Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Reverse (-)

15011552 .. 15019800

Gene Structure 8249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGAGAAGAGCTTCAAGTACGTGATCCTCGGTGGCGGAGTCTCAGCTGGATATGCAGCTCGGGAGTTTGCCAAGCATGGGGTTAAGCCAGGCGAACTAGCAGTGATTTCCAAAGAGGCGGTTGCTCCCTATGAACGTCCTGCACTCAGCAAGGCTTATCTCTTCCCTGAGTCTCCTGCTAGACTTCCAGGGTTTCATACCTGTGTTGGAAGTGGAGGGGAGAGATTGCTTCCTGATTGGTACAAAGAGAAAGGAATAGAGTTGATTCTTAGCACTGAAATAGTCAAAGTAGATCTTGCTGGGAAGACTCTTGTTAGTGGAACTGGGGAATCCTTCAAGTTTCAGATTCTTATCATTGCAACTGGTTCAACTGTTGTAAGATTGTCAGATTTTGGTGTGAAAGGAGCTGATGCTAAAAACATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTTAATGACGTAATTAAAGCAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTTACTATGGTGTACCCTGAACCGTGGTGCATGCCTCGGCTTTTCACTTCTGGTATTGCTGCCTTCTACGAGGGTTATTATGCAAACAAGGGAGTTAAAATCGTCAAGGGAACAGTTGCTGTTGGTTTTGCCTCTGATTCAAATGGAGAGGTCAAGGAAGTGCATCTAAAGGATGGCACTGTGCTTGAAGCTGACATTGTTGTTGTTGGTGTTGGGGGAAGGCCCCTAACAACCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAATTAAGACGGATACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTTGCCACTTTCCCTTTGAAGTTGTACAATGAGAACAGAAGAGTTGAGCATGTTGACCATGCACGCAAATCTGCAGAGCAGGCCGTAAAGGTATGTAGCTCCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

332

Amino Acids

35.68

Weight (kDa)

8.2

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	6 - 322	3.6e-60	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	165 - 247	2.9e-13	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 39, 122
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	4 cut(s)	23, 245, 578, 917
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	8 cut(s)	19, 340, 372, 705, 752, 805, 818, 910
AjnI	CCWGG	2 cut(s)	91, 190
AluBI	AGCT	9 cut(s)	15, 50, 62, 410, 460, 497, 532, 755, 990
AluI	AGCT	9 cut(s)	15, 50, 62, 410, 460, 497, 532, 755, 990
Alw26I	GTCTC	2 cut(s)	49, 180
AlwI	GGATC	1 cut(s)	22
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	2 cut(s)	785, 972
ApeKI	GCWGC	3 cut(s)	59, 539, 623
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	786
AsuHPI	GGTGA	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	71, 551, 610
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	1 cut(s)	959
BciT130I	CCWGG	2 cut(s)	93, 192
BciVI	GTATCC	2 cut(s)	509, 838
BcoDI	GTCTC	2 cut(s)	49, 180
BfaI	CTAG	2 cut(s)	101, 183
BfmI	CTRYAG	1 cut(s)	963
BfuI	GTATCC	2 cut(s)	509, 838
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	3 cut(s)	60, 540, 624
BlsI	GCNGC	3 cut(s)	61, 541, 625
Bme1390I	CCNGG	2 cut(s)	93, 192
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	2 cut(s)	93, 192
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	403, 439, 736
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	454, 548
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	31, 191, 587, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	331, 370
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	93, 192
BseDI	CCNNGG	4 cut(s)	31, 191, 587, 599
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	60, 162, 163
BseNI	ACTGG	2 cut(s)	331, 370
BseRI	GAGGAG	2 cut(s)	525, 836
BseXI	GCAGC	3 cut(s)	71, 551, 610
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	2 cut(s)	129, 558
BshFI	GGCC	2 cut(s)	787, 974
BsiHKCI	CYCGRG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	49, 180
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	2 cut(s)	787, 974
BsoBI	CYCGRG	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	2 cut(s)	27, 295
BspACI	CCGC	3 cut(s)	5, 39, 122
BspANI	GGCC	2 cut(s)	787, 974
BspCNI	CTCAG	3 cut(s)	59, 162, 163
BspLI	GGNNCC	1 cut(s)	788
BspMAI	CTGCAG	1 cut(s)	967
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	331, 370
BssECI	CCNNGG	4 cut(s)	31, 191, 587, 599
BssMI	GATC	2 cut(s)	27, 295
Bst2UI	CCWGG	2 cut(s)	93, 192
Bst4CI	ACNGT	4 cut(s)	376, 588, 679, 745
Bst6I	CTCTTC	4 cut(s)	5, 170, 813, 925
BstAUI	TGTACA	1 cut(s)	915
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	596, 955, 972
BstDEI	CTNAG	5 cut(s)	46, 149, 171, 272, 996
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	2 cut(s)	30, 298
BstMAI	GTCTC	2 cut(s)	49, 180
BstMBI	GATC	2 cut(s)	27, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 971
BstNI	CCWGG	2 cut(s)	93, 192
BstNSI	RCATGY	2 cut(s)	598, 944
BstSCI	CCNGG	2 cut(s)	91, 190
BstSFI	CTRYAG	1 cut(s)	963
BstV1I	GCAGC	3 cut(s)	71, 551, 610
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuI	GTATCC	2 cut(s)	509, 838
BsuRI	GGCC	2 cut(s)	787, 974
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	111, 276, 741
Cac8I	GCNNGC	3 cut(s)	596, 955, 972
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	786
Csp6I	GTAC	4 cut(s)	22, 244, 577, 916
CviAII	CATG	4 cut(s)	80, 595, 941, 950
CviQI	GTAC	4 cut(s)	22, 244, 577, 916
DdeI	CTNAG	5 cut(s)	46, 149, 171, 272, 996
DpnI	GATC	2 cut(s)	29, 297
DpnII	GATC	2 cut(s)	27, 295
DraI	TTTAAA	1 cut(s)	856
Eam1104I	CTCTTC	4 cut(s)	5, 170, 813, 925
EarI	CTCTTC	4 cut(s)	5, 170, 813, 925
EciI	GGCGGA	2 cut(s)	20, 54
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	91, 190
FaeI	CATG	4 cut(s)	83, 598, 944, 953
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	4 cut(s)	79, 594, 940, 949
Fnu4HI	GCNGC	3 cut(s)	60, 540, 624
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	60, 540, 624
FspBI	CTAG	2 cut(s)	101, 183
GluI	GCNGC	3 cut(s)	60, 540, 624
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	787, 974
Hin1II	CATG	4 cut(s)	83, 598, 944, 953
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	7 cut(s)	42, 173, 268, 310, 332, 349, 701
HphI	GGTGA	1 cut(s)	899
Hpy166II	GTNNAC	2 cut(s)	577, 946
Hpy188I	TCNGA	3 cut(s)	348, 391, 700
Hpy188III	TCNNGA	4 cut(s)	65, 236, 527, 869
Hpy8I	GTNNAC	2 cut(s)	577, 946
HpyAV	CCTTC	3 cut(s)	346, 637, 777
HpyCH4III	ACNGT	4 cut(s)	376, 588, 679, 745
HpyCH4IV	ACGT	3 cut(s)	24, 139, 468
HpyCH4V	TGCA	9 cut(s)	59, 146, 362, 539, 594, 647, 727, 953, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 971
HpyF3I	CTNAG	5 cut(s)	46, 149, 171, 272, 996
HpySE526I	ACGT	3 cut(s)	24, 139, 468
Hsp92II	CATG	4 cut(s)	83, 598, 944, 953
Kzo9I	GATC	2 cut(s)	27, 295
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	3 cut(s)	133, 407, 995
Lsp1109I	GCAGC	3 cut(s)	71, 551, 610
LweI	GCATC	3 cut(s)	403, 439, 736
MaeI	CTAG	2 cut(s)	101, 183
MaeII	ACGT	3 cut(s)	24, 139, 468
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	29, 297
MboI	GATC	2 cut(s)	27, 295
MboII	GAAGA	5 cut(s)	22, 157, 319, 830, 942
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	5 cut(s)	441, 471, 549, 556, 834
MlyI	GAGTC	3 cut(s)	51, 182, 304
MmeI	TCCRAC	2 cut(s)	190, 487
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	7 cut(s)	87, 462, 474, 552, 660, 837, 855
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	93, 192
MvaI	CCWGG	2 cut(s)	93, 192
MwoI	GCNNNNNNNGC	2 cut(s)	56, 971
NdeII	GATC	2 cut(s)	27, 295
NlaIII	CATG	4 cut(s)	83, 598, 944, 953
NlaIV	GGNNCC	1 cut(s)	788
NmeAIII	GCCGAG	1 cut(s)	580
NspI	RCATGY	2 cut(s)	598, 944
PaeI	GCATGC	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	268, 332, 349, 701
PkrI	GCNGC	3 cut(s)	61, 541, 625
PleI	GAGTC	3 cut(s)	50, 181, 304
PpsI	GAGTC	3 cut(s)	50, 181, 304
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	91, 190
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	91, 190
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	786
PstI	CTGCAG	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	4 cut(s)	23, 245, 578, 917
RsaNI	GTAC	4 cut(s)	22, 244, 577, 916
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	7 cut(s)	87, 462, 474, 552, 660, 837, 855
SatI	GCNGC	3 cut(s)	60, 540, 624
Sau3AI	GATC	2 cut(s)	27, 295
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	3 cut(s)	51, 182, 304
ScrFI	CCNGG	2 cut(s)	93, 192
SfaNI	GCATC	3 cut(s)	403, 439, 736
SfcI	CTRYAG	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	433, 527
SmoI	CTYRAG	2 cut(s)	433, 527
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	5 cut(s)	441, 471, 549, 556, 834
SsiI	CCGC	3 cut(s)	5, 39, 122
SspMI	CTAG	2 cut(s)	101, 183
StyD4I	CCNGG	2 cut(s)	91, 190
TaaI	ACNGT	4 cut(s)	376, 588, 679, 745
TaiI	ACGT	3 cut(s)	27, 142, 471
TasI	AATT	5 cut(s)	441, 471, 549, 556, 834
TatI	WGTACW	1 cut(s)	915
TfiI	GAWTC	4 cut(s)	268, 332, 349, 701
Tru1I	TTAA	7 cut(s)	87, 462, 474, 552, 660, 837, 855
Tru9I	TTAA	7 cut(s)	87, 462, 474, 552, 660, 837, 855
TscAI	CASTG	3 cut(s)	111, 283, 748
TseI	GCWGC	3 cut(s)	59, 539, 623
TspDTI	ATGAA	2 cut(s)	150, 188
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	3 cut(s)	111, 283, 748
XceI	RCATGY	2 cut(s)	598, 944
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	101, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.