Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0006827

Physical Location & Seq

Genomic Coordinates Forward (+)

38745 .. 40155

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggggttagccactggtgttgatagtacgctgttggatacagtatatttcgtgaatagcttggtcgatgataaagtagtggtgaaaagccccttggttggaaacaaatccagctcagtaaatgaggaagccttagaaattgtcagagatccatcactggagacctcaaatcgctcaacccttgaaggaaatattatacatgaaaaaggaagcacagaccttaagataataaaagctccagatacaaagaaccttaatggtaccagcgtttgcgatgggctgtcacaaaccaaagaggtgcttgtgattgaagatgaagttggtgtgcactccagcgcagggttgcaaaaaggaagcaacactttagacaggattagtcttgaatcgtggcaaaaggcgtctagagattccacaaatcgagaaggcaaatcactttgggctgtatttaaagagtacatagacgccattgtgaagttttggtctaatgagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.87

Weight (kDa)

4.88

Isoelectric Point (pI)

25.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52170 AT3G52170 AT3G52170 AT3G52170
fragaria_vesca	FvH4_7g06800 FvH4_7g06800 FvH4_7g06800
malus_domestica	MD02G1237300.v1.1 MD02G1241700.v1.1 MD07G1075000.v1.1
prunus_persica	Prupe.2G095200_v2.0.a1
pyrus_communis	pycom02g20790 pycom07g05890
rosa_chinensis	RchiOBHm_Chr1g0336511
rosa_laevigata	RLG00000029358
rosa_multiflora	Rmu_sc0001981.1_g000012 Rmu_sc0009546.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315540
rosa_rugosa	Rorug01G0125600 Rorug01G0125700 Rorug01G0125800.1
rosa_samantha	Rh1AG146700 Rh1BG114900 Rh1CG138100 Rh1DG153400
rosa_wichuraiana	Rw1G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	143
AcyI	GRCGYC	2 cut(s)	398, 462
AfaI	GTAC	3 cut(s)	28, 262, 455
AfiI	CCNNNNNNNGG	2 cut(s)	98, 339
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	185, 311, 383
AjuI	GAANNNNNNNTTGG	4 cut(s)	77, 109, 303, 335
AluBI	AGCT	4 cut(s)	60, 114, 236, 490
AluI	AGCT	4 cut(s)	60, 114, 236, 490
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	143
ApaLI	GTGCAC	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	330
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BanI	GGYRCC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	2 cut(s)	160, 269
BciVI	GTATCC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	262
BpmI	CTGGAG	3 cut(s)	179, 222, 316
BsaHI	GRCGYC	2 cut(s)	398, 462
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 339
Bse1I	ACTGG	2 cut(s)	19, 162
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	98, 339
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	19, 162
BseSI	GKGCMC	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	98, 339
BsmAI	GTCTC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	19, 162
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	2 cut(s)	398, 462
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	2 cut(s)	398, 462
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	115, 133
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	12, 155
CfoI	GCGC	1 cut(s)	338
CseI	GACGC	2 cut(s)	387, 470
Csp6I	GTAC	3 cut(s)	27, 261, 454
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	9 cut(s)	11, 60, 90, 114, 131, 236, 280, 440, 490
CviKI_1	RGCY	9 cut(s)	11, 60, 90, 114, 131, 236, 280, 440, 490
CviQI	GTAC	3 cut(s)	27, 261, 454
DdeI	CTNAG	2 cut(s)	115, 133
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraI	TTTAAA	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	203
FaiI	YATR	4 cut(s)	46, 197, 201, 458
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 346, 378
FatI	CATG	1 cut(s)	199
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	337
GsuI	CTGGAG	3 cut(s)	179, 222, 316
HgaI	GACGC	2 cut(s)	387, 470
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	398, 462
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	383, 407
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	5 cut(s)	52, 239, 380, 402, 419
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	179, 416
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	328, 346
HpyF3I	CTNAG	2 cut(s)	115, 133
Hsp92I	GRCGYC	2 cut(s)	398, 462
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	124, 143, 252, 277, 324, 346, 355
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	15, 79
MnlI	CCTC	3 cut(s)	118, 175, 289
MseI	TTAA	3 cut(s)	222, 255, 447
MspCI	CTTAAG	1 cut(s)	221
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	383, 407
PspN4I	GGNNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	3 cut(s)	28, 262, 455
RsaNI	GTAC	3 cut(s)	27, 261, 454
SaqAI	TTAA	3 cut(s)	222, 255, 447
Sau3AI	GATC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	8 cut(s)	62, 116, 167, 222, 238, 255, 300, 492
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	138
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	66, 418
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	2 cut(s)	383, 407
Tru1I	TTAA	3 cut(s)	222, 255, 447
Tru9I	TTAA	3 cut(s)	222, 255, 447
TscAI	CASTG	2 cut(s)	19, 162
TseFI	GTSAC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	216, 330
TspRI	CASTG	2 cut(s)	19, 162
Vha464I	CTTAAG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	401
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.