Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Reverse (-)

31361297 .. 31364937

Gene Structure 3641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGGGGAAGAACTTCAAGTACGTGATCCTCGGTGGCGGAGTCTCAGCTGGATATGCAGCTCGGGAGTTTGCTAAGCACGGTGTTAAGCCTGGCGAACTAGCAGTGATTTCCAAAGAGGCGGTTGCTCCCTATGAACGTCCTGCACTCAGCAAGGCTTATCTCTTCCCTGAGTCTCCTGCTAGACTTCCAGGGTTTCACACCTGTGTTGGAAGTGGAGGAGAGAGATTGCTTCCTGATTGGTACAAAGAGAAAGGAATAGAGTTGATTCTTAACACTGAAATAGTCAAAGTAGATCTTGCTGGGAAGACTCTTGTTAGTGGAACTGGGGAATCCTTCAAGTTTCAGATTCTTATCATTGCAACTGGTTCAACTGTTGTAAGATTGTCAGATTTTGGTGTGAAAGGAGCTGATGCTAAAAATATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTTAATGACGCAATTAAAGGAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTCACTATGGTGTACCCTGAACCGTGGTGCATGCCTCGGCTTTTCACATCTGGTATTGCTGCCTTCTATGAGGGTTATTATGCAAACAAGGGAGTTAAAATCATCAAGGGAACAGTTGCTGTTGGTTTTACATCTGATTCAAATGGAGAGGTCAAGGAAGTGCATCTAAAGGATGGCACTGTGCTTGAAGCTGACATTGTTGTTGTTGGTGTTGGGGGAAGGCCCCTAACAACCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAATTAAGATACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTTGCCACTTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

301

Amino Acids

32.41

Weight (kDa)

8.79

Isoelectric Point (pI)

24.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	6 - 281	1.3e-48	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	165 - 247	4.8e-14	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 39, 122
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	3 cut(s)	23, 245, 578
AgsI	TTSAA	7 cut(s)	19, 340, 372, 705, 752, 805, 818
AjnI	CCWGG	2 cut(s)	91, 190
AleI	CACNNNNGTG	2 cut(s)	204, 572
AluBI	AGCT	7 cut(s)	50, 62, 410, 460, 497, 532, 755
AluI	AGCT	7 cut(s)	50, 62, 410, 460, 497, 532, 755
Alw26I	GTCTC	2 cut(s)	49, 180
AlwI	GGATC	1 cut(s)	22
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	785
ApeKI	GCWGC	3 cut(s)	59, 539, 623
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	786
AsuHPI	GGTGA	1 cut(s)	895
AvaI	CYCGRG	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	71, 551, 610
BccI	CCATC	1 cut(s)	731
BciT130I	CCWGG	2 cut(s)	93, 192
BciVI	GTATCC	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	49, 180
BfaI	CTAG	2 cut(s)	101, 183
BfuI	GTATCC	1 cut(s)	509
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	3 cut(s)	60, 540, 624
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	3 cut(s)	61, 541, 625
Bme1390I	CCNGG	2 cut(s)	93, 192
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	2 cut(s)	93, 192
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	403, 439, 736
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	454, 548
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	31, 191, 587, 599
Bse1I	ACTGG	2 cut(s)	331, 370
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	93, 192
BseDI	CCNNGG	4 cut(s)	31, 191, 587, 599
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	60, 162, 163
BseNI	ACTGG	2 cut(s)	331, 370
BseRI	GAGGAG	3 cut(s)	234, 525, 836
BseXI	GCAGC	3 cut(s)	71, 551, 610
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	2 cut(s)	129, 558
BshFI	GGCC	1 cut(s)	787
BsiHKCI	CYCGRG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	822
BsmAI	GTCTC	2 cut(s)	49, 180
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	787
BsoBI	CYCGRG	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	27, 295
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	3 cut(s)	5, 39, 122
BspANI	GGCC	1 cut(s)	787
BspCNI	CTCAG	3 cut(s)	59, 162, 163
BspLI	GGNNCC	1 cut(s)	788
BspPI	GGATC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	331, 370
BssECI	CCNNGG	4 cut(s)	31, 191, 587, 599
BssMI	GATC	2 cut(s)	27, 295
Bst2UI	CCWGG	2 cut(s)	93, 192
Bst4CI	ACNGT	5 cut(s)	83, 376, 588, 679, 745
Bst6I	CTCTTC	2 cut(s)	170, 813
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	4 cut(s)	46, 75, 149, 171
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	2 cut(s)	30, 298
BstMAI	GTCTC	2 cut(s)	49, 180
BstMBI	GATC	2 cut(s)	27, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	93, 192
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	91, 190
BstV1I	GCAGC	3 cut(s)	71, 551, 610
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	787
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	111, 276, 741
Cac8I	GCNNGC	1 cut(s)	596
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	786
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	22, 244, 577
CviAII	CATG	1 cut(s)	595
CviQI	GTAC	3 cut(s)	22, 244, 577
DdeI	CTNAG	4 cut(s)	46, 75, 149, 171
DpnI	GATC	2 cut(s)	29, 297
DpnII	GATC	2 cut(s)	27, 295
DraI	TTTAAA	1 cut(s)	852
Eam1104I	CTCTTC	2 cut(s)	170, 813
EarI	CTCTTC	2 cut(s)	170, 813
EciI	GGCGGA	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	91, 190
FaeI	CATG	1 cut(s)	598
FaiI	YATR	8 cut(s)	57, 135, 572, 596, 633, 645, 873, 875
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	60, 540, 624
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	60, 540, 624
FspBI	CTAG	2 cut(s)	101, 183
GluI	GCNGC	3 cut(s)	60, 540, 624
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	787
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	7 cut(s)	42, 173, 268, 310, 332, 349, 701
HphI	GGTGA	1 cut(s)	895
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	348, 391, 700
Hpy188III	TCNNGA	4 cut(s)	65, 236, 527, 865
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	3 cut(s)	346, 637, 777
HpyCH4III	ACNGT	5 cut(s)	83, 376, 588, 679, 745
HpyCH4IV	ACGT	2 cut(s)	24, 139
HpyCH4V	TGCA	7 cut(s)	59, 146, 362, 539, 594, 647, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	4 cut(s)	46, 75, 149, 171
HpySE526I	ACGT	2 cut(s)	24, 139
Hsp92II	CATG	1 cut(s)	598
Kzo9I	GATC	2 cut(s)	27, 295
LmnI	GCTCC	2 cut(s)	133, 407
Lsp1109I	GCAGC	3 cut(s)	71, 551, 610
LweI	GCATC	3 cut(s)	403, 439, 736
MaeI	CTAG	2 cut(s)	101, 183
MaeII	ACGT	2 cut(s)	24, 139
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	29, 297
MboI	GATC	2 cut(s)	27, 295
MboII	GAAGA	4 cut(s)	22, 157, 319, 830
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	5 cut(s)	441, 471, 549, 556, 834
MlyI	GAGTC	3 cut(s)	51, 182, 304
MmeI	TCCRAC	2 cut(s)	190, 487
MnlI	CCTC	9 cut(s)	41, 112, 212, 503, 506, 609, 628, 706, 814
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	8 cut(s)	87, 273, 462, 474, 552, 660, 837, 851
MslI	CAYNNNNRTG	2 cut(s)	204, 572
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	93, 192
MvaI	CCWGG	2 cut(s)	93, 192
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	2 cut(s)	27, 295
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	1 cut(s)	788
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	565
NspI	RCATGY	1 cut(s)	598
OliI	CACNNNNGTG	2 cut(s)	204, 572
PaeI	GCATGC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	268, 332, 349, 701
PkrI	GCNGC	3 cut(s)	61, 541, 625
PleI	GAGTC	3 cut(s)	50, 181, 304
PpsI	GAGTC	3 cut(s)	50, 181, 304
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	91, 190
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	91, 190
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	786
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	23, 245, 578
RsaNI	GTAC	3 cut(s)	22, 244, 577
RseI	CAYNNNNRTG	2 cut(s)	204, 572
SaqAI	TTAA	8 cut(s)	87, 273, 462, 474, 552, 660, 837, 851
SatI	GCNGC	3 cut(s)	60, 540, 624
Sau3AI	GATC	2 cut(s)	27, 295
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	3 cut(s)	51, 182, 304
ScrFI	CCNGG	2 cut(s)	93, 192
SfaNI	GCATC	3 cut(s)	403, 439, 736
SmiMI	CAYNNNNRTG	2 cut(s)	204, 572
SmlI	CTYRAG	2 cut(s)	433, 527
SmoI	CTYRAG	2 cut(s)	433, 527
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	5 cut(s)	441, 471, 549, 556, 834
SsiI	CCGC	3 cut(s)	5, 39, 122
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	101, 183
StyD4I	CCNGG	2 cut(s)	91, 190
TaaI	ACNGT	5 cut(s)	83, 376, 588, 679, 745
TaiI	ACGT	2 cut(s)	27, 142
TasI	AATT	5 cut(s)	441, 471, 549, 556, 834
TfiI	GAWTC	4 cut(s)	268, 332, 349, 701
Tru1I	TTAA	8 cut(s)	87, 273, 462, 474, 552, 660, 837, 851
Tru9I	TTAA	8 cut(s)	87, 273, 462, 474, 552, 660, 837, 851
TscAI	CASTG	3 cut(s)	111, 283, 748
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	59, 539, 623
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	3 cut(s)	111, 283, 748
XceI	RCATGY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	101, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.