNI CAGNNNCTG 1 cut(s) 145
RsaI GTAC 3 cut(s) 213, 1222, 1407
RsaNI GTAC 3 cut(s) 212, 1221, 1406
RseI CAYNNNNRTG 1 cut(s) 1004
SacI GAGCTC 1 cut(s) 1055
SapI GCTCTTC 1 cut(s) 938
SaqAI TTAA 5 cut(s) 129, 171, 1215, 1338, 1410
SatI GCNGC 2 cut(s) 330, 900
Sau3AI GATC 4 cut(s) 280, 292, 643, 1036
Sau96I GGNCC 2 cut(s) 257, 1361
ScrFI CCNGG 2 cut(s) 1046, 1125
SduI GDGCHC 2 cut(s) 1055, 1290
SfaNI GCATC 3 cut(s) 334, 368, 460
SfcI CTRYAG 4 cut(s) 330, 489, 579, 1296
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 1004
SmlI CTYRAG 2 cut(s) 339, 446
SmoI CTYRAG 2 cut(s) 339, 446
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 81, 219, 595, 850, 1026, 1057, 1161
SsiI CCGC 3 cut(s) 680, 900, 1013
SspMI CTAG 4 cut(s) 44, 744, 750, 810
SstI GAGCTC 1 cut(s) 1055
StyD4I CCNGG 2 cut(s) 1044, 1123
StyI CCWWGG 3 cut(s) 466, 882, 981
TaaI ACNGT 2 cut(s) 211, 403
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 3 cut(s) 323, 607, 1344
TasI AATT 7 cut(s) 81, 219, 595, 850, 1026, 1057, 1161
TatI WGTACW 1 cut(s) 1405
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 6 cut(s) 59, 142, 368, 575, 935, 1346
Tru1I TTAA 5 cut(s) 129, 171, 1215, 1338, 1410
Tru9I TTAA 5 cut(s) 129, 171, 1215, 1338, 1410
TscAI CASTG 6 cut(s) 214, 408, 493, 552, 1011, 1039
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 7 cut(s) 72, 115, 259, 956, 986, 1284, 1290
TspGWI ACGGA 2 cut(s) 530, 1029
TspRI CASTG 6 cut(s) 214, 408, 493, 552, 1011, 1039
VneI GTGCAC 1 cut(s) 1286
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 1 cut(s) 1338
XapI RAATTY 2 cut(s) 81, 850
XbaI TCTAGA 1 cut(s) 749
XceI RCATGY 2 cut(s) 8, 678
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 946
XspI CTAG 4 cut(s) 44, 744, 750, 810
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.