Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006827

Physical Location & Seq

Genomic Coordinates Forward (+)

28449964 .. 28452919

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1237300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCATTCTATAAAGGGTAGTTGGGTTGGGCAGACATTCGCCCTAGCTAAAAATAATGAATCTGAAGGAAGGAGGTCCAGAATTCGGCGTTCAAAGGAAGAGAGGAAGGCAATGCAGACCATTGATCAGTTTTGGGAACACAATCCATTGGGTACCATTGCTGCAGAACCACAAAATACTTTGTCAATATCATCAAATGAATTGCTGTTCGTCACCAATCAAAATCAGGGTGTAATTGAACAACTTGTTTTCGCTTCCGATGGGCATTTAGTTGCACCTGAACATCAGATGTTTGAGAATGGACGAATCATCAATGGTACTCAAGTAGAAGTGAATGACAAAGAATTTAATGAACCCAAAAGTACAGAGTTACAAGCAAATGGACCTGTGGAAATAGAGAAGCATGTTGCTGTTGAATCTATAGATTCTAATGGGCATTGTATTGGTCCTGAATATCAGAGTTTTGACAATGGACTAATCAATGGTAGCCAGATAGATAGGAAAGATAAAGAAAGGGAGGAACGAATGTGCACAGAACTGCAAACAGTTGAACCTTCGGAAGCAGAGAAGAATGCTGAAGACGTTCGGGCAACATCCAAGTCTAATGTGAATCCTTTAACAGCAGATGTGATAGTGGAGACATTCCCATTGAAGCCAGTAAATGCGACACCTGAGGGCTTGGATGGAAGGTTACAAGAAGTAACGGATTTGACTAAGTCTTCCAAGGACAAGGGAACTAGAGGGATGGAGTTAGCTGGTGTTGATAGTTTGCAAGCTGACAAAGCTCCAGATAGCTTACATACAAAGATTACCAACGGTACCAGTGGTAGTAGTGAGCAATCGAAAACCAAAGAGGTGGTTGTGATTGAAGATGAAGTTGATGTCCAGACCAGCGGTAGCTTGAAGAAGGGAAGCAAACCAACTTTGGACAGAATTAACCTTGAATCATGGGAAGGTGCATCTAAAAAGACCAGACCAGAAGGTAACCCACTTTGGGATGTATTTAAAGCGTTTTTAGACGCCCTTGTGAAATTCTGGTCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

38.52

Weight (kDa)

5.0

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52170 AT3G52170 AT3G52170 AT3G52170
fragaria_vesca	FvH4_7g06800 FvH4_7g06800 FvH4_7g06800
malus_domestica	MD02G1237300.v1.1 MD02G1241700.v1.1 MD07G1075000.v1.1
prunus_persica	Prupe.2G095200_v2.0.a1
pyrus_communis	pycom02g20790 pycom07g05890
rosa_chinensis	RchiOBHm_Chr1g0336511
rosa_laevigata	RLG00000029358
rosa_multiflora	Rmu_sc0001981.1_g000012 Rmu_sc0009546.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315540
rosa_rugosa	Rorug01G0125600 Rorug01G0125700 Rorug01G0125800.1
rosa_samantha	Rh1AG146700 Rh1BG114900 Rh1CG138100 Rh1DG153400
rosa_wichuraiana	Rw1G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	152, 818
AccB1I	GGYRCC	2 cut(s)	152, 818
AciI	CCGC	1 cut(s)	894
AcsI	RAATTY	3 cut(s)	81, 344, 1031
AcuI	CTGAAG	2 cut(s)	84, 597
AcyI	GRCGYC	1 cut(s)	1020
AfaI	GTAC	4 cut(s)	154, 319, 364, 820
AfiI	CCNNNNNNNGG	2 cut(s)	84, 994
AgsI	TTSAA	8 cut(s)	93, 239, 416, 551, 652, 869, 904, 944
AluBI	AGCT	6 cut(s)	47, 755, 776, 785, 795, 900
AluI	AGCT	6 cut(s)	47, 755, 776, 785, 795, 900
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	632
Alw44I	GTGCAC	1 cut(s)	529
ApaLI	GTGCAC	1 cut(s)	529
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	3 cut(s)	81, 344, 1031
Asp700I	GAANNNNTTC	1 cut(s)	582
Asp718I	GGTACC	2 cut(s)	152, 818
AspS9I	GGNCC	4 cut(s)	75, 383, 446, 1038
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	4 cut(s)	75, 383, 446, 1038
AxyI	CCTNAGG	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	533
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BanI	GGYRCC	2 cut(s)	152, 818
BbsI	GAAGAC	2 cut(s)	585, 711
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	254, 677, 739
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	2 cut(s)	44, 738
BfmI	CTRYAG	2 cut(s)	162, 420
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	4 cut(s)	75, 383, 446, 1038
BmgT120I	GGNCC	4 cut(s)	75, 383, 446, 1038
BmiI	GGNNCC	2 cut(s)	154, 820
BmsI	GCATC	1 cut(s)	968
BpiI	GAAGAC	2 cut(s)	585, 711
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	1020
BsaJI	CCNNGG	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 994
Bse1I	ACTGG	2 cut(s)	656, 822
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	2 cut(s)	117, 156
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	4 cut(s)	593, 688, 750, 1003
BseLI	CCNNNNNNNGG	2 cut(s)	84, 994
BseMI	GCAATG	2 cut(s)	117, 156
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	2 cut(s)	656, 822
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	148
BshNI	GGYRCC	2 cut(s)	152, 818
BsiHKAI	GWGCWC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	84, 994
BsmAI	GTCTC	1 cut(s)	632
BsmI	GAATGC	2 cut(s)	4, 577
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	894
BspCNI	CTCAG	1 cut(s)	664
BspLI	GGNNCC	2 cut(s)	154, 820
BspMAI	CTGCAG	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	152, 818
BsrDI	GCAATG	2 cut(s)	117, 156
BsrI	ACTGG	2 cut(s)	656, 822
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	1 cut(s)	124
BssNI	GRCGYC	1 cut(s)	1020
BssT1I	CCWWGG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	547, 818
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	1020
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	2 cut(s)	672, 714
BstEII	GGTNACC	1 cut(s)	983
BstF5I	GGATG	4 cut(s)	593, 688, 750, 1003
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNSI	RCATGY	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	983
BstSFI	CTRYAG	2 cut(s)	162, 420
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	585, 711
BstXI	CCANNNNNNTGG	1 cut(s)	856
Bsu36I	CCTNAGG	1 cut(s)	672
BtsCI	GGATG	4 cut(s)	593, 688, 750, 1003
BtsIMutI	CAGTG	1 cut(s)	829
Cac8I	GCNNGC	1 cut(s)	774
Cfr13I	GGNCC	4 cut(s)	75, 383, 446, 1038
CseI	GACGC	1 cut(s)	1028
Csp6I	GTAC	4 cut(s)	153, 318, 363, 819
CviAII	CATG	2 cut(s)	404, 948
CviJI	RGCY	9 cut(s)	47, 489, 655, 678, 755, 776, 785, 795, 900
CviKI_1	RGCY	9 cut(s)	47, 489, 655, 678, 755, 776, 785, 795, 900
CviQI	GTAC	4 cut(s)	153, 318, 363, 819
DdeI	CTNAG	2 cut(s)	672, 714
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	1006
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	723
Eco47I	GGWCC	4 cut(s)	75, 383, 446, 1038
Eco57I	CTGAAG	2 cut(s)	84, 597
Eco81I	CCTNAGG	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	983
EcoO65I	GGTNACC	1 cut(s)	983
EcoRI	GAATTC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	723
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	2 cut(s)	407, 951
FaiI	YATR	5 cut(s)	11, 405, 422, 801, 949
FatI	CATG	2 cut(s)	403, 947
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	4 cut(s)	580, 695, 757, 1010
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	44, 738
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	771
HgaI	GACGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	1020
Hin1II	CATG	2 cut(s)	407, 951
HinfI	GANTC	6 cut(s)	59, 306, 416, 425, 610, 944
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	6 cut(s)	64, 259, 288, 459, 559, 1042
Hpy188III	TCNNGA	4 cut(s)	78, 449, 788, 886
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	8 cut(s)	59, 63, 100, 564, 681, 901, 947, 974
HpyCH4III	ACNGT	2 cut(s)	547, 818
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	8 cut(s)	4, 115, 164, 275, 531, 541, 772, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	2 cut(s)	672, 714
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	1020
Hsp92II	CATG	2 cut(s)	407, 951
KpnI	GGTACC	2 cut(s)	156, 822
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	968
MaeI	CTAG	2 cut(s)	44, 738
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	5 cut(s)	211, 369, 690, 700, 983
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	6 cut(s)	110, 580, 590, 711, 881, 916
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	6 cut(s)	81, 200, 234, 344, 933, 1031
MnlI	CCTC	6 cut(s)	66, 96, 511, 667, 734, 847
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	4 cut(s)	348, 617, 936, 1005
MspA1I	CMGCKG	1 cut(s)	894
Mva1269I	GAATGC	2 cut(s)	4, 577
MwoI	GCNNNNNNNGC	1 cut(s)	782
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	407, 951
NlaIV	GGNNCC	2 cut(s)	154, 820
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	407
PctI	GAATGC	2 cut(s)	4, 577
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	6 cut(s)	59, 306, 416, 425, 610, 944
PflFI	GACNNNGTC	1 cut(s)	715
PkrI	GCNGC	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	983
PspN4I	GGNNCC	2 cut(s)	154, 820
PspPI	GGNCC	4 cut(s)	75, 383, 446, 1038
PstI	CTGCAG	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	715
RsaI	GTAC	4 cut(s)	154, 319, 364, 820
RsaNI	GTAC	4 cut(s)	153, 318, 363, 819
SaqAI	TTAA	4 cut(s)	348, 617, 936, 1005
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	4 cut(s)	75, 383, 446, 1038
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	968
SfcI	CTRYAG	2 cut(s)	162, 420
SinI	GGWCC	4 cut(s)	75, 383, 446, 1038
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	6 cut(s)	81, 200, 234, 344, 933, 1031
SsiI	CCGC	1 cut(s)	894
SspMI	CTAG	2 cut(s)	44, 738
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	2 cut(s)	547, 818
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	842
TasI	AATT	6 cut(s)	81, 200, 234, 344, 933, 1031
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	6 cut(s)	59, 306, 416, 425, 610, 944
Tru1I	TTAA	4 cut(s)	348, 617, 936, 1005
Tru9I	TTAA	4 cut(s)	348, 617, 936, 1005
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	72, 213, 366, 888
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	1 cut(s)	829
Tth111I	GACNNNGTC	1 cut(s)	715
VneI	GTGCAC	1 cut(s)	529
VpaK11BI	GGWCC	4 cut(s)	75, 383, 446, 1038
XapI	RAATTY	3 cut(s)	81, 344, 1031
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	44, 738
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.