Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006827

Physical Location & Seq

Genomic Coordinates Reverse (-)

15007768 .. 15012857

Gene Structure 5090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G095200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGCATGCTATAAAGGGTGGCTGGGCAGGGCGTACATTTGCCCTGGCTAAAAACAATGAATCTGAAGGAAGGAAGTCCCGAATTCGGCGTTCAAAGGAGGAGAGGAAGGCAATGGTTGAATCCTTTATAAAAACGTACCAGAAACTAAACAATGGGAGTTTCCCATCACTTAATCTGACCCACAAGGAAGTTGGCGGGTCTTTCTACACCGTACGAGAGATTGTCCGAGATATAATCCAGGAAAATAGAGTGCTGGGTCCTGCTAAGTTTACTGCAGAGGAGCAGACCATTGATCATTTCTTGGAACAAAATCCATTGGGTTCCATCGCTACAGAACCACCAAATACTCTGTCAATATCATTAAATCAATCTCAGTTTATCTCCAATCAAAATCAGGGTAGAATTGAAGAACTGGTTTTCACATCGGATGGGCATTTAGCTACACTTGAACGTCAGAATTTTGACAATGGGAAAATCATCAATGGTACTCAAGTTGAAGTGAATAACAAAGAGTTTGAACTGAAATGTACAGAGTTACGAGTAAAAGGACCAGTGGAAACAGAGAAGAATGTTGCTGAAGAATCTGTAGTTCATAATGGGGATTGTATCGGGCCTGAATATCAGATGGTTGACAATGGATTAATCAATGGTAACCAGGTAGATCTGAAAGACAAAAAAACTGAGGAACTGCCATGTACAGAGCTACAAACAATTGAACCTTTGGAAGCAGAGAAGAATGTTGAAGAAGTTCCGGAAACATCTAGGTCGAAAGTGACTCCTATAGCAGCAGATGTGATAGTGGAGACATTTCCATTAAAGCCGGCTAATGAGACAAGTGAGAGCTTGGATGGAAGGTTACAAGAAGTGACAGATTTGGCTATATCTACCGAGGATCGAGTAGAGGAGAATCTTTCAAGTCCATTGCTTGAGAACAATTCCGGCTCACTGGATGAGGAAGCATTAGGAAATGCCAGAGATCCATCACTTGAAAGCTCAAATTGCTCAACCTTTAACGATGGCGTTGTGCGTGAAAAAGGAAGCACAGACCTTAATGTCAAAGCACCTCATAAAGATGTTCCAACATCTGAGATCTTAGTACAGAGTCAGCTGACTGCTGGGCCTAAGGCTATCAAAGCTCCAGACAGCCTACATACGAACCATATAAATAGTACCGGTGGTAGTAGTGAGCTGTCAAAAACCAAAGAGGTGCTTGTGATTGAAGACGAAGTTGATGTTCAATCCAGCGGCAGCTCCCAGAAAGGAAGCAGCCCAACTTTAGACAGAATTAATCTTGAATCATGGGAAGGGAGATCTCAAAAGTCGGCAAAACCAGAAGGTAACCCACTTTGGGATGTATTTAAAGCGTTTATAGACGCCTTTGTGAAATTTTGGTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

467

Amino Acids

51.42

Weight (kDa)

4.86

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52170 AT3G52170 AT3G52170 AT3G52170
fragaria_vesca	FvH4_7g06800 FvH4_7g06800 FvH4_7g06800
malus_domestica	MD02G1237300.v1.1 MD02G1241700.v1.1 MD07G1075000.v1.1
prunus_persica	Prupe.2G095200_v2.0.a1
pyrus_communis	pycom02g20790 pycom07g05890
rosa_chinensis	RchiOBHm_Chr1g0336511
rosa_laevigata	RLG00000029358
rosa_multiflora	Rmu_sc0001981.1_g000012 Rmu_sc0009546.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315540
rosa_rugosa	Rorug01G0125600 Rorug01G0125700 Rorug01G0125800.1
rosa_samantha	Rh1AG146700 Rh1BG114900 Rh1CG138100 Rh1DG153400
rosa_wichuraiana	Rw1G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AasI	GACNNNNNNGTC	1 cut(s)	1052
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	2 cut(s)	195, 1245
AclWI	GGATC	2 cut(s)	900, 971
AcsI	RAATTY	3 cut(s)	81, 457, 1385
AcuI	CTGAAG	2 cut(s)	84, 597
AcyI	GRCGYC	1 cut(s)	1374
AfaI	GTAC	8 cut(s)	34, 137, 213, 487, 529, 697, 1098, 1171
AfiI	CCNNNNNNNGG	2 cut(s)	84, 1348
AgeI	ACCGGT	1 cut(s)	1172
AjnI	CCWGG	3 cut(s)	42, 237, 654
AluBI	AGCT	8 cut(s)	440, 703, 843, 993, 1108, 1136, 1189, 1251
AluI	AGCT	8 cut(s)	440, 703, 843, 993, 1108, 1136, 1189, 1251
Alw26I	GTCTC	2 cut(s)	797, 824
AlwI	GGATC	2 cut(s)	900, 971
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	2 cut(s)	611, 1118
ApeKI	GCWGC	3 cut(s)	785, 1248, 1266
ApoI	RAATTY	3 cut(s)	81, 457, 1385
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AseI	ATTAAT	2 cut(s)	641, 1287
AsiGI	ACCGGT	1 cut(s)	1172
Asp700I	GAANNNNTTC	1 cut(s)	747
AspS9I	GGNCC	4 cut(s)	257, 548, 611, 1118
AvaII	GGWCC	2 cut(s)	257, 548
AxyI	CCTNAGG	1 cut(s)	1122
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbsI	GAAGAC	1 cut(s)	1227
BbvI	GCAGC	3 cut(s)	797, 1260, 1278
BccI	CCATC	7 cut(s)	172, 332, 422, 619, 842, 988, 1010
BciT130I	CCWGG	3 cut(s)	44, 239, 656
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	797, 824
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	4 cut(s)	273, 330, 585, 780
BglII	AGATCT	3 cut(s)	661, 1089, 1310
BisI	GCNGC	4 cut(s)	786, 1246, 1249, 1267
BlsI	GCNGC	4 cut(s)	787, 1247, 1250, 1268
Bme1390I	CCNGG	3 cut(s)	44, 239, 656
Bme18I	GGWCC	2 cut(s)	257, 548
BmgT120I	GGNCC	4 cut(s)	257, 548, 611, 1118
BmiI	GGNNCC	2 cut(s)	258, 322
BmrFI	CCNGG	3 cut(s)	44, 239, 656
BpiI	GAAGAC	1 cut(s)	1227
BpmI	CTGGAG	1 cut(s)	1122
BpuEI	CTTGAG	2 cut(s)	474, 947
BsaHI	GRCGYC	1 cut(s)	1374
BsaJI	CCNNGG	2 cut(s)	42, 888
BsaWI	WCCGGW	2 cut(s)	751, 1172
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 1348
Bse118I	RCCGGY	2 cut(s)	820, 1172
Bse1I	ACTGG	3 cut(s)	417, 551, 951
Bse21I	CCTNAGG	1 cut(s)	1122
Bse3DI	GCAATG	2 cut(s)	117, 920
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	3 cut(s)	44, 239, 656
BseDI	CCNNGG	2 cut(s)	42, 888
BseGI	GGATG	4 cut(s)	433, 853, 955, 1357
BseLI	CCNNNNNNNGG	2 cut(s)	84, 1348
BseMI	GCAATG	2 cut(s)	117, 920
BseMII	CTCAG	3 cut(s)	386, 672, 1077
BseNI	ACTGG	3 cut(s)	417, 551, 951
BseRI	GAGGAG	3 cut(s)	113, 293, 917
BseXI	GCAGC	3 cut(s)	797, 1260, 1278
BseYI	CCCAGC	3 cut(s)	21, 253, 1115
BshFI	GGCC	2 cut(s)	613, 1120
BshTI	ACCGGT	1 cut(s)	1172
BsiSI	CCGG	4 cut(s)	752, 821, 939, 1173
BsiWI	CGTACG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	84, 1348
BsmAI	GTCTC	2 cut(s)	797, 824
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	613, 1120
Bsp13I	TCCGGA	1 cut(s)	751
Bsp1407I	TGTACA	2 cut(s)	527, 695
Bsp143I	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
BspACI	CCGC	2 cut(s)	195, 1245
BspANI	GGCC	2 cut(s)	613, 1120
BspCNI	CTCAG	3 cut(s)	385, 673, 1078
BspEI	TCCGGA	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	258, 322
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	900, 971
BsrDI	GCAATG	2 cut(s)	117, 920
BsrFI	RCCGGY	2 cut(s)	820, 1172
BsrGI	TGTACA	2 cut(s)	527, 695
BsrI	ACTGG	3 cut(s)	417, 551, 951
BssAI	RCCGGY	2 cut(s)	820, 1172
BssECI	CCNNGG	2 cut(s)	42, 888
BssMI	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
BssNI	GRCGYC	1 cut(s)	1374
Bst2UI	CCWGG	3 cut(s)	44, 239, 656
Bst4CI	ACNGT	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	1374
BstAUI	TGTACA	2 cut(s)	527, 695
BstC8I	GCNNGC	2 cut(s)	6, 822
BstDEI	CTNAG	6 cut(s)	264, 372, 681, 1086, 1093, 1122
BstEII	GGTNACC	2 cut(s)	650, 1337
BstF5I	GGATG	4 cut(s)	433, 853, 955, 1357
BstKTI	GATC	6 cut(s)	295, 664, 895, 979, 1092, 1313
BstMAI	GTCTC	2 cut(s)	797, 824
BstMBI	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
BstMWI	GCNNNNNNNGC	2 cut(s)	999, 1133
BstNI	CCWGG	3 cut(s)	44, 239, 656
BstNSI	RCATGY	1 cut(s)	8
BstPI	GGTNACC	2 cut(s)	650, 1337
BstSCI	CCNGG	3 cut(s)	42, 237, 654
BstSFI	CTRYAG	4 cut(s)	273, 330, 585, 780
BstV1I	GCAGC	3 cut(s)	797, 1260, 1278
BstV2I	GAAGAC	1 cut(s)	1227
BstX2I	RGATCY	4 cut(s)	661, 976, 1089, 1310
BstYI	RGATCY	4 cut(s)	661, 976, 1089, 1310
Bsu36I	CCTNAGG	1 cut(s)	1122
BsuRI	GGCC	2 cut(s)	613, 1120
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	433, 853, 955, 1357
BtsIMutI	CAGTG	2 cut(s)	558, 944
Cac8I	GCNNGC	2 cut(s)	6, 822
Cfr10I	RCCGGY	2 cut(s)	820, 1172
Cfr13I	GGNCC	4 cut(s)	257, 548, 611, 1118
CseI	GACGC	1 cut(s)	1382
CsiI	ACCWGGT	1 cut(s)	654
Csp6I	GTAC	8 cut(s)	33, 136, 212, 486, 528, 696, 1097, 1170
CspAI	ACCGGT	1 cut(s)	1172
CviAII	CATG	3 cut(s)	5, 693, 1299
CviQI	GTAC	8 cut(s)	33, 136, 212, 486, 528, 696, 1097, 1170
DdeI	CTNAG	6 cut(s)	264, 372, 681, 1086, 1093, 1122
DpnI	GATC	6 cut(s)	294, 663, 894, 978, 1091, 1312
DpnII	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
DraI	TTTAAA	1 cut(s)	1360
DrdI	GACNNNNNNGTC	1 cut(s)	1052
DseDI	GACNNNNNNGTC	1 cut(s)	1052
Eco47I	GGWCC	2 cut(s)	257, 548
Eco57I	CTGAAG	2 cut(s)	84, 597
Eco81I	CCTNAGG	1 cut(s)	1122
Eco91I	GGTNACC	2 cut(s)	650, 1337
EcoO109I	RGGNCCY	1 cut(s)	257
EcoO65I	GGTNACC	2 cut(s)	650, 1337
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	3 cut(s)	42, 237, 654
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 696, 1302
FalI	AAGNNNNNCTT	2 cut(s)	1194, 1226
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	4, 692, 1298
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	786, 1246, 1249, 1267
FokI	GGATG	4 cut(s)	440, 860, 962, 1364
Fsp4HI	GCNGC	4 cut(s)	786, 1246, 1249, 1267
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	4 cut(s)	786, 1246, 1249, 1267
GsaI	CCCAGC	3 cut(s)	25, 257, 1119
GsuI	CTGGAG	1 cut(s)	1122
HaeIII	GGCC	2 cut(s)	613, 1120
HapII	CCGG	4 cut(s)	752, 821, 939, 1173
HgaI	GACGC	1 cut(s)	1382
Hin1I	GRCGYC	1 cut(s)	1374
Hin1II	CATG	3 cut(s)	8, 696, 1302
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	7 cut(s)	59, 119, 581, 775, 907, 1102, 1295
HpaII	CCGG	4 cut(s)	752, 821, 939, 1173
Hpy166II	GTNNAC	2 cut(s)	270, 631
Hpy188I	TCNGA	9 cut(s)	64, 177, 227, 427, 456, 624, 666, 1087, 1396
Hpy188III	TCNNGA	4 cut(s)	78, 752, 1139, 1292
Hpy8I	GTNNAC	2 cut(s)	270, 631
HpyAV	CCTTC	6 cut(s)	59, 63, 100, 846, 1298, 1328
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	134, 451
HpyCH4V	TGCA	2 cut(s)	4, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	999, 1133
HpyF3I	CTNAG	6 cut(s)	264, 372, 681, 1086, 1093, 1122
HpySE526I	ACGT	2 cut(s)	134, 451
Hsp92I	GRCGYC	1 cut(s)	1374
Hsp92II	CATG	3 cut(s)	8, 696, 1302
Kpn2I	TCCGGA	1 cut(s)	751
KroI	GCCGGC	1 cut(s)	820
KroNI	GCCGGC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
LmnI	GCTCC	3 cut(s)	280, 1141, 1256
Lsp1109I	GCAGC	3 cut(s)	797, 1260, 1278
MabI	ACCWGGT	1 cut(s)	654
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	2 cut(s)	134, 451
MaeIII	GTNAC	6 cut(s)	534, 650, 772, 855, 865, 1337
MalI	GATC	6 cut(s)	294, 663, 894, 978, 1091, 1312
MboI	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
MboII	GAAGA	6 cut(s)	419, 577, 590, 745, 755, 1232
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	4 cut(s)	661, 976, 1089, 1310
MluCI	AATT	8 cut(s)	81, 402, 457, 711, 934, 997, 1284, 1385
MlyI	GAGTC	2 cut(s)	769, 1111
MmeI	TCCRAC	1 cut(s)	1103
MnlI	CCTC	9 cut(s)	91, 96, 271, 676, 883, 895, 946, 1074, 1198
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	751
MroNI	GCCGGC	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	8 cut(s)	171, 362, 641, 815, 1011, 1050, 1287, 1359
MslI	CAYNNNNRTG	1 cut(s)	1071
MspA1I	CMGCKG	2 cut(s)	1108, 1245
MspI	CCGG	4 cut(s)	752, 821, 939, 1173
MspR9I	CCNGG	3 cut(s)	44, 239, 656
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	3 cut(s)	44, 239, 656
MwoI	GCNNNNNNNGC	2 cut(s)	999, 1133
NaeI	GCCGGC	1 cut(s)	822
NdeII	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
NgoMIV	GCCGGC	1 cut(s)	820
NlaIII	CATG	3 cut(s)	8, 696, 1302
NlaIV	GGNNCC	2 cut(s)	258, 322
NmuCI	GTSAC	2 cut(s)	772, 865
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PdiI	GCCGGC	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	5 cut(s)	59, 119, 581, 907, 1295
Pfl23II	CGTACG	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	1172
PkrI	GCNGC	4 cut(s)	787, 1247, 1250, 1268
PleI	GAGTC	2 cut(s)	769, 1110
PpsI	GAGTC	2 cut(s)	769, 1110
PpuMI	RGGWCCY	1 cut(s)	257
PshBI	ATTAAT	2 cut(s)	641, 1287
PsiI	TTATAA	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	42, 237, 654
PspEI	GGTNACC	2 cut(s)	650, 1337
PspFI	CCCAGC	3 cut(s)	21, 253, 1115
PspGI	CCWGG	3 cut(s)	42, 237, 654
PspLI	CGTACG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	258, 322
PspPI	GGNCC	4 cut(s)	257, 548, 611, 1118
PspPPI	RGGWCCY	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	4 cut(s)	661, 976, 1089, 1310
PvuII	CAGCTG	1 cut(s)	1108
RsaI	GTAC	8 cut(s)	34, 137, 213, 487, 529, 697, 1098, 1171
RsaNI	GTAC	8 cut(s)	33, 136, 212, 486, 528, 696, 1097, 1170
RseI	CAYNNNNRTG	1 cut(s)	1071
SaqAI	TTAA	8 cut(s)	171, 362, 641, 815, 1011, 1050, 1287, 1359
SatI	GCNGC	4 cut(s)	786, 1246, 1249, 1267
Sau3AI	GATC	6 cut(s)	292, 661, 892, 976, 1089, 1310
Sau96I	GGNCC	4 cut(s)	257, 548, 611, 1118
SchI	GAGTC	2 cut(s)	769, 1111
ScrFI	CCNGG	3 cut(s)	44, 239, 656
SexAI	ACCWGGT	1 cut(s)	654
SfcI	CTRYAG	4 cut(s)	273, 330, 585, 780
SinI	GGWCC	2 cut(s)	257, 548
SmiMI	CAYNNNNRTG	1 cut(s)	1071
SmlI	CTYRAG	2 cut(s)	489, 926
SmoI	CTYRAG	2 cut(s)	489, 926
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	8 cut(s)	81, 402, 457, 711, 934, 997, 1284, 1385
SsiI	CCGC	2 cut(s)	195, 1245
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	3 cut(s)	42, 237, 654
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	137, 454
TaqI	TCGA	2 cut(s)	767, 895
TasI	AATT	8 cut(s)	81, 402, 457, 711, 934, 997, 1284, 1385
TatI	WGTACW	3 cut(s)	527, 695, 1096
TauI	GCSGC	1 cut(s)	1248
TfiI	GAWTC	5 cut(s)	59, 119, 581, 907, 1295
Tru1I	TTAA	8 cut(s)	171, 362, 641, 815, 1011, 1050, 1287, 1359
Tru9I	TTAA	8 cut(s)	171, 362, 641, 815, 1011, 1050, 1287, 1359
TscAI	CASTG	2 cut(s)	558, 951
TseFI	GTSAC	2 cut(s)	772, 865
TseI	GCWGC	3 cut(s)	785, 1248, 1266
Tsp45I	GTSAC	2 cut(s)	772, 865
TspDTI	ATGAA	2 cut(s)	72, 581
TspRI	CASTG	2 cut(s)	558, 951
VpaK11BI	GGWCC	2 cut(s)	257, 548
VspI	ATTAAT	2 cut(s)	641, 1287
XapI	RAATTY	3 cut(s)	81, 457, 1385
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	1 cut(s)	762
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.