Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009818

Physical Location & Seq

Genomic Coordinates Reverse (-)

17270356 .. 17274043

Gene Structure 3688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCGGAGAAGAGCTTCAAGTACGTGATCCTCGGTGGCGGAGTCTCGGCTGGATATGCAGCTCGGGAGTTTGCCAAGCAGGGAGTTAAGCCAGGCGAACTAGCAGTGATTTCCAAAGAGGCGGTTGCTCCCTATGAACGTCCTGCACTCAGCAAGGCTTATCTCTTCCCTGAGTCTCCTGCTAGACTTCCGGGGTTTCATACCTGTGTTGGAAGTGGAGGGGAGAGATTGCTTCCTGATTGGTACAAAGAGAAAGGAATAGAGTTGATTCTTAGCACTGAAATCGTCAAAGTTGATCTTGCTGGGAAGACTCTTGTTAGTGGAACTGGGGAATCCTTCAAGTTTCAGATTCTTATCATTGCAACTGGTTCAACTGTTGTAAGATTGTCGGATTTTGGTGTGAAAGGAGCTGATGCTAAAAACATTTTCTACTTGAGAGAAATTGATGATGCTGATAAGCTCAATGATGCAATTAAAGCAAAAAAGAATGGGAAAGCTGTGATTGTTGGAGGAGGATACATTGGTCTTGAGCTTGGTGCAGCATTGAGAATTAACAATTTAGATGTTACTATGGTGTACCCCGAACCATGGTGCATGCCTCGGCTTTTCACTTCTGGTATTGCTGCCTTCTATGAGGGTTATTATGCAAACAAAGGAGTTAAAATCATCAAGGGAACAGTTGCTGTTGGGTTTACCTCTGATCCAAATGGAGAGGTCAAGGAAGTGCATCTAAAGGATGGCACTGTGCTTAAAGCTGACATTGTTGTTGTTGGTGTCGGGGGAAGGCCCCTAACATCCTTGTTCAAGGGACAAGTTGAAGAGGAGAAAGGTGGAATTAAGACGGATACATTCTTTAAAACAAGTGTTCCTGATGTATATGCTGTGGGTGATGTCGCCACTTTCCCTTTGAAGTTGTACAATGAGGACAGAAGAGTCGAGCATGTTGACCATGCACGCAAATCTGCAGAGCAGGCCGTAAAGGCCATCAAGGCAAGCGAGGAGGGAAAGACAGTTGAGGTCTATGATTACCTTCCATTCTTCTATTCTCGCTCCTTTGATCTGTCATGGCAATTCTATGGCGATAATGTTGGTGAGACCGTGCTCTTTGGAGACAACAATCCAACCTCACCAAAGCCCAAGTTTGGAACCTACTGGATTAAAGACGGTAAGGTGGTTGGTGCATTTCTGGAGGCTGGCACTCCTGAGGAAAACAAGGCTATTGCCAAGGTTGCAAAGCTCCAACCTCCTGTTGAGAGTTTAGATCAGCTTGCAAAGGAAGGTCTTTCTTTTGCTAGTAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0016656 GO:0016999 GO:0017001 GO:0017144 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043903 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

434

Amino Acids

47.03

Weight (kDa)

6.94

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	6 - 322	1.2e-60	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	165 - 247	2.2e-13	Pyridine nucleotide-disulphide oxidoreductase
MDHAR3-like_C	PF21791	344 - 431	1.3e-43	Monodehydroascorbate reductase 3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52880 AT3G52880
fragaria_vesca	FvH4_6g18190
malus_domestica	MD12G1021900.v1.1 MD14G1018700.v1.1
prunus_persica	Prupe.6G160700_v2.0.a1 Prupe.7G114800_v2.0.a1
pyrus_communis	pycom12g02040 pycom14g01790
rosa_chinensis	RchiOBHm_Chr3g0472521
rosa_laevigata	RLG00000024073
rosa_multiflora	Rmu_sc0003510.1_g000032 Rmu_sc0011581.1_g000005
rosa_roxburghii	Rroxscaffold_6G00408860
rosa_rugosa	Rorug03G0126200
rosa_samantha	Rh3AG178100 Rh3BG204000 Rh3CG194400 Rh3CG201500 Rh3DG170800
rosa_wichuraiana	Rw3G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	932
AciI	CCGC	3 cut(s)	5, 39, 122
AclWI	GGATC	2 cut(s)	22, 695
AfaI	GTAC	4 cut(s)	23, 245, 578, 917
AfiI	CCNNNNNNNGG	2 cut(s)	588, 1142
AgsI	TTSAA	6 cut(s)	19, 340, 372, 805, 818, 910
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	9 cut(s)	15, 62, 410, 460, 497, 532, 755, 1237, 1267
AluI	AGCT	9 cut(s)	15, 62, 410, 460, 497, 532, 755, 1237, 1267
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	4 cut(s)	49, 180, 1088, 1104
AlwI	GGATC	2 cut(s)	22, 695
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	785, 972, 981
ApeKI	GCWGC	3 cut(s)	59, 539, 623
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	786
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	899, 1103, 1119
AvaI	CYCGRG	1 cut(s)	63
AxyI	CCTNAGG	1 cut(s)	1203
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	1104
BbvI	GCAGC	3 cut(s)	71, 551, 610
BccI	CCATC	2 cut(s)	731, 992
BceAI	ACGGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	2 cut(s)	509, 838
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	4 cut(s)	49, 180, 1088, 1104
BfaI	CTAG	4 cut(s)	101, 183, 1293, 1303
BfmI	CTRYAG	1 cut(s)	963
BfuI	GTATCC	2 cut(s)	509, 838
BglI	GCCNNNNNGGC	2 cut(s)	980, 989
BglII	AGATCT	1 cut(s)	1299
BisI	GCNGC	3 cut(s)	60, 540, 624
BlsI	GCNGC	3 cut(s)	61, 541, 625
Bme1390I	CCNGG	2 cut(s)	93, 192
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	2 cut(s)	788, 1147
BmrFI	CCNGG	2 cut(s)	93, 192
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	4 cut(s)	403, 439, 457, 736
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	1208
BpuEI	CTTGAG	2 cut(s)	454, 548
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	1088
BsaJI	CCNNGG	5 cut(s)	31, 191, 587, 599, 1224
Bsc4I	CCNNNNNNNGG	2 cut(s)	588, 1142
Bse1I	ACTGG	3 cut(s)	331, 370, 1157
Bse21I	CCTNAGG	1 cut(s)	1203
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	5 cut(s)	31, 191, 587, 599, 1224
BseGI	GGATG	2 cut(s)	742, 794
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	588, 1142
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	162, 163, 1194
BseNI	ACTGG	3 cut(s)	331, 370, 1157
BseRI	GAGGAG	3 cut(s)	525, 836, 1013
BseXI	GCAGC	3 cut(s)	71, 551, 610
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	2 cut(s)	129, 558
BshFI	GGCC	3 cut(s)	787, 974, 983
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	2 cut(s)	588, 1142
BsmAI	GTCTC	4 cut(s)	49, 180, 1088, 1104
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	787, 974, 983
Bso31I	GGTCTC	1 cut(s)	1088
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	1104
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	3 cut(s)	5, 39, 122
BspANI	GGCC	3 cut(s)	787, 974, 983
BspCNI	CTCAG	3 cut(s)	162, 163, 1195
BspLI	GGNNCC	2 cut(s)	788, 1147
BspMAI	CTGCAG	1 cut(s)	967
BspPI	GGATC	2 cut(s)	22, 695
BspQI	GCTCTTC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	1088
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	3 cut(s)	331, 370, 1157
BssECI	CCNNGG	5 cut(s)	31, 191, 587, 599, 1224
BssMI	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
BssT1I	CCWWGG	2 cut(s)	587, 1224
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	6 cut(s)	376, 679, 745, 1012, 1099, 1166
Bst6I	CTCTTC	4 cut(s)	5, 170, 813, 925
BstAUI	TGTACA	1 cut(s)	915
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	6 cut(s)	596, 955, 972, 994, 1195, 1269
BstDEI	CTNAG	4 cut(s)	149, 171, 272, 1203
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	742, 794
BstKTI	GATC	6 cut(s)	30, 298, 703, 1060, 1264, 1302
BstMAI	GTCTC	4 cut(s)	49, 180, 1088, 1104
BstMBI	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 476, 971, 980, 989, 1229
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	2 cut(s)	598, 944
BstSCI	CCNGG	2 cut(s)	91, 190
BstSFI	CTRYAG	1 cut(s)	963
BstV1I	GCAGC	3 cut(s)	71, 551, 610
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	1299
BstYI	RGATCY	1 cut(s)	1299
Bsu36I	CCTNAGG	1 cut(s)	1203
BsuI	GTATCC	2 cut(s)	509, 838
BsuRI	GGCC	3 cut(s)	787, 974, 983
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	742, 794
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	111, 276, 741
Cac8I	GCNNGC	6 cut(s)	596, 955, 972, 994, 1195, 1269
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	786
Csp6I	GTAC	4 cut(s)	22, 244, 577, 916
CviAII	CATG	5 cut(s)	588, 595, 941, 950, 1065
CviQI	GTAC	4 cut(s)	22, 244, 577, 916
DdeI	CTNAG	4 cut(s)	149, 171, 272, 1203
DpnI	GATC	6 cut(s)	29, 297, 702, 1059, 1263, 1301
DpnII	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
DraI	TTTAAA	1 cut(s)	856
DrdI	GACNNNNNNGTC	1 cut(s)	932
DseDI	GACNNNNNNGTC	1 cut(s)	932
Eam1104I	CTCTTC	4 cut(s)	5, 170, 813, 925
EarI	CTCTTC	4 cut(s)	5, 170, 813, 925
EciI	GGCGGA	2 cut(s)	20, 54
Eco130I	CCWWGG	2 cut(s)	587, 1224
Eco31I	GGTCTC	1 cut(s)	1088
Eco81I	CCTNAGG	1 cut(s)	1203
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	587, 1224
ErhI	CCWWGG	2 cut(s)	587, 1224
FaeI	CATG	5 cut(s)	591, 598, 944, 953, 1068
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	5 cut(s)	587, 594, 940, 949, 1064
Fnu4HI	GCNGC	3 cut(s)	60, 540, 624
FokI	GGATG	2 cut(s)	749, 781
Fsp4HI	GCNGC	3 cut(s)	60, 540, 624
FspBI	CTAG	4 cut(s)	101, 183, 1293, 1303
GluI	GCNGC	3 cut(s)	60, 540, 624
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	1208
HaeIII	GGCC	3 cut(s)	787, 974, 983
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	5 cut(s)	591, 598, 944, 953, 1068
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HinfI	GANTC	7 cut(s)	42, 173, 268, 310, 332, 349, 933
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	3 cut(s)	899, 1103, 1119
Hpy166II	GTNNAC	3 cut(s)	577, 693, 946
Hpy188I	TCNGA	3 cut(s)	348, 391, 700
Hpy188III	TCNNGA	6 cut(s)	65, 236, 527, 869, 1187, 1202
Hpy8I	GTNNAC	3 cut(s)	577, 693, 946
HpyAV	CCTTC	5 cut(s)	346, 637, 777, 1040, 1271
HpyCH4III	ACNGT	6 cut(s)	376, 679, 745, 1012, 1099, 1166
HpyCH4IV	ACGT	2 cut(s)	24, 139
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 476, 971, 980, 989, 1229
HpyF3I	CTNAG	4 cut(s)	149, 171, 272, 1203
HpySE526I	ACGT	2 cut(s)	24, 139
Hsp92II	CATG	5 cut(s)	591, 598, 944, 953, 1068
Kzo9I	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	4 cut(s)	133, 407, 1055, 1242
Lsp1109I	GCAGC	3 cut(s)	71, 551, 610
LweI	GCATC	4 cut(s)	403, 439, 457, 736
MaeI	CTAG	4 cut(s)	101, 183, 1293, 1303
MaeII	ACGT	2 cut(s)	24, 139
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	6 cut(s)	29, 297, 702, 1059, 1263, 1301
MboI	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
MboII	GAAGA	6 cut(s)	22, 157, 319, 830, 942, 1030
MflI	RGATCY	1 cut(s)	1299
MhlI	GDGCHC	1 cut(s)	1104
MluCI	AATT	6 cut(s)	441, 471, 549, 556, 834, 1070
MlyI	GAGTC	4 cut(s)	51, 182, 304, 942
MmeI	TCCRAC	5 cut(s)	190, 369, 487, 1145, 1264
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	8 cut(s)	87, 474, 552, 660, 750, 837, 855, 1158
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	93, 192
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	6 cut(s)	56, 476, 971, 980, 989, 1229
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
NlaIII	CATG	5 cut(s)	591, 598, 944, 953, 1068
NlaIV	GGNNCC	2 cut(s)	788, 1147
NmeAIII	GCCGAG	2 cut(s)	26, 580
NspI	RCATGY	2 cut(s)	598, 944
PaeI	GCATGC	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	268, 332, 349
PkrI	GCNGC	3 cut(s)	61, 541, 625
PleI	GAGTC	4 cut(s)	50, 181, 304, 941
PpsI	GAGTC	4 cut(s)	50, 181, 304, 941
Ppu21I	YACGTR	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	788, 1147
PspPI	GGNCC	1 cut(s)	786
PstI	CTGCAG	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	1299
RsaI	GTAC	4 cut(s)	23, 245, 578, 917
RsaNI	GTAC	4 cut(s)	22, 244, 577, 916
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	8 cut(s)	87, 474, 552, 660, 750, 837, 855, 1158
SatI	GCNGC	3 cut(s)	60, 540, 624
Sau3AI	GATC	6 cut(s)	27, 295, 700, 1057, 1261, 1299
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	4 cut(s)	51, 182, 304, 942
ScrFI	CCNGG	2 cut(s)	93, 192
SduI	GDGCHC	1 cut(s)	1104
SfaNI	GCATC	4 cut(s)	403, 439, 457, 736
SfcI	CTRYAG	1 cut(s)	963
SfiI	GGCCNNNNNGGCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	433, 527
SmoI	CTYRAG	2 cut(s)	433, 527
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	6 cut(s)	441, 471, 549, 556, 834, 1070
SsiI	CCGC	3 cut(s)	5, 39, 122
SspMI	CTAG	4 cut(s)	101, 183, 1293, 1303
StyD4I	CCNGG	2 cut(s)	91, 190
StyI	CCWWGG	2 cut(s)	587, 1224
TaaI	ACNGT	6 cut(s)	376, 679, 745, 1012, 1099, 1166
TaiI	ACGT	2 cut(s)	27, 142
TaqI	TCGA	1 cut(s)	936
TasI	AATT	6 cut(s)	441, 471, 549, 556, 834, 1070
TatI	WGTACW	1 cut(s)	915
TfiI	GAWTC	3 cut(s)	268, 332, 349
Tru1I	TTAA	8 cut(s)	87, 474, 552, 660, 750, 837, 855, 1158
Tru9I	TTAA	8 cut(s)	87, 474, 552, 660, 750, 837, 855, 1158
TscAI	CASTG	3 cut(s)	111, 283, 748
TseI	GCWGC	3 cut(s)	59, 539, 623
TspDTI	ATGAA	2 cut(s)	150, 188
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	3 cut(s)	111, 283, 748
XceI	RCATGY	2 cut(s)	598, 944
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	4 cut(s)	101, 183, 1293, 1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.