Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Forward (+)

10160798 .. 10162482

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGGCCAAGCTTCCATTGGTTCTCTTCCTCTCCTCCCTCTTCATCCATGCAGCTCTAGCTGCTTTTGTATGTGAGGATTTGCCAAATGATGTTTGCGCATTTTCGGTGTCATCTGCCGGGAAAAGATGTTTAATCGAGACGATGGCAAAGAACGATGGAAGCGTAGAGTACCAGTGCAGGACATCAGAGATTGTGGTTGAGGGTTTGGCCGAGTACATGGAGACAGATGAGTGTGTGAATGCTTGCGGTGTTGATAGAAAGTCCGTCGGAATTTCCTCCGATGCCCTTCTTGAGCCTCAGTTTATGGGCAAGCTTTGCTCTCCCAACTGTTACCAGAAGTGCCCCAACATTGTTGAACTTTACTTCAACTTGGCCGCCGGAGAGGGAGTGTTCTTGCCTGATCTGTGTGAGAGACAACGATCCAACCCTCGCCGTGCCATGATTGAACTGATGAGCTCCGGCGATGCAGCCCCTGGTCCTATTTCATCAGAAGACATACATGCCGCCCCTGGCCCCGCTTCAGATTACTTCCCCGCTTCTTCCCCTGTTCCTTCTCCAGCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

190

Amino Acids

20.29

Weight (kDa)

4.52

Isoelectric Point (pI)

65.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAR1	PF06521	24 - 168	1.1e-73	PAR1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	100
AciI	CCGC	6 cut(s)	5, 249, 378, 507, 519, 537
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	3 cut(s)	6, 210, 375
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	173, 218
AgsI	TTSAA	3 cut(s)	359, 370, 449
AjnI	CCWGG	2 cut(s)	475, 511
AluBI	AGCT	6 cut(s)	13, 56, 62, 316, 459, 563
AluI	AGCT	6 cut(s)	13, 56, 62, 316, 459, 563
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	134, 218, 409
AlwI	GGATC	1 cut(s)	417
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	4 cut(s)	6, 210, 375, 514
ApeKI	GCWGC	3 cut(s)	53, 62, 470
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	479, 515
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	3 cut(s)	49, 65, 482
BccI	CCATC	2 cut(s)	139, 152
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	477, 513
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	134, 218, 409
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
BlsI	GCNGC	6 cut(s)	7, 55, 64, 379, 472, 508
Bme1390I	CCNGG	3 cut(s)	121, 477, 513
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	479, 515
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	3 cut(s)	121, 477, 513
BmsI	GCATC	2 cut(s)	274, 457
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	475, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	477, 513
BseDI	CCNNGG	2 cut(s)	475, 511
BseGI	GGATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	49, 65, 482
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	8, 212, 377, 516
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	120, 381, 462
BsmAI	GTCTC	3 cut(s)	134, 218, 409
BsmBI	CGTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	4 cut(s)	8, 212, 377, 516
Bsp1286I	GDGCHC	2 cut(s)	347, 461
Bsp143I	GATC	2 cut(s)	403, 422
BspACI	CCGC	6 cut(s)	5, 249, 378, 507, 519, 537
BspANI	GGCC	4 cut(s)	8, 212, 377, 516
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	475, 511
BssMI	GATC	2 cut(s)	403, 422
Bst2UI	CCWGG	2 cut(s)	477, 513
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	32, 47
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	247, 314
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	2 cut(s)	406, 425
BstMAI	GTCTC	3 cut(s)	134, 218, 409
BstMBI	GATC	2 cut(s)	403, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 62, 318
BstNI	CCWGG	2 cut(s)	477, 513
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	119, 475, 511
BstSLI	GKGCMC	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	49, 65, 482
BstV2I	GAAGAC	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	8, 212, 377, 516
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	247, 314
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	479, 515
Csp6I	GTAC	2 cut(s)	172, 217
CviAII	CATG	4 cut(s)	50, 220, 442, 503
CviQI	GTAC	2 cut(s)	172, 217
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	405, 424
DpnII	GATC	2 cut(s)	403, 422
EaeI	YGGCCR	3 cut(s)	6, 210, 375
Eam1104I	CTCTTC	2 cut(s)	32, 47
EarI	CTCTTC	2 cut(s)	32, 47
Ecl136II	GAGCTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	475, 511
EcoT38I	GRGCYC	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	4 cut(s)	53, 223, 445, 506
FaiI	YATR	7 cut(s)	51, 73, 221, 308, 443, 500, 504
FatI	CATG	4 cut(s)	49, 219, 441, 502
FauI	CCCGC	2 cut(s)	526, 544
Fnu4HI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
FspBI	CTAG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	100
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	4 cut(s)	8, 212, 377, 516
HapII	CCGG	3 cut(s)	120, 381, 462
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	53, 223, 445, 506
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	11, 314
HpaII	CCGG	3 cut(s)	120, 381, 462
Hpy188I	TCNGA	5 cut(s)	190, 272, 283, 493, 526
Hpy188III	TCNNGA	2 cut(s)	139, 293
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	299, 564
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	53, 180, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 62, 318
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	53, 223, 445, 506
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	403, 422
LmnI	GCTCC	2 cut(s)	464, 568
Lsp1109I	GCAGC	3 cut(s)	49, 65, 482
LweI	GCATC	2 cut(s)	274, 457
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	2 cut(s)	405, 424
MboI	GATC	2 cut(s)	403, 422
MboII	GAAGA	4 cut(s)	19, 34, 506, 534
MhlI	GDGCHC	2 cut(s)	347, 461
MluCI	AATT	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	250, 450
MnlI	CCTC	9 cut(s)	41, 46, 50, 70, 196, 289, 309, 379, 441
MseI	TTAA	1 cut(s)	134
MspI	CCGG	3 cut(s)	120, 381, 462
MspR9I	CCNGG	3 cut(s)	121, 477, 513
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	477, 513
MwoI	GCNNNNNNNGC	3 cut(s)	59, 62, 318
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	403, 422
NlaIII	CATG	4 cut(s)	53, 223, 445, 506
NlaIV	GGNNCC	1 cut(s)	517
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	100
NspI	RCATGY	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	7, 55, 64, 379, 472, 508
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	475, 511
PspGI	CCWGG	2 cut(s)	475, 511
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	479, 515
PstNI	CAGNNNCTG	1 cut(s)	476
RsaI	GTAC	2 cut(s)	173, 218
RsaNI	GTAC	2 cut(s)	172, 217
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
Sau3AI	GATC	2 cut(s)	403, 422
Sau96I	GGNCC	2 cut(s)	479, 515
ScrFI	CCNGG	3 cut(s)	121, 477, 513
SduI	GDGCHC	2 cut(s)	347, 461
SetI	ASST	6 cut(s)	15, 58, 64, 318, 461, 565
SfaNI	GCATC	2 cut(s)	274, 457
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	6 cut(s)	5, 249, 378, 507, 519, 537
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	3 cut(s)	119, 475, 511
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	273
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	3 cut(s)	8, 380, 509
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	3 cut(s)	53, 62, 470
TspDTI	ATGAA	2 cut(s)	34, 477
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.