AT3G52880

monodehydroascorbate reductase, cytoplasmic isoform 3

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
19601167 .. 19604597
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52880.1

Sequence Viewer

Length: 1305 bp
ATGGCGGAGAAGAGCTTTAAGTACATCATCCTCGGCGGCGGCGTCTCTGCCGGATACGCAGCTAAGGAGTTTGCCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAGGGGCTGCTAGACTTCCAGGTTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAAGAGTCTTGTCAGTGCAACTGGGGATGTCTTCAAGTATCAGACGCTCATAATTGCAACTGGTTCTACTGTTCTCAGATTGACTGATTTTGGAGTAAAAGGTGCAGACTCTAAGAATATCCTCTATCTGAGAGAGATTGATGATGCCGACAAATTGGTTGAAGCAATTAAAGCTAAGAAAGGTGGAAAGGCTGTAGTTGTTGGCGGAGGTTACATTGGTCTTGAGCTTAGTGCAGTTTTAAGGATCAACAATTTAGATGTCACTATGGTTTTCCCTGAACCTTGGTGCATGCCTAGGCTTTTCACCGCCGATATTGCTGCTTTCTATGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACAGGTCGAGGAAGATAAAGGTGGAATTAAGACCGATGCATTCTTCAAAACAAGTGTTCCAGATGTTTACGCTGTTGGTGACGTTGCTACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAGGGTCGAGCATGTTGACCATTCCCGCAAATCAGCAGAGCAAGCTGTTAAGGCGATCAAAGCGGCTGAGGGAGGCGCAGCGGTGGAGGAATACGACTATCTTCCATTCTTCTACTCTCGCTCCTTTGATCTCTCATGGCAGTTCTACGGAGACAACGTAGGAGACTCTGTGTTATTTGGAGACAGCAATCCATCAAACCCAAAACCAAGATTTGGAGCATATTGGGTTCAAGGTGGTAAAGTGGTTGGAGCATTCATGGAGGGAGGTAGTGGTGATGAGAACAAAGCCTTGGCTAAAGTCGCCAAAGCTCGACCTTCTGCAGAGAGTCTCGACGAGCTCGTGAAACAAGGAATTTCCTTCGCAGCTAAGATCTGA

Protein Analysis

434

Amino Acids

46.49

Weight (kDa)

6.41

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 6 - 322 1.2e-56 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 165 - 247 2e-14 Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C PF21791 344 - 431 3e-40 Monodehydroascorbate reductase 3-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1142
AciI CCGC 9 cut(s) 5, 36, 39, 122, 510, 612, 955, 992, 1010
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 1 cut(s) 1281
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 23, 726, 917
AfiI CCNNNNNNNGG 2 cut(s) 81, 1142
AgsI TTSAA 7 cut(s) 89, 340, 467, 805, 856, 910, 1160
AjiI CACGTC 1 cut(s) 925
AjnI CCWGG 2 cut(s) 91, 190
AjuI GAANNNNNNNTTGG 2 cut(s) 1202, 1234
Alw21I GWGCWC 1 cut(s) 1269
Alw26I GTCTC 7 cut(s) 49, 629, 915, 1074, 1086, 1104, 1262
AlwI GGATC 1 cut(s) 557
ApeKI GCWGC 5 cut(s) 59, 179, 623, 1007, 1292
ApoI RAATTY 1 cut(s) 1281
AspA2I CCTAGG 1 cut(s) 599
AspLEI GCGC 1 cut(s) 1007
AsuHPI GGTGA 4 cut(s) 601, 727, 899, 1214
AvrII CCTAGG 1 cut(s) 599
BanII GRGCYC 1 cut(s) 1269
BauI CACGAG 1 cut(s) 1268
BbsI GAAGAC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 1269
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 4 cut(s) 71, 166, 610, 1019
BccI CCATC 2 cut(s) 731, 1129
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 2 cut(s) 93, 192
BciVI GTATCC 1 cut(s) 47
BcoDI GTCTC 7 cut(s) 49, 629, 915, 1074, 1086, 1104, 1262
BfaI CTAG 2 cut(s) 183, 600
BfmI CTRYAG 2 cut(s) 498, 1248
BfuI GTATCC 1 cut(s) 47
BglII AGATCT 1 cut(s) 1299
BisI GCNGC 8 cut(s) 37, 40, 60, 180, 624, 993, 1008, 1293
BlnI CCTAGG 1 cut(s) 599
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 8 cut(s) 38, 41, 61, 181, 625, 994, 1009, 1294
Bme1390I CCNGG 2 cut(s) 93, 192
BmgBI CACGTC 1 cut(s) 925
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 93, 192
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 3 cut(s) 439, 692, 835
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 328
Bpu10I CCTNAGC 2 cut(s) 63, 996
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 548, 716
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 31, 587, 599, 1218
BsaXI ACNNNNNCTCC 6 cut(s) 1034, 1064, 1071, 1083, 1101, 1113
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 1142
Bse1I ACTGG 2 cut(s) 331, 370
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 93, 192
BseDI CCNNGG 4 cut(s) 31, 587, 599, 1218
BseGI GGATG 4 cut(s) 27, 337, 742, 794
BseLI CCNNNNNNNGG 2 cut(s) 81, 1142
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 4 cut(s) 394, 425, 713, 987
BseNI ACTGG 2 cut(s) 331, 370
BseXI GCAGC 4 cut(s) 71, 166, 610, 1019
BsgI GTGCAG 3 cut(s) 129, 429, 558
BsiHKAI GWGCWC 1 cut(s) 1269
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 2 cut(s) 81, 1142
BsmAI GTCTC 7 cut(s) 49, 629, 915, 1074, 1086, 1104, 1262
BsmBI CGTCTC 2 cut(s) 49, 915
BsmFI GGGAC 1 cut(s) 822
BsmI GAATGC 2 cut(s) 848, 1181
Bsp1286I GDGCHC 1 cut(s) 1269
Bsp143I GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
Bsp1720I GCTNAGC 1 cut(s) 699
BspACI CCGC 9 cut(s) 5, 36, 39, 122, 510, 612, 955, 992, 1010
BspCNI CTCAG 4 cut(s) 393, 426, 712, 988
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 1252
BspPI GGATC 1 cut(s) 557
BspQI GCTCTTC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 2 cut(s) 331, 370
BssECI CCNNGG 4 cut(s) 31, 587, 599, 1218
BssMI GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 1268
BssT1I CCWWGG 3 cut(s) 587, 599, 1218
Bst2BI CACGAG 1 cut(s) 1268
Bst2UI CCWGG 2 cut(s) 93, 192
Bst4CI ACNGT 2 cut(s) 376, 679
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 596, 972
BstF5I GGATG 4 cut(s) 27, 337, 742, 794
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 6 cut(s) 298, 552, 666, 987, 1060, 1302
BstMAI GTCTC 7 cut(s) 49, 629, 915, 1074, 1086, 1104, 1262
BstMBI GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
BstMWI GCNNNNNNNGC 7 cut(s) 56, 476, 620, 971, 980, 989, 1229
BstNI CCWGG 2 cut(s) 93, 192
BstNSI RCATGY 2 cut(s) 598, 944
BstSCI CCNGG 2 cut(s) 91, 190
BstSFI CTRYAG 2 cut(s) 498, 1248
BstV1I GCAGC 4 cut(s) 71, 166, 610, 1019
BstV2I GAAGAC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 1299
BstYI RGATCY 1 cut(s) 1299
BsuI GTATCC 1 cut(s) 47
BtrI CACGTC 1 cut(s) 925
BtsCI GGATG 4 cut(s) 27, 337, 742, 794
BtsIMutI CAGTG 2 cut(s) 325, 684
Cac8I GCNNGC 2 cut(s) 596, 972
CfoI GCGC 1 cut(s) 1007
CseI GACGC 2 cut(s) 31, 358
Csp6I GTAC 3 cut(s) 22, 725, 916
CviAII CATG 4 cut(s) 595, 941, 1065, 1186
CviQI GTAC 3 cut(s) 22, 725, 916
DpnI GATC 6 cut(s) 297, 551, 665, 986, 1059, 1301
DpnII GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 2 cut(s) 20, 525
Ecl136II GAGCTC 1 cut(s) 1267
Eco130I CCWWGG 3 cut(s) 587, 599, 1218
Eco24I GRGCYC 1 cut(s) 1269
Eco53kI GAGCTC 1 cut(s) 1267
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 1267
EcoRII CCWGG 2 cut(s) 91, 190
EcoT14I CCWWGG 3 cut(s) 587, 599, 1218
EcoT22I ATGCAT 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 1269
ErhI CCWWGG 3 cut(s) 587, 599, 1218
Esp3I CGTCTC 2 cut(s) 49, 915
FaeI CATG 4 cut(s) 598, 944, 1068, 1189
FaqI GGGAC 1 cut(s) 822
FatI CATG 4 cut(s) 594, 940, 1064, 1185
FauI CCCGC 1 cut(s) 962
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 8 cut(s) 37, 40, 60, 180, 624, 993, 1008, 1293
FokI GGATG 4 cut(s) 14, 344, 749, 781
FriOI GRGCYC 1 cut(s) 1269
Fsp4HI GCNGC 8 cut(s) 37, 40, 60, 180, 624, 993, 1008, 1293
FspBI CTAG 2 cut(s) 183, 600
GlaI GCGC 1 cut(s) 1006
GluI GCNGC 8 cut(s) 37, 40, 60, 180, 624, 993, 1008, 1293
HapII CCGG 1 cut(s) 51
HgaI GACGC 2 cut(s) 31, 358
HhaI GCGC 1 cut(s) 1007
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 598, 944, 1068, 1189
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 5 cut(s) 239, 310, 413, 1094, 1255
HpaII CCGG 1 cut(s) 51
HphI GGTGA 4 cut(s) 601, 727, 899, 1214
Hpy166II GTNNAC 3 cut(s) 693, 877, 946
Hpy188I TCNGA 4 cut(s) 348, 383, 435, 1304
Hpy188III TCNNGA 7 cut(s) 112, 170, 236, 527, 869, 1259, 1270
Hpy8I GTNNAC 3 cut(s) 693, 877, 946
Hpy99I CGWCG 1 cut(s) 1265
HpyAV CCTTC 5 cut(s) 167, 712, 924, 1254, 1297
HpyCH4III ACNGT 2 cut(s) 376, 679
HpyCH4IV ACGT 3 cut(s) 891, 924, 1086
HpyCH4V TGCA 9 cut(s) 146, 323, 362, 410, 539, 594, 782, 848, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 476, 620, 971, 980, 989, 1229
HpySE526I ACGT 3 cut(s) 891, 924, 1086
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 598, 944, 1068, 1189
HspAI GCGC 1 cut(s) 1005
Kzo9I GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 4 cut(s) 133, 1055, 1145, 1178
Lsp1109I GCAGC 4 cut(s) 71, 166, 610, 1019
LweI GCATC 3 cut(s) 439, 692, 835
MaeI CTAG 2 cut(s) 183, 600
MaeII ACGT 3 cut(s) 891, 924, 1086
MaeIII GTNAC 3 cut(s) 515, 565, 887
MalI GATC 6 cut(s) 297, 551, 665, 986, 1059, 1301
MboI GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
MboII GAAGA 7 cut(s) 22, 328, 673, 833, 844, 1022, 1030
MflI RGATCY 1 cut(s) 1299
MhlI GDGCHC 1 cut(s) 1269
MluCI AATT 8 cut(s) 98, 258, 357, 458, 471, 556, 834, 1281
MlyI GAGTC 4 cut(s) 319, 407, 1088, 1264
MmeI TCCRAC 1 cut(s) 1156
Mph1103I ATGCAT 1 cut(s) 850
MseI TTAA 6 cut(s) 18, 474, 545, 669, 837, 978
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 93, 192
Mva1269I GAATGC 2 cut(s) 848, 1181
MvaI CCWGG 2 cut(s) 93, 192
MwoI GCNNNNNNNGC 7 cut(s) 56, 476, 620, 971, 980, 989, 1229
NdeI CATATG 1 cut(s) 133
NdeII GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
NlaIII CATG 4 cut(s) 598, 944, 1068, 1189
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 565, 887
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 2 cut(s) 598, 944
PaeI GCATGC 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 1083, 1266
PctI GAATGC 2 cut(s) 848, 1181
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 1142
PkrI GCNGC 8 cut(s) 38, 41, 61, 181, 625, 994, 1009, 1294
PleI GAGTC 4 cut(s) 318, 407, 1088, 1263
PpsI GAGTC 4 cut(s) 318, 407, 1088, 1263
Psp124BI GAGCTC 1 cut(s) 1269
Psp6I CCWGG 2 cut(s) 91, 190
PspGI CCWGG 2 cut(s) 91, 190
PspN4I GGNNCC 1 cut(s) 129
PstI CTGCAG 1 cut(s) 1252
PsuI RGATCY 1 cut(s) 1299
RsaI GTAC 3 cut(s) 23, 726, 917
RsaNI GTAC 3 cut(s) 22, 725, 916
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 1269
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 6 cut(s) 18, 474, 545, 669, 837, 978
SatI GCNGC 8 cut(s) 37, 40, 60, 180, 624, 993, 1008, 1293
Sau3AI GATC 6 cut(s) 295, 549, 663, 984, 1057, 1299
SchI GAGTC 4 cut(s) 319, 407, 1088, 1264
ScrFI CCNGG 2 cut(s) 93, 192
SduI GDGCHC 1 cut(s) 1269
SfaNI GCATC 3 cut(s) 439, 692, 835
SfcI CTRYAG 2 cut(s) 498, 1248
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 527, 731
SmoI CTYRAG 2 cut(s) 527, 731
SphI GCATGC 1 cut(s) 598
Sse9I AATT 8 cut(s) 98, 258, 357, 458, 471, 556, 834, 1281
SsiI CCGC 9 cut(s) 5, 36, 39, 122, 510, 612, 955, 992, 1010
SspMI CTAG 2 cut(s) 183, 600
SstI GAGCTC 1 cut(s) 1269
StyD4I CCNGG 2 cut(s) 91, 190
StyI CCWWGG 3 cut(s) 587, 599, 1218
TaaI ACNGT 2 cut(s) 376, 679
TaiI ACGT 3 cut(s) 894, 927, 1089
TaqI TCGA 5 cut(s) 113, 816, 936, 1240, 1260
TaqII GACCGA 1 cut(s) 857
TasI AATT 8 cut(s) 98, 258, 357, 458, 471, 556, 834, 1281
TatI WGTACW 2 cut(s) 21, 724
TauI GCSGC 3 cut(s) 39, 42, 995
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 6 cut(s) 18, 474, 545, 669, 837, 978
Tru9I TTAA 6 cut(s) 18, 474, 545, 669, 837, 978
TscAI CASTG 2 cut(s) 325, 684
TseFI GTSAC 2 cut(s) 565, 887
TseI GCWGC 5 cut(s) 59, 179, 623, 1007, 1292
Tsp45I GTSAC 2 cut(s) 565, 887
TspDTI ATGAA 2 cut(s) 150, 1174
TspGWI ACGGA 2 cut(s) 933, 1092
TspRI CASTG 2 cut(s) 325, 684
Van91I CCANNNNNTGG 1 cut(s) 1142
XapI RAATTY 1 cut(s) 1281
XceI RCATGY 2 cut(s) 598, 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmaJI CCTAGG 1 cut(s) 599
XspI CTAG 2 cut(s) 183, 600
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.